Literature DB >> 21579476

1-[4-(Dimethyl-amino)benzyl-idene]-4-methyl-thio-semicarbazide.

Yu-Feng Li, Fang-Fang Jian.   

Abstract

In the title compound, C(11)H(16)N(4)S, an intra-molecular N-H⋯N hydrogen bond generates an S(5) ring. In the crystal, inversion dimers linked by pairs of N-H⋯S bonds occur, generating an R(2) (2)(8) loop.

Entities:  

Year:  2010        PMID: 21579476      PMCID: PMC2979619          DOI: 10.1107/S1600536810018386

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Girgis (2006 ▶).

Experimental

Crystal data

C11H16N4S M = 236.34 Monoclinic, a = 10.517 (2) Å b = 12.873 (3) Å c = 10.552 (2) Å β = 119.19 (3)° V = 1247.3 (4) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 293 K 0.22 × 0.20 × 0.18 mm

Data collection

Bruker SMART CCD diffractometer 11842 measured reflections 2847 independent reflections 2391 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.178 S = 1.12 2847 reflections 145 parameters H-atom parameters constrained Δρmax = 0.43 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker 1997 ▶); cell refinement: SAINT (Bruker 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810018386/hb5446sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810018386/hb5446Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H16N4SF(000) = 504
Mr = 236.34Dx = 1.259 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2391 reflections
a = 10.517 (2) Åθ = 3.2–27.5°
b = 12.873 (3) ŵ = 0.24 mm1
c = 10.552 (2) ÅT = 293 K
β = 119.19 (3)°Block, colorless
V = 1247.3 (4) Å30.22 × 0.20 × 0.18 mm
Z = 4
Bruker SMART CCD diffractometer2391 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
graphiteθmax = 27.5°, θmin = 3.2°
phi and ω scansh = −13→11
11842 measured reflectionsk = −15→16
2847 independent reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.178H-atom parameters constrained
S = 1.12w = 1/[σ2(Fo2) + (0.1186P)2 + 0.111P] where P = (Fo2 + 2Fc2)/3
2847 reflections(Δ/σ)max < 0.001
145 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.60342 (4)0.15360 (4)0.05021 (6)0.0595 (2)
N20.17952 (14)0.12707 (11)−0.13146 (16)0.0468 (3)
N30.32723 (14)0.10421 (10)−0.05970 (16)0.0491 (4)
H3A0.35690.0426−0.02720.059*
C6−0.06129 (17)0.06639 (12)−0.20701 (17)0.0435 (4)
N40.36809 (16)0.27166 (11)−0.09695 (18)0.0537 (4)
H4A0.27490.2772−0.14630.064*
C3−0.36590 (17)0.09210 (14)−0.32393 (17)0.0481 (4)
C7−0.13111 (19)0.15789 (12)−0.2769 (2)0.0495 (4)
H7A−0.07630.2116−0.28480.059*
C100.42361 (17)0.17963 (13)−0.04141 (17)0.0433 (4)
C90.09536 (17)0.05248 (12)−0.13907 (18)0.0448 (4)
H9A0.1355−0.0119−0.10020.054*
C5−0.14729 (19)−0.01233 (13)−0.1990 (2)0.0501 (4)
H5A−0.1036−0.0746−0.15430.060*
C8−0.27852 (19)0.17078 (14)−0.3344 (2)0.0537 (4)
H8A−0.32150.2327−0.38120.064*
C4−0.29596 (19)−0.00089 (14)−0.2553 (2)0.0529 (4)
H4B−0.3502−0.0552−0.24780.063*
N1−0.51338 (16)0.10490 (14)−0.38125 (18)0.0634 (4)
C2−0.5998 (2)0.0282 (2)−0.3574 (3)0.0758 (6)
H2B−0.5423−0.0329−0.31520.114*
H2C−0.68340.0107−0.44840.114*
H2D−0.63130.0560−0.29290.114*
C110.4544 (2)0.36333 (16)−0.0797 (3)0.0730 (6)
H12A0.39120.4207−0.12930.109*
H12B0.51740.3507−0.12010.109*
H12C0.51200.37950.02160.109*
C1−0.5822 (2)0.2016 (2)−0.4442 (3)0.0929 (8)
H1A−0.51420.2460−0.45410.139*
H1B−0.61380.2345−0.38280.139*
H1C−0.66470.1893−0.53810.139*
U11U22U33U12U13U23
S10.0340 (3)0.0526 (3)0.0744 (4)−0.00233 (15)0.0127 (2)−0.00072 (19)
N20.0336 (7)0.0484 (7)0.0547 (8)0.0008 (5)0.0187 (6)0.0001 (6)
N30.0335 (6)0.0439 (7)0.0637 (8)0.0010 (5)0.0188 (6)0.0032 (6)
C60.0375 (8)0.0465 (8)0.0464 (8)−0.0018 (6)0.0205 (6)−0.0026 (6)
N40.0395 (7)0.0477 (8)0.0626 (9)−0.0017 (5)0.0160 (6)0.0071 (6)
C30.0382 (8)0.0593 (10)0.0458 (8)−0.0015 (6)0.0197 (6)−0.0050 (7)
C70.0438 (9)0.0455 (9)0.0594 (10)−0.0032 (6)0.0253 (8)0.0021 (7)
C100.0382 (7)0.0455 (8)0.0436 (8)−0.0027 (6)0.0180 (6)−0.0032 (6)
C90.0391 (8)0.0437 (8)0.0504 (8)−0.0006 (6)0.0210 (6)−0.0012 (6)
C50.0446 (9)0.0455 (8)0.0572 (10)−0.0021 (6)0.0226 (8)0.0055 (7)
C80.0447 (9)0.0481 (9)0.0653 (11)0.0052 (7)0.0245 (8)0.0049 (7)
C40.0433 (9)0.0567 (9)0.0582 (10)−0.0095 (7)0.0245 (8)0.0025 (7)
N10.0370 (8)0.0805 (11)0.0677 (10)−0.0010 (7)0.0218 (7)0.0000 (8)
C20.0468 (10)0.1131 (18)0.0689 (12)−0.0167 (11)0.0293 (9)−0.0044 (12)
C110.0597 (12)0.0529 (10)0.0951 (16)−0.0073 (9)0.0289 (11)0.0121 (10)
C10.0477 (11)0.0861 (17)0.128 (2)0.0166 (11)0.0301 (13)−0.0016 (16)
S1—C101.6852 (17)C9—H9A0.9300
N2—C91.282 (2)C5—C41.383 (3)
N2—N31.3877 (19)C5—H5A0.9300
N3—C101.348 (2)C8—H8A0.9300
N3—H3A0.8600C4—H4B0.9300
C6—C51.388 (2)N1—C11.431 (3)
C6—C71.394 (2)N1—C21.444 (3)
C6—C91.452 (2)C2—H2B0.9600
N4—C101.325 (2)C2—H2C0.9600
N4—C111.445 (2)C2—H2D0.9600
N4—H4A0.8600C11—H12A0.9600
C3—N11.372 (2)C11—H12B0.9600
C3—C41.407 (2)C11—H12C0.9600
C3—C81.408 (2)C1—H1A0.9600
C7—C81.372 (2)C1—H1B0.9600
C7—H7A0.9300C1—H1C0.9600
C9—N2—N3115.50 (14)C7—C8—H8A119.4
C10—N3—N2119.27 (14)C3—C8—H8A119.4
C10—N3—H3A120.4C5—C4—C3120.64 (15)
N2—N3—H3A120.4C5—C4—H4B119.7
C5—C6—C7117.29 (14)C3—C4—H4B119.7
C5—C6—C9119.74 (14)C3—N1—C1121.07 (17)
C7—C6—C9122.92 (14)C3—N1—C2120.89 (18)
C10—N4—C11124.08 (16)C1—N1—C2117.18 (18)
C10—N4—H4A118.0N1—C2—H2B109.5
C11—N4—H4A118.0N1—C2—H2C109.5
N1—C3—C4121.59 (16)H2B—C2—H2C109.5
N1—C3—C8121.31 (16)N1—C2—H2D109.5
C4—C3—C8117.07 (14)H2B—C2—H2D109.5
C8—C7—C6121.76 (15)H2C—C2—H2D109.5
C8—C7—H7A119.1N4—C11—H12A109.5
C6—C7—H7A119.1N4—C11—H12B109.5
N4—C10—N3116.27 (14)H12A—C11—H12B109.5
N4—C10—S1124.11 (13)N4—C11—H12C109.5
N3—C10—S1119.61 (13)H12A—C11—H12C109.5
N2—C9—C6121.42 (15)H12B—C11—H12C109.5
N2—C9—H9A119.3N1—C1—H1A109.5
C6—C9—H9A119.3N1—C1—H1B109.5
C4—C5—C6121.98 (15)H1A—C1—H1B109.5
C4—C5—H5A119.0N1—C1—H1C109.5
C6—C5—H5A119.0H1A—C1—H1C109.5
C7—C8—C3121.23 (16)H1B—C1—H1C109.5
D—H···AD—HH···AD···AD—H···A
N4—H4A···N20.862.222.613 (2)108
N3—H3A···S1i0.862.593.3890 (16)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4A⋯N20.862.222.613 (2)108
N3—H3A⋯S1i0.862.593.3890 (16)155

Symmetry code: (i) .

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1.  4-Ethyl-1-(4-methyl-benzyl-idene)thio-semicarbazide.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-22

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