Literature DB >> 21579473

Bis(4-carboxy-piperidinium) 5-nitro-isophthalate.

Na Li1.   

Abstract

Cocrystallization of 4-carboxypiperdine with n class="Chemical">5-nitro-isophthalic acid afforded the title salt, 2C(6)H(12N)O(2) (+)·C(8)H(3)NO(6) (2-), in which the heterocyclic N atoms are protonated and the carboxylic acid groups are deprotonated. In the crystal, inter-molecular N-H⋯O and O-H⋯O hydrogen-bonding inter-actions assemble the ions into a three-dimensional network.

Entities:  

Year:  2010        PMID: 21579473      PMCID: PMC2979656          DOI: 10.1107/S1600536810017927

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For mol­ecular self-assembly by non-covalent inter­actions and its potential applications, see: Remenar et al. (2003 ▶); Oxtoby et al. (2005 ▶); Zaworotko (2001 ▶); Wang et al. (2009 ▶). For 4-piperdinecarboxylic acid as a zwitterion in aqueous solution, see: Mora et al. (2002 ▶) and for its ability to act selectively as a bridging or terminal ligand, see: Inomata et al. (2002 ▶). For related structures, see: Adams et al. (2006 ▶); Podesta & Orpen (2002 ▶); Delgado et al. (2001 ▶); Zhang et al. (2009 ▶).

Experimental

Crystal data

2C6H12NO2n class="Chemical">C8H3NO6 2− M = 469.45 Monoclinic, a = 23.6865 (12) Å b = 8.2478 (4) Å c = 22.5140 (11) Å β = 92.396 (1)° V = 4394.5 (4) Å3 Z = 8 Mo Kα radiation μ = 0.12 mm−1 T = 296 K 0.25 × 0.24 × 0.20 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.972, T max = 0.977 10813 measured reflections 3855 independent reflections 3272 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.101 S = 1.04 3855 reflections 300 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and n class="Disease">DIAMOND (Brandenburg & Berndt, 1999 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810017927/bt5271sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810017927/bt5271Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C6H12NO2+·C8H3NO62F(000) = 1984
Mr = 469.45Dx = 1.419 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 23.6865 (12) ÅCell parameters from 5783 reflections
b = 8.2478 (4) Åθ = 2.6–27.7°
c = 22.5140 (11) ŵ = 0.12 mm1
β = 92.396 (1)°T = 296 K
V = 4394.5 (4) Å3Block, colourless
Z = 80.25 × 0.24 × 0.20 mm
Bruker APEXII CCD area-detector diffractometer3855 independent reflections
Radiation source: fine-focus sealed tube3272 reflections with I > 2σ(I)
graphiteRint = 0.016
phi and ω scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −26→28
Tmin = 0.972, Tmax = 0.977k = −6→9
10813 measured reflectionsl = −26→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0446P)2 + 3.6101P] where P = (Fo2 + 2Fc2)/3
3855 reflections(Δ/σ)max = 0.001
300 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.05079 (5)0.70916 (18)−0.03056 (5)0.0496 (3)
O20.08990 (5)0.83618 (18)−0.10541 (5)0.0508 (3)
O30.16282 (6)0.63183 (16)0.15592 (5)0.0497 (3)
O40.22886 (5)0.81433 (15)0.18158 (5)0.0431 (3)
O50.31864 (6)1.0750 (2)0.00708 (7)0.0634 (4)
O60.26236 (6)1.1471 (2)−0.06513 (7)0.0702 (5)
O71.00128 (5)0.77960 (18)0.83217 (6)0.0561 (4)
H71.02730.81040.85460.084*
O80.96201 (7)1.0009 (2)0.86340 (11)0.1136 (9)
O90.89526 (5)0.40628 (18)0.75229 (5)0.0520 (4)
H90.87140.39610.77740.078*
O100.82217 (6)0.3599 (3)0.69185 (7)0.0915 (7)
N10.27300 (6)1.07054 (18)−0.01985 (7)0.0410 (3)
N20.78899 (5)0.87733 (17)0.76390 (6)0.0333 (3)
H2A0.78010.96500.78540.040*
H2B0.75780.84680.74260.040*
N30.99531 (6)0.26082 (18)0.57233 (6)0.0410 (3)
H3A1.01700.26870.54060.049*
H3B1.00250.16450.58980.049*
C10.14080 (6)0.83039 (19)−0.01316 (7)0.0310 (3)
C20.14657 (6)0.77035 (19)0.04446 (7)0.0314 (3)
H20.11910.70060.05820.038*
C30.19210 (6)0.81163 (19)0.08202 (6)0.0304 (3)
C40.23391 (6)0.9130 (2)0.06152 (7)0.0324 (4)
H40.26460.94340.08610.039*
C50.22846 (6)0.96748 (19)0.00345 (7)0.0314 (3)
C60.18275 (6)0.92973 (19)−0.03393 (7)0.0326 (3)
H60.18010.9704−0.07250.039*
C70.08946 (6)0.7881 (2)−0.05230 (7)0.0350 (4)
C80.19502 (7)0.7475 (2)0.14504 (7)0.0335 (4)
C90.90789 (6)0.8298 (2)0.79810 (8)0.0386 (4)
H9A0.91670.73450.77420.046*
C100.88790 (7)0.9662 (2)0.75661 (8)0.0424 (4)
H10A0.88191.06350.77970.051*
H10B0.91700.98940.72880.051*
C110.83367 (7)0.9221 (2)0.72253 (8)0.0426 (4)
H11A0.82101.01350.69830.051*
H11B0.84050.83170.69620.051*
C120.80657 (7)0.7439 (2)0.80488 (8)0.0411 (4)
H12A0.81210.64560.78220.049*
H12B0.77690.72360.83230.049*
C130.86074 (7)0.7858 (2)0.83956 (8)0.0422 (4)
H13A0.87250.69400.86400.051*
H13B0.85400.87660.86570.051*
C140.96009 (7)0.8790 (2)0.83435 (9)0.0433 (4)
C150.91160 (7)0.3924 (2)0.64910 (7)0.0358 (4)
H150.90510.49590.62860.043*
C160.89746 (7)0.2580 (2)0.60467 (7)0.0405 (4)
H16A0.90240.15360.62400.049*
H16B0.85820.26740.59100.049*
C170.93479 (7)0.2668 (2)0.55192 (8)0.0436 (4)
H17A0.92640.17660.52530.052*
H17B0.92730.36660.53020.052*
C181.01064 (7)0.3933 (2)0.61503 (8)0.0448 (4)
H18A1.00560.49740.59550.054*
H18B1.05010.38300.62800.054*
C190.97391 (7)0.3853 (2)0.66851 (8)0.0418 (4)
H19A0.98300.47540.69490.050*
H19B0.98150.28550.69010.050*
C200.87172 (7)0.3847 (2)0.69963 (8)0.0406 (4)
U11U22U33U12U13U23
O10.0375 (7)0.0741 (9)0.0371 (7)−0.0206 (6)0.0007 (5)−0.0047 (6)
O20.0380 (7)0.0776 (10)0.0356 (7)−0.0124 (6)−0.0110 (5)0.0119 (6)
O30.0657 (8)0.0494 (8)0.0343 (6)−0.0115 (7)0.0051 (6)0.0055 (6)
O40.0462 (7)0.0512 (7)0.0311 (6)0.0052 (6)−0.0100 (5)0.0004 (5)
O50.0413 (8)0.0816 (11)0.0667 (9)−0.0263 (7)−0.0037 (7)−0.0034 (8)
O60.0663 (10)0.0886 (12)0.0559 (9)−0.0231 (8)0.0044 (7)0.0300 (8)
O70.0410 (7)0.0657 (9)0.0596 (9)0.0117 (7)−0.0218 (6)−0.0146 (7)
O80.0655 (11)0.0722 (12)0.198 (2)0.0142 (9)−0.0592 (13)−0.0777 (14)
O90.0445 (7)0.0722 (9)0.0398 (7)−0.0102 (7)0.0066 (6)−0.0009 (7)
O100.0310 (8)0.191 (2)0.0526 (9)−0.0075 (10)0.0066 (6)−0.0059 (11)
N10.0385 (8)0.0437 (8)0.0414 (8)−0.0086 (6)0.0070 (6)−0.0033 (7)
N20.0262 (6)0.0404 (8)0.0328 (7)−0.0002 (6)−0.0040 (5)−0.0028 (6)
N30.0386 (8)0.0470 (9)0.0379 (8)0.0116 (6)0.0060 (6)0.0081 (7)
C10.0268 (7)0.0360 (9)0.0301 (8)0.0001 (6)−0.0015 (6)−0.0016 (7)
C20.0283 (8)0.0356 (9)0.0305 (8)−0.0024 (6)0.0026 (6)−0.0003 (7)
C30.0302 (8)0.0342 (8)0.0268 (7)0.0035 (6)0.0008 (6)−0.0020 (6)
C40.0278 (8)0.0370 (9)0.0320 (8)0.0006 (6)−0.0041 (6)−0.0049 (7)
C50.0294 (8)0.0321 (8)0.0329 (8)−0.0026 (6)0.0024 (6)−0.0015 (7)
C60.0325 (8)0.0372 (9)0.0278 (8)0.0023 (7)−0.0004 (6)0.0022 (7)
C70.0298 (8)0.0441 (10)0.0308 (8)−0.0005 (7)−0.0018 (6)−0.0029 (7)
C80.0350 (8)0.0373 (9)0.0282 (8)0.0077 (7)−0.0007 (7)−0.0014 (7)
C90.0287 (8)0.0333 (9)0.0532 (10)0.0005 (7)−0.0052 (7)−0.0104 (8)
C100.0339 (9)0.0461 (10)0.0475 (10)−0.0069 (8)0.0057 (7)0.0022 (8)
C110.0378 (9)0.0546 (11)0.0353 (9)−0.0019 (8)0.0032 (7)0.0060 (8)
C120.0329 (9)0.0461 (10)0.0438 (9)−0.0079 (7)−0.0041 (7)0.0103 (8)
C130.0375 (9)0.0449 (10)0.0433 (10)−0.0045 (8)−0.0096 (7)0.0089 (8)
C140.0325 (9)0.0369 (10)0.0597 (11)−0.0035 (7)−0.0073 (8)−0.0068 (9)
C150.0326 (8)0.0371 (9)0.0380 (9)0.0023 (7)0.0030 (7)0.0068 (7)
C160.0319 (9)0.0490 (10)0.0403 (9)−0.0024 (7)−0.0016 (7)0.0028 (8)
C170.0399 (9)0.0539 (11)0.0366 (9)0.0026 (8)−0.0026 (7)−0.0001 (8)
C180.0303 (9)0.0591 (12)0.0453 (10)−0.0017 (8)0.0031 (7)0.0017 (9)
C190.0326 (9)0.0549 (11)0.0379 (9)−0.0021 (8)0.0011 (7)−0.0015 (8)
C200.0329 (9)0.0459 (10)0.0431 (10)0.0039 (7)0.0035 (7)0.0036 (8)
O1—C71.241 (2)C5—C61.379 (2)
O2—C71.260 (2)C6—H60.9300
O3—C81.252 (2)C9—C141.508 (2)
O4—C81.2524 (19)C9—C101.525 (2)
O5—N11.2177 (19)C9—C131.529 (2)
O6—N11.216 (2)C9—H9A0.9800
O7—C141.277 (2)C10—C111.513 (2)
O7—H70.8200C10—H10A0.9700
O8—C141.199 (2)C10—H10B0.9700
O9—C201.301 (2)C11—H11A0.9700
O9—H90.8200C11—H11B0.9700
O10—C201.197 (2)C12—C131.514 (2)
N1—C51.469 (2)C12—H12A0.9700
N2—C121.485 (2)C12—H12B0.9700
N2—C111.485 (2)C13—H13A0.9700
N2—H2A0.9000C13—H13B0.9700
N2—H2B0.9000C15—C201.510 (2)
N3—C171.488 (2)C15—C161.521 (2)
N3—C181.490 (2)C15—C191.523 (2)
N3—H3A0.9000C15—H150.9800
N3—H3B0.9000C16—C171.512 (2)
C1—C61.384 (2)C16—H16A0.9700
C1—C21.390 (2)C16—H16B0.9700
C1—C71.512 (2)C17—H17A0.9700
C2—C31.385 (2)C17—H17B0.9700
C2—H20.9300C18—C191.516 (2)
C3—C41.390 (2)C18—H18A0.9700
C3—C81.513 (2)C18—H18B0.9700
C4—C51.383 (2)C19—H19A0.9700
C4—H40.9300C19—H19B0.9700
C14—O7—H7109.5N2—C11—H11A109.5
C20—O9—H9109.5C10—C11—H11A109.5
O6—N1—O5123.39 (15)N2—C11—H11B109.5
O6—N1—C5118.22 (14)C10—C11—H11B109.5
O5—N1—C5118.38 (15)H11A—C11—H11B108.1
C12—N2—C11112.66 (13)N2—C12—C13111.15 (14)
C12—N2—H2A109.1N2—C12—H12A109.4
C11—N2—H2A109.1C13—C12—H12A109.4
C12—N2—H2B109.1N2—C12—H12B109.4
C11—N2—H2B109.1C13—C12—H12B109.4
H2A—N2—H2B107.8H12A—C12—H12B108.0
C17—N3—C18112.38 (13)C12—C13—C9111.37 (14)
C17—N3—H3A109.1C12—C13—H13A109.4
C18—N3—H3A109.1C9—C13—H13A109.4
C17—N3—H3B109.1C12—C13—H13B109.4
C18—N3—H3B109.1C9—C13—H13B109.4
H3A—N3—H3B107.9H13A—C13—H13B108.0
C6—C1—C2118.83 (14)O8—C14—O7123.21 (17)
C6—C1—C7120.71 (14)O8—C14—C9122.15 (17)
C2—C1—C7120.46 (14)O7—C14—C9114.63 (15)
C3—C2—C1121.73 (14)C20—C15—C16109.74 (14)
C3—C2—H2119.1C20—C15—C19114.31 (14)
C1—C2—H2119.1C16—C15—C19110.20 (14)
C2—C3—C4119.53 (14)C20—C15—H15107.4
C2—C3—C8119.36 (14)C16—C15—H15107.4
C4—C3—C8121.11 (14)C19—C15—H15107.4
C5—C4—C3118.01 (14)C17—C16—C15111.22 (14)
C5—C4—H4121.0C17—C16—H16A109.4
C3—C4—H4121.0C15—C16—H16A109.4
C6—C5—C4122.91 (14)C17—C16—H16B109.4
C6—C5—N1118.04 (14)C15—C16—H16B109.4
C4—C5—N1119.05 (14)H16A—C16—H16B108.0
C5—C6—C1118.94 (14)N3—C17—C16110.08 (14)
C5—C6—H6120.5N3—C17—H17A109.6
C1—C6—H6120.5C16—C17—H17A109.6
O1—C7—O2125.10 (15)N3—C17—H17B109.6
O1—C7—C1118.68 (14)C16—C17—H17B109.6
O2—C7—C1116.22 (14)H17A—C17—H17B108.2
O3—C8—O4125.83 (15)N3—C18—C19110.39 (14)
O3—C8—C3116.47 (14)N3—C18—H18A109.6
O4—C8—C3117.70 (15)C19—C18—H18A109.6
C14—C9—C10111.07 (14)N3—C18—H18B109.6
C14—C9—C13109.67 (15)C19—C18—H18B109.6
C10—C9—C13109.44 (13)H18A—C18—H18B108.1
C14—C9—H9A108.9C18—C19—C15110.60 (14)
C10—C9—H9A108.9C18—C19—H19A109.5
C13—C9—H9A108.9C15—C19—H19A109.5
C11—C10—C9111.62 (14)C18—C19—H19B109.5
C11—C10—H10A109.3C15—C19—H19B109.5
C9—C10—H10A109.3H19A—C19—H19B108.1
C11—C10—H10B109.3O10—C20—O9122.47 (17)
C9—C10—H10B109.3O10—C20—C15122.50 (16)
H10A—C10—H10B108.0O9—C20—C15115.03 (14)
N2—C11—C10110.73 (14)
C6—C1—C2—C32.2 (2)C14—C9—C10—C11−176.73 (15)
C7—C1—C2—C3−177.66 (14)C13—C9—C10—C11−55.51 (19)
C1—C2—C3—C4−1.3 (2)C12—N2—C11—C10−55.94 (19)
C1—C2—C3—C8177.74 (14)C9—C10—C11—N256.0 (2)
C2—C3—C4—C5−0.8 (2)C11—N2—C12—C1355.84 (19)
C8—C3—C4—C5−179.84 (14)N2—C12—C13—C9−55.4 (2)
C3—C4—C5—C62.1 (2)C14—C9—C13—C12177.09 (15)
C3—C4—C5—N1−178.06 (14)C10—C9—C13—C1255.02 (19)
O6—N1—C5—C616.3 (2)C10—C9—C14—O853.3 (3)
O5—N1—C5—C6−163.70 (16)C13—C9—C14—O8−67.8 (3)
O6—N1—C5—C4−163.54 (17)C10—C9—C14—O7−127.69 (18)
O5—N1—C5—C416.5 (2)C13—C9—C14—O7111.21 (18)
C4—C5—C6—C1−1.3 (2)C20—C15—C16—C17177.29 (14)
N1—C5—C6—C1178.86 (14)C19—C15—C16—C17−55.98 (19)
C2—C1—C6—C5−0.8 (2)C18—N3—C17—C16−57.40 (19)
C7—C1—C6—C5178.99 (14)C15—C16—C17—N356.3 (2)
C6—C1—C7—O1−174.49 (16)C17—N3—C18—C1957.68 (19)
C2—C1—C7—O15.3 (2)N3—C18—C19—C15−56.3 (2)
C6—C1—C7—O26.0 (2)C20—C15—C19—C18179.86 (15)
C2—C1—C7—O2−174.16 (15)C16—C15—C19—C1855.7 (2)
C2—C3—C8—O315.5 (2)C16—C15—C20—O10−42.0 (3)
C4—C3—C8—O3−165.40 (15)C19—C15—C20—O10−166.3 (2)
C2—C3—C8—O4−164.12 (15)C16—C15—C20—O9137.65 (16)
C4—C3—C8—O415.0 (2)C19—C15—C20—O913.3 (2)
D—H···AD—HH···AD···AD—H···A
O7—H7···O2i0.821.722.5204 (16)166
O9—H9···O3ii0.821.752.5495 (17)164
N2—H2A···O4iii0.901.982.8629 (19)166
N2—H2B···O4iv0.902.012.7823 (17)143
N3—H3A···O1v0.901.832.7220 (18)171
N3—H3B···O8vi0.901.892.755 (2)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O7—H7⋯O2i0.821.722.5204 (16)166
O9—H9⋯O3ii0.821.752.5495 (17)164
N2—H2A⋯O4iii0.901.982.8629 (19)166
N2—H2B⋯O4iv0.902.012.7823 (17)143
N3—H3A⋯O1v0.901.832.7220 (18)171
N3—H3B⋯O8vi0.901.892.755 (2)161

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Zwitterionic 4-piperidinecarboxylic acid monohydrate.

Authors:  G Delgado; A J Mora; A Bahsas
Journal:  Acta Crystallogr C       Date:  2001-08-09       Impact factor: 1.172

3.  Cation and anion diversity in [M(dithiooxalate)2]2- salts: structure robustness in crystal synthesis.

Authors:  Christopher J Adams; Paul C Crawford; A Guy Orpen; Thomas J Podesta
Journal:  Dalton Trans       Date:  2006-07-12       Impact factor: 4.390

4.  Crystal engineering of novel cocrystals of a triazole drug with 1,4-dicarboxylic acids.

Authors:  Julius F Remenar; Sherry L Morissette; Matthew L Peterson; Brian Moulton; J Michael MacPhee; Héctor R Guzmán; Orn Almarsson
Journal:  J Am Chem Soc       Date:  2003-07-16       Impact factor: 15.419

5.  Aqua-bis(4-nitro-benzoato)-κO,O';κO-(piperidinium-4-carboxyl-ato-κO,O')cadmium(II).

Authors:  Run-Wen Zhang; Li-Li Wang; Xiao-Jun Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20

6.  Hydrogen-bonded zigzag chains in 2,2'-dithiodibenzoic acid-1,3-di-4-pyridylpropane (1/1).

Authors:  Li-Li Wang; Hong Chang; En-Cui Yang
Journal:  Acta Crystallogr C       Date:  2009-08-26       Impact factor: 1.172

  6 in total

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