| Literature DB >> 21579476 |
Abstract
In the title compound, C(11)H(16)N(4)S, an intra-molecular N-H⋯N hydrogen bond generates an S(5) ring. In the crystal, inversion dimers linked by pairs of N-H⋯S bonds occur, generating an R(2) (2)(8) loop.Entities:
Year: 2010 PMID: 21579476 PMCID: PMC2979619 DOI: 10.1107/S1600536810018386
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H16N4S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 2391 reflections |
| θ = 3.2–27.5° | |
| µ = 0.24 mm−1 | |
| β = 119.19 (3)° | Block, colorless |
| 0.22 × 0.20 × 0.18 mm | |
| Bruker SMART CCD diffractometer | 2391 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 27.5°, θmin = 3.2° |
| phi and ω scans | |
| 11842 measured reflections | |
| 2847 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2847 reflections | (Δ/σ)max < 0.001 |
| 145 parameters | Δρmax = 0.43 e Å−3 |
| 0 restraints | Δρmin = −0.26 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.60342 (4) | 0.15360 (4) | 0.05021 (6) | 0.0595 (2) | |
| N2 | 0.17952 (14) | 0.12707 (11) | −0.13146 (16) | 0.0468 (3) | |
| N3 | 0.32723 (14) | 0.10421 (10) | −0.05970 (16) | 0.0491 (4) | |
| H3A | 0.3569 | 0.0426 | −0.0272 | 0.059* | |
| C6 | −0.06129 (17) | 0.06639 (12) | −0.20701 (17) | 0.0435 (4) | |
| N4 | 0.36809 (16) | 0.27166 (11) | −0.09695 (18) | 0.0537 (4) | |
| H4A | 0.2749 | 0.2772 | −0.1463 | 0.064* | |
| C3 | −0.36590 (17) | 0.09210 (14) | −0.32393 (17) | 0.0481 (4) | |
| C7 | −0.13111 (19) | 0.15789 (12) | −0.2769 (2) | 0.0495 (4) | |
| H7A | −0.0763 | 0.2116 | −0.2848 | 0.059* | |
| C10 | 0.42361 (17) | 0.17963 (13) | −0.04141 (17) | 0.0433 (4) | |
| C9 | 0.09536 (17) | 0.05248 (12) | −0.13907 (18) | 0.0448 (4) | |
| H9A | 0.1355 | −0.0119 | −0.1002 | 0.054* | |
| C5 | −0.14729 (19) | −0.01233 (13) | −0.1990 (2) | 0.0501 (4) | |
| H5A | −0.1036 | −0.0746 | −0.1543 | 0.060* | |
| C8 | −0.27852 (19) | 0.17078 (14) | −0.3344 (2) | 0.0537 (4) | |
| H8A | −0.3215 | 0.2327 | −0.3812 | 0.064* | |
| C4 | −0.29596 (19) | −0.00089 (14) | −0.2553 (2) | 0.0529 (4) | |
| H4B | −0.3502 | −0.0552 | −0.2478 | 0.063* | |
| N1 | −0.51338 (16) | 0.10490 (14) | −0.38125 (18) | 0.0634 (4) | |
| C2 | −0.5998 (2) | 0.0282 (2) | −0.3574 (3) | 0.0758 (6) | |
| H2B | −0.5423 | −0.0329 | −0.3152 | 0.114* | |
| H2C | −0.6834 | 0.0107 | −0.4484 | 0.114* | |
| H2D | −0.6313 | 0.0560 | −0.2929 | 0.114* | |
| C11 | 0.4544 (2) | 0.36333 (16) | −0.0797 (3) | 0.0730 (6) | |
| H12A | 0.3912 | 0.4207 | −0.1293 | 0.109* | |
| H12B | 0.5174 | 0.3507 | −0.1201 | 0.109* | |
| H12C | 0.5120 | 0.3795 | 0.0216 | 0.109* | |
| C1 | −0.5822 (2) | 0.2016 (2) | −0.4442 (3) | 0.0929 (8) | |
| H1A | −0.5142 | 0.2460 | −0.4541 | 0.139* | |
| H1B | −0.6138 | 0.2345 | −0.3828 | 0.139* | |
| H1C | −0.6647 | 0.1893 | −0.5381 | 0.139* |
| S1 | 0.0340 (3) | 0.0526 (3) | 0.0744 (4) | −0.00233 (15) | 0.0127 (2) | −0.00072 (19) |
| N2 | 0.0336 (7) | 0.0484 (7) | 0.0547 (8) | 0.0008 (5) | 0.0187 (6) | 0.0001 (6) |
| N3 | 0.0335 (6) | 0.0439 (7) | 0.0637 (8) | 0.0010 (5) | 0.0188 (6) | 0.0032 (6) |
| C6 | 0.0375 (8) | 0.0465 (8) | 0.0464 (8) | −0.0018 (6) | 0.0205 (6) | −0.0026 (6) |
| N4 | 0.0395 (7) | 0.0477 (8) | 0.0626 (9) | −0.0017 (5) | 0.0160 (6) | 0.0071 (6) |
| C3 | 0.0382 (8) | 0.0593 (10) | 0.0458 (8) | −0.0015 (6) | 0.0197 (6) | −0.0050 (7) |
| C7 | 0.0438 (9) | 0.0455 (9) | 0.0594 (10) | −0.0032 (6) | 0.0253 (8) | 0.0021 (7) |
| C10 | 0.0382 (7) | 0.0455 (8) | 0.0436 (8) | −0.0027 (6) | 0.0180 (6) | −0.0032 (6) |
| C9 | 0.0391 (8) | 0.0437 (8) | 0.0504 (8) | −0.0006 (6) | 0.0210 (6) | −0.0012 (6) |
| C5 | 0.0446 (9) | 0.0455 (8) | 0.0572 (10) | −0.0021 (6) | 0.0226 (8) | 0.0055 (7) |
| C8 | 0.0447 (9) | 0.0481 (9) | 0.0653 (11) | 0.0052 (7) | 0.0245 (8) | 0.0049 (7) |
| C4 | 0.0433 (9) | 0.0567 (9) | 0.0582 (10) | −0.0095 (7) | 0.0245 (8) | 0.0025 (7) |
| N1 | 0.0370 (8) | 0.0805 (11) | 0.0677 (10) | −0.0010 (7) | 0.0218 (7) | 0.0000 (8) |
| C2 | 0.0468 (10) | 0.1131 (18) | 0.0689 (12) | −0.0167 (11) | 0.0293 (9) | −0.0044 (12) |
| C11 | 0.0597 (12) | 0.0529 (10) | 0.0951 (16) | −0.0073 (9) | 0.0289 (11) | 0.0121 (10) |
| C1 | 0.0477 (11) | 0.0861 (17) | 0.128 (2) | 0.0166 (11) | 0.0301 (13) | −0.0016 (16) |
| S1—C10 | 1.6852 (17) | C9—H9A | 0.9300 |
| N2—C9 | 1.282 (2) | C5—C4 | 1.383 (3) |
| N2—N3 | 1.3877 (19) | C5—H5A | 0.9300 |
| N3—C10 | 1.348 (2) | C8—H8A | 0.9300 |
| N3—H3A | 0.8600 | C4—H4B | 0.9300 |
| C6—C5 | 1.388 (2) | N1—C1 | 1.431 (3) |
| C6—C7 | 1.394 (2) | N1—C2 | 1.444 (3) |
| C6—C9 | 1.452 (2) | C2—H2B | 0.9600 |
| N4—C10 | 1.325 (2) | C2—H2C | 0.9600 |
| N4—C11 | 1.445 (2) | C2—H2D | 0.9600 |
| N4—H4A | 0.8600 | C11—H12A | 0.9600 |
| C3—N1 | 1.372 (2) | C11—H12B | 0.9600 |
| C3—C4 | 1.407 (2) | C11—H12C | 0.9600 |
| C3—C8 | 1.408 (2) | C1—H1A | 0.9600 |
| C7—C8 | 1.372 (2) | C1—H1B | 0.9600 |
| C7—H7A | 0.9300 | C1—H1C | 0.9600 |
| C9—N2—N3 | 115.50 (14) | C7—C8—H8A | 119.4 |
| C10—N3—N2 | 119.27 (14) | C3—C8—H8A | 119.4 |
| C10—N3—H3A | 120.4 | C5—C4—C3 | 120.64 (15) |
| N2—N3—H3A | 120.4 | C5—C4—H4B | 119.7 |
| C5—C6—C7 | 117.29 (14) | C3—C4—H4B | 119.7 |
| C5—C6—C9 | 119.74 (14) | C3—N1—C1 | 121.07 (17) |
| C7—C6—C9 | 122.92 (14) | C3—N1—C2 | 120.89 (18) |
| C10—N4—C11 | 124.08 (16) | C1—N1—C2 | 117.18 (18) |
| C10—N4—H4A | 118.0 | N1—C2—H2B | 109.5 |
| C11—N4—H4A | 118.0 | N1—C2—H2C | 109.5 |
| N1—C3—C4 | 121.59 (16) | H2B—C2—H2C | 109.5 |
| N1—C3—C8 | 121.31 (16) | N1—C2—H2D | 109.5 |
| C4—C3—C8 | 117.07 (14) | H2B—C2—H2D | 109.5 |
| C8—C7—C6 | 121.76 (15) | H2C—C2—H2D | 109.5 |
| C8—C7—H7A | 119.1 | N4—C11—H12A | 109.5 |
| C6—C7—H7A | 119.1 | N4—C11—H12B | 109.5 |
| N4—C10—N3 | 116.27 (14) | H12A—C11—H12B | 109.5 |
| N4—C10—S1 | 124.11 (13) | N4—C11—H12C | 109.5 |
| N3—C10—S1 | 119.61 (13) | H12A—C11—H12C | 109.5 |
| N2—C9—C6 | 121.42 (15) | H12B—C11—H12C | 109.5 |
| N2—C9—H9A | 119.3 | N1—C1—H1A | 109.5 |
| C6—C9—H9A | 119.3 | N1—C1—H1B | 109.5 |
| C4—C5—C6 | 121.98 (15) | H1A—C1—H1B | 109.5 |
| C4—C5—H5A | 119.0 | N1—C1—H1C | 109.5 |
| C6—C5—H5A | 119.0 | H1A—C1—H1C | 109.5 |
| C7—C8—C3 | 121.23 (16) | H1B—C1—H1C | 109.5 |
| H··· | ||||
| N4—H4A···N2 | 0.86 | 2.22 | 2.613 (2) | 108 |
| N3—H3A···S1i | 0.86 | 2.59 | 3.3890 (16) | 155 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N4—H4 | 0.86 | 2.22 | 2.613 (2) | 108 |
| N3—H3 | 0.86 | 2.59 | 3.3890 (16) | 155 |
Symmetry code: (i) .