| Literature DB >> 21579473 |
Na Li1.
Abstract
Cocrystallization of 4-carboxypiperdine withEntities:
Year: 2010 PMID: 21579473 PMCID: PMC2979656 DOI: 10.1107/S1600536810017927
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C6H12NO2+·C8H3NO62− | |
| Monoclinic, | Mo |
| Cell parameters from 5783 reflections | |
| θ = 2.6–27.7° | |
| µ = 0.12 mm−1 | |
| β = 92.396 (1)° | |
| Block, colourless | |
| 0.25 × 0.24 × 0.20 mm |
| Bruker APEXII CCD area-detector diffractometer | 3855 independent reflections |
| Radiation source: fine-focus sealed tube | 3272 reflections with |
| graphite | |
| phi and ω scans | θmax = 25.0°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 10813 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3855 reflections | (Δ/σ)max = 0.001 |
| 300 parameters | Δρmax = 0.30 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.05079 (5) | 0.70916 (18) | −0.03056 (5) | 0.0496 (3) | |
| O2 | 0.08990 (5) | 0.83618 (18) | −0.10541 (5) | 0.0508 (3) | |
| O3 | 0.16282 (6) | 0.63183 (16) | 0.15592 (5) | 0.0497 (3) | |
| O4 | 0.22886 (5) | 0.81433 (15) | 0.18158 (5) | 0.0431 (3) | |
| O5 | 0.31864 (6) | 1.0750 (2) | 0.00708 (7) | 0.0634 (4) | |
| O6 | 0.26236 (6) | 1.1471 (2) | −0.06513 (7) | 0.0702 (5) | |
| O7 | 1.00128 (5) | 0.77960 (18) | 0.83217 (6) | 0.0561 (4) | |
| H7 | 1.0273 | 0.8104 | 0.8546 | 0.084* | |
| O8 | 0.96201 (7) | 1.0009 (2) | 0.86340 (11) | 0.1136 (9) | |
| O9 | 0.89526 (5) | 0.40628 (18) | 0.75229 (5) | 0.0520 (4) | |
| H9 | 0.8714 | 0.3961 | 0.7774 | 0.078* | |
| O10 | 0.82217 (6) | 0.3599 (3) | 0.69185 (7) | 0.0915 (7) | |
| N1 | 0.27300 (6) | 1.07054 (18) | −0.01985 (7) | 0.0410 (3) | |
| N2 | 0.78899 (5) | 0.87733 (17) | 0.76390 (6) | 0.0333 (3) | |
| H2A | 0.7801 | 0.9650 | 0.7854 | 0.040* | |
| H2B | 0.7578 | 0.8468 | 0.7426 | 0.040* | |
| N3 | 0.99531 (6) | 0.26082 (18) | 0.57233 (6) | 0.0410 (3) | |
| H3A | 1.0170 | 0.2687 | 0.5406 | 0.049* | |
| H3B | 1.0025 | 0.1645 | 0.5898 | 0.049* | |
| C1 | 0.14080 (6) | 0.83039 (19) | −0.01316 (7) | 0.0310 (3) | |
| C2 | 0.14657 (6) | 0.77035 (19) | 0.04446 (7) | 0.0314 (3) | |
| H2 | 0.1191 | 0.7006 | 0.0582 | 0.038* | |
| C3 | 0.19210 (6) | 0.81163 (19) | 0.08202 (6) | 0.0304 (3) | |
| C4 | 0.23391 (6) | 0.9130 (2) | 0.06152 (7) | 0.0324 (4) | |
| H4 | 0.2646 | 0.9434 | 0.0861 | 0.039* | |
| C5 | 0.22846 (6) | 0.96748 (19) | 0.00345 (7) | 0.0314 (3) | |
| C6 | 0.18275 (6) | 0.92973 (19) | −0.03393 (7) | 0.0326 (3) | |
| H6 | 0.1801 | 0.9704 | −0.0725 | 0.039* | |
| C7 | 0.08946 (6) | 0.7881 (2) | −0.05230 (7) | 0.0350 (4) | |
| C8 | 0.19502 (7) | 0.7475 (2) | 0.14504 (7) | 0.0335 (4) | |
| C9 | 0.90789 (6) | 0.8298 (2) | 0.79810 (8) | 0.0386 (4) | |
| H9A | 0.9167 | 0.7345 | 0.7742 | 0.046* | |
| C10 | 0.88790 (7) | 0.9662 (2) | 0.75661 (8) | 0.0424 (4) | |
| H10A | 0.8819 | 1.0635 | 0.7797 | 0.051* | |
| H10B | 0.9170 | 0.9894 | 0.7288 | 0.051* | |
| C11 | 0.83367 (7) | 0.9221 (2) | 0.72253 (8) | 0.0426 (4) | |
| H11A | 0.8210 | 1.0135 | 0.6983 | 0.051* | |
| H11B | 0.8405 | 0.8317 | 0.6962 | 0.051* | |
| C12 | 0.80657 (7) | 0.7439 (2) | 0.80488 (8) | 0.0411 (4) | |
| H12A | 0.8121 | 0.6456 | 0.7822 | 0.049* | |
| H12B | 0.7769 | 0.7236 | 0.8323 | 0.049* | |
| C13 | 0.86074 (7) | 0.7858 (2) | 0.83956 (8) | 0.0422 (4) | |
| H13A | 0.8725 | 0.6940 | 0.8640 | 0.051* | |
| H13B | 0.8540 | 0.8766 | 0.8657 | 0.051* | |
| C14 | 0.96009 (7) | 0.8790 (2) | 0.83435 (9) | 0.0433 (4) | |
| C15 | 0.91160 (7) | 0.3924 (2) | 0.64910 (7) | 0.0358 (4) | |
| H15 | 0.9051 | 0.4959 | 0.6286 | 0.043* | |
| C16 | 0.89746 (7) | 0.2580 (2) | 0.60467 (7) | 0.0405 (4) | |
| H16A | 0.9024 | 0.1536 | 0.6240 | 0.049* | |
| H16B | 0.8582 | 0.2674 | 0.5910 | 0.049* | |
| C17 | 0.93479 (7) | 0.2668 (2) | 0.55192 (8) | 0.0436 (4) | |
| H17A | 0.9264 | 0.1766 | 0.5253 | 0.052* | |
| H17B | 0.9273 | 0.3666 | 0.5302 | 0.052* | |
| C18 | 1.01064 (7) | 0.3933 (2) | 0.61503 (8) | 0.0448 (4) | |
| H18A | 1.0056 | 0.4974 | 0.5955 | 0.054* | |
| H18B | 1.0501 | 0.3830 | 0.6280 | 0.054* | |
| C19 | 0.97391 (7) | 0.3853 (2) | 0.66851 (8) | 0.0418 (4) | |
| H19A | 0.9830 | 0.4754 | 0.6949 | 0.050* | |
| H19B | 0.9815 | 0.2855 | 0.6901 | 0.050* | |
| C20 | 0.87172 (7) | 0.3847 (2) | 0.69963 (8) | 0.0406 (4) |
| O1 | 0.0375 (7) | 0.0741 (9) | 0.0371 (7) | −0.0206 (6) | 0.0007 (5) | −0.0047 (6) |
| O2 | 0.0380 (7) | 0.0776 (10) | 0.0356 (7) | −0.0124 (6) | −0.0110 (5) | 0.0119 (6) |
| O3 | 0.0657 (8) | 0.0494 (8) | 0.0343 (6) | −0.0115 (7) | 0.0051 (6) | 0.0055 (6) |
| O4 | 0.0462 (7) | 0.0512 (7) | 0.0311 (6) | 0.0052 (6) | −0.0100 (5) | 0.0004 (5) |
| O5 | 0.0413 (8) | 0.0816 (11) | 0.0667 (9) | −0.0263 (7) | −0.0037 (7) | −0.0034 (8) |
| O6 | 0.0663 (10) | 0.0886 (12) | 0.0559 (9) | −0.0231 (8) | 0.0044 (7) | 0.0300 (8) |
| O7 | 0.0410 (7) | 0.0657 (9) | 0.0596 (9) | 0.0117 (7) | −0.0218 (6) | −0.0146 (7) |
| O8 | 0.0655 (11) | 0.0722 (12) | 0.198 (2) | 0.0142 (9) | −0.0592 (13) | −0.0777 (14) |
| O9 | 0.0445 (7) | 0.0722 (9) | 0.0398 (7) | −0.0102 (7) | 0.0066 (6) | −0.0009 (7) |
| O10 | 0.0310 (8) | 0.191 (2) | 0.0526 (9) | −0.0075 (10) | 0.0066 (6) | −0.0059 (11) |
| N1 | 0.0385 (8) | 0.0437 (8) | 0.0414 (8) | −0.0086 (6) | 0.0070 (6) | −0.0033 (7) |
| N2 | 0.0262 (6) | 0.0404 (8) | 0.0328 (7) | −0.0002 (6) | −0.0040 (5) | −0.0028 (6) |
| N3 | 0.0386 (8) | 0.0470 (9) | 0.0379 (8) | 0.0116 (6) | 0.0060 (6) | 0.0081 (7) |
| C1 | 0.0268 (7) | 0.0360 (9) | 0.0301 (8) | 0.0001 (6) | −0.0015 (6) | −0.0016 (7) |
| C2 | 0.0283 (8) | 0.0356 (9) | 0.0305 (8) | −0.0024 (6) | 0.0026 (6) | −0.0003 (7) |
| C3 | 0.0302 (8) | 0.0342 (8) | 0.0268 (7) | 0.0035 (6) | 0.0008 (6) | −0.0020 (6) |
| C4 | 0.0278 (8) | 0.0370 (9) | 0.0320 (8) | 0.0006 (6) | −0.0041 (6) | −0.0049 (7) |
| C5 | 0.0294 (8) | 0.0321 (8) | 0.0329 (8) | −0.0026 (6) | 0.0024 (6) | −0.0015 (7) |
| C6 | 0.0325 (8) | 0.0372 (9) | 0.0278 (8) | 0.0023 (7) | −0.0004 (6) | 0.0022 (7) |
| C7 | 0.0298 (8) | 0.0441 (10) | 0.0308 (8) | −0.0005 (7) | −0.0018 (6) | −0.0029 (7) |
| C8 | 0.0350 (8) | 0.0373 (9) | 0.0282 (8) | 0.0077 (7) | −0.0007 (7) | −0.0014 (7) |
| C9 | 0.0287 (8) | 0.0333 (9) | 0.0532 (10) | 0.0005 (7) | −0.0052 (7) | −0.0104 (8) |
| C10 | 0.0339 (9) | 0.0461 (10) | 0.0475 (10) | −0.0069 (8) | 0.0057 (7) | 0.0022 (8) |
| C11 | 0.0378 (9) | 0.0546 (11) | 0.0353 (9) | −0.0019 (8) | 0.0032 (7) | 0.0060 (8) |
| C12 | 0.0329 (9) | 0.0461 (10) | 0.0438 (9) | −0.0079 (7) | −0.0041 (7) | 0.0103 (8) |
| C13 | 0.0375 (9) | 0.0449 (10) | 0.0433 (10) | −0.0045 (8) | −0.0096 (7) | 0.0089 (8) |
| C14 | 0.0325 (9) | 0.0369 (10) | 0.0597 (11) | −0.0035 (7) | −0.0073 (8) | −0.0068 (9) |
| C15 | 0.0326 (8) | 0.0371 (9) | 0.0380 (9) | 0.0023 (7) | 0.0030 (7) | 0.0068 (7) |
| C16 | 0.0319 (9) | 0.0490 (10) | 0.0403 (9) | −0.0024 (7) | −0.0016 (7) | 0.0028 (8) |
| C17 | 0.0399 (9) | 0.0539 (11) | 0.0366 (9) | 0.0026 (8) | −0.0026 (7) | −0.0001 (8) |
| C18 | 0.0303 (9) | 0.0591 (12) | 0.0453 (10) | −0.0017 (8) | 0.0031 (7) | 0.0017 (9) |
| C19 | 0.0326 (9) | 0.0549 (11) | 0.0379 (9) | −0.0021 (8) | 0.0011 (7) | −0.0015 (8) |
| C20 | 0.0329 (9) | 0.0459 (10) | 0.0431 (10) | 0.0039 (7) | 0.0035 (7) | 0.0036 (8) |
| O1—C7 | 1.241 (2) | C5—C6 | 1.379 (2) |
| O2—C7 | 1.260 (2) | C6—H6 | 0.9300 |
| O3—C8 | 1.252 (2) | C9—C14 | 1.508 (2) |
| O4—C8 | 1.2524 (19) | C9—C10 | 1.525 (2) |
| O5—N1 | 1.2177 (19) | C9—C13 | 1.529 (2) |
| O6—N1 | 1.216 (2) | C9—H9A | 0.9800 |
| O7—C14 | 1.277 (2) | C10—C11 | 1.513 (2) |
| O7—H7 | 0.8200 | C10—H10A | 0.9700 |
| O8—C14 | 1.199 (2) | C10—H10B | 0.9700 |
| O9—C20 | 1.301 (2) | C11—H11A | 0.9700 |
| O9—H9 | 0.8200 | C11—H11B | 0.9700 |
| O10—C20 | 1.197 (2) | C12—C13 | 1.514 (2) |
| N1—C5 | 1.469 (2) | C12—H12A | 0.9700 |
| N2—C12 | 1.485 (2) | C12—H12B | 0.9700 |
| N2—C11 | 1.485 (2) | C13—H13A | 0.9700 |
| N2—H2A | 0.9000 | C13—H13B | 0.9700 |
| N2—H2B | 0.9000 | C15—C20 | 1.510 (2) |
| N3—C17 | 1.488 (2) | C15—C16 | 1.521 (2) |
| N3—C18 | 1.490 (2) | C15—C19 | 1.523 (2) |
| N3—H3A | 0.9000 | C15—H15 | 0.9800 |
| N3—H3B | 0.9000 | C16—C17 | 1.512 (2) |
| C1—C6 | 1.384 (2) | C16—H16A | 0.9700 |
| C1—C2 | 1.390 (2) | C16—H16B | 0.9700 |
| C1—C7 | 1.512 (2) | C17—H17A | 0.9700 |
| C2—C3 | 1.385 (2) | C17—H17B | 0.9700 |
| C2—H2 | 0.9300 | C18—C19 | 1.516 (2) |
| C3—C4 | 1.390 (2) | C18—H18A | 0.9700 |
| C3—C8 | 1.513 (2) | C18—H18B | 0.9700 |
| C4—C5 | 1.383 (2) | C19—H19A | 0.9700 |
| C4—H4 | 0.9300 | C19—H19B | 0.9700 |
| C14—O7—H7 | 109.5 | N2—C11—H11A | 109.5 |
| C20—O9—H9 | 109.5 | C10—C11—H11A | 109.5 |
| O6—N1—O5 | 123.39 (15) | N2—C11—H11B | 109.5 |
| O6—N1—C5 | 118.22 (14) | C10—C11—H11B | 109.5 |
| O5—N1—C5 | 118.38 (15) | H11A—C11—H11B | 108.1 |
| C12—N2—C11 | 112.66 (13) | N2—C12—C13 | 111.15 (14) |
| C12—N2—H2A | 109.1 | N2—C12—H12A | 109.4 |
| C11—N2—H2A | 109.1 | C13—C12—H12A | 109.4 |
| C12—N2—H2B | 109.1 | N2—C12—H12B | 109.4 |
| C11—N2—H2B | 109.1 | C13—C12—H12B | 109.4 |
| H2A—N2—H2B | 107.8 | H12A—C12—H12B | 108.0 |
| C17—N3—C18 | 112.38 (13) | C12—C13—C9 | 111.37 (14) |
| C17—N3—H3A | 109.1 | C12—C13—H13A | 109.4 |
| C18—N3—H3A | 109.1 | C9—C13—H13A | 109.4 |
| C17—N3—H3B | 109.1 | C12—C13—H13B | 109.4 |
| C18—N3—H3B | 109.1 | C9—C13—H13B | 109.4 |
| H3A—N3—H3B | 107.9 | H13A—C13—H13B | 108.0 |
| C6—C1—C2 | 118.83 (14) | O8—C14—O7 | 123.21 (17) |
| C6—C1—C7 | 120.71 (14) | O8—C14—C9 | 122.15 (17) |
| C2—C1—C7 | 120.46 (14) | O7—C14—C9 | 114.63 (15) |
| C3—C2—C1 | 121.73 (14) | C20—C15—C16 | 109.74 (14) |
| C3—C2—H2 | 119.1 | C20—C15—C19 | 114.31 (14) |
| C1—C2—H2 | 119.1 | C16—C15—C19 | 110.20 (14) |
| C2—C3—C4 | 119.53 (14) | C20—C15—H15 | 107.4 |
| C2—C3—C8 | 119.36 (14) | C16—C15—H15 | 107.4 |
| C4—C3—C8 | 121.11 (14) | C19—C15—H15 | 107.4 |
| C5—C4—C3 | 118.01 (14) | C17—C16—C15 | 111.22 (14) |
| C5—C4—H4 | 121.0 | C17—C16—H16A | 109.4 |
| C3—C4—H4 | 121.0 | C15—C16—H16A | 109.4 |
| C6—C5—C4 | 122.91 (14) | C17—C16—H16B | 109.4 |
| C6—C5—N1 | 118.04 (14) | C15—C16—H16B | 109.4 |
| C4—C5—N1 | 119.05 (14) | H16A—C16—H16B | 108.0 |
| C5—C6—C1 | 118.94 (14) | N3—C17—C16 | 110.08 (14) |
| C5—C6—H6 | 120.5 | N3—C17—H17A | 109.6 |
| C1—C6—H6 | 120.5 | C16—C17—H17A | 109.6 |
| O1—C7—O2 | 125.10 (15) | N3—C17—H17B | 109.6 |
| O1—C7—C1 | 118.68 (14) | C16—C17—H17B | 109.6 |
| O2—C7—C1 | 116.22 (14) | H17A—C17—H17B | 108.2 |
| O3—C8—O4 | 125.83 (15) | N3—C18—C19 | 110.39 (14) |
| O3—C8—C3 | 116.47 (14) | N3—C18—H18A | 109.6 |
| O4—C8—C3 | 117.70 (15) | C19—C18—H18A | 109.6 |
| C14—C9—C10 | 111.07 (14) | N3—C18—H18B | 109.6 |
| C14—C9—C13 | 109.67 (15) | C19—C18—H18B | 109.6 |
| C10—C9—C13 | 109.44 (13) | H18A—C18—H18B | 108.1 |
| C14—C9—H9A | 108.9 | C18—C19—C15 | 110.60 (14) |
| C10—C9—H9A | 108.9 | C18—C19—H19A | 109.5 |
| C13—C9—H9A | 108.9 | C15—C19—H19A | 109.5 |
| C11—C10—C9 | 111.62 (14) | C18—C19—H19B | 109.5 |
| C11—C10—H10A | 109.3 | C15—C19—H19B | 109.5 |
| C9—C10—H10A | 109.3 | H19A—C19—H19B | 108.1 |
| C11—C10—H10B | 109.3 | O10—C20—O9 | 122.47 (17) |
| C9—C10—H10B | 109.3 | O10—C20—C15 | 122.50 (16) |
| H10A—C10—H10B | 108.0 | O9—C20—C15 | 115.03 (14) |
| N2—C11—C10 | 110.73 (14) | ||
| C6—C1—C2—C3 | 2.2 (2) | C14—C9—C10—C11 | −176.73 (15) |
| C7—C1—C2—C3 | −177.66 (14) | C13—C9—C10—C11 | −55.51 (19) |
| C1—C2—C3—C4 | −1.3 (2) | C12—N2—C11—C10 | −55.94 (19) |
| C1—C2—C3—C8 | 177.74 (14) | C9—C10—C11—N2 | 56.0 (2) |
| C2—C3—C4—C5 | −0.8 (2) | C11—N2—C12—C13 | 55.84 (19) |
| C8—C3—C4—C5 | −179.84 (14) | N2—C12—C13—C9 | −55.4 (2) |
| C3—C4—C5—C6 | 2.1 (2) | C14—C9—C13—C12 | 177.09 (15) |
| C3—C4—C5—N1 | −178.06 (14) | C10—C9—C13—C12 | 55.02 (19) |
| O6—N1—C5—C6 | 16.3 (2) | C10—C9—C14—O8 | 53.3 (3) |
| O5—N1—C5—C6 | −163.70 (16) | C13—C9—C14—O8 | −67.8 (3) |
| O6—N1—C5—C4 | −163.54 (17) | C10—C9—C14—O7 | −127.69 (18) |
| O5—N1—C5—C4 | 16.5 (2) | C13—C9—C14—O7 | 111.21 (18) |
| C4—C5—C6—C1 | −1.3 (2) | C20—C15—C16—C17 | 177.29 (14) |
| N1—C5—C6—C1 | 178.86 (14) | C19—C15—C16—C17 | −55.98 (19) |
| C2—C1—C6—C5 | −0.8 (2) | C18—N3—C17—C16 | −57.40 (19) |
| C7—C1—C6—C5 | 178.99 (14) | C15—C16—C17—N3 | 56.3 (2) |
| C6—C1—C7—O1 | −174.49 (16) | C17—N3—C18—C19 | 57.68 (19) |
| C2—C1—C7—O1 | 5.3 (2) | N3—C18—C19—C15 | −56.3 (2) |
| C6—C1—C7—O2 | 6.0 (2) | C20—C15—C19—C18 | 179.86 (15) |
| C2—C1—C7—O2 | −174.16 (15) | C16—C15—C19—C18 | 55.7 (2) |
| C2—C3—C8—O3 | 15.5 (2) | C16—C15—C20—O10 | −42.0 (3) |
| C4—C3—C8—O3 | −165.40 (15) | C19—C15—C20—O10 | −166.3 (2) |
| C2—C3—C8—O4 | −164.12 (15) | C16—C15—C20—O9 | 137.65 (16) |
| C4—C3—C8—O4 | 15.0 (2) | C19—C15—C20—O9 | 13.3 (2) |
| H··· | ||||
| O7—H7···O2i | 0.82 | 1.72 | 2.5204 (16) | 166 |
| O9—H9···O3ii | 0.82 | 1.75 | 2.5495 (17) | 164 |
| N2—H2A···O4iii | 0.90 | 1.98 | 2.8629 (19) | 166 |
| N2—H2B···O4iv | 0.90 | 2.01 | 2.7823 (17) | 143 |
| N3—H3A···O1v | 0.90 | 1.83 | 2.7220 (18) | 171 |
| N3—H3B···O8vi | 0.90 | 1.89 | 2.755 (2) | 161 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O7—H7⋯O2i | 0.82 | 1.72 | 2.5204 (16) | 166 |
| O9—H9⋯O3ii | 0.82 | 1.75 | 2.5495 (17) | 164 |
| N2—H2 | 0.90 | 1.98 | 2.8629 (19) | 166 |
| N2—H2 | 0.90 | 2.01 | 2.7823 (17) | 143 |
| N3—H3 | 0.90 | 1.83 | 2.7220 (18) | 171 |
| N3—H3 | 0.90 | 1.89 | 2.755 (2) | 161 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .