Literature DB >> 21579468

(3aR*,6S*,7S*,7aR*)-2-(4-Methoxy-benz-yl)-7-(4-nitro-phen-yl)-6-phenyl-3a,6,7,7a-tetra-hydro-isoindolin-1-one.

Jian Zhao1, Jin-Long Wu.   

Abstract

The title compound, C(28)H(26)N(2)O(4), crystallizes as a racemate with four stereogenic centers. In the molecule, the pyrrolidone ring adopts an envelope conformation and the cyclo-hexene ring has a twisted envelope conformation. In the crystal structure, mol-ecules are linked by weak inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21579468      PMCID: PMC2979435          DOI: 10.1107/S1600536810017010

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bioactive compounds, see: Walling et al. (1988 ▶); Liu et al. (2006 ▶, 2008 ▶). For microwave-assisted intra­molecular Diels–Alder cyclo­addition, see: Wang et al. (2009 ▶); Wu et al. (2006 ▶, 2007 ▶). For the synthesis of title compound, see: Wu et al. (2009 ▶).

Experimental

Crystal data

C28H26N2O4 M = 454.51 Triclinic, a = 5.4369 (4) Å b = 12.2662 (7) Å c = 18.149 (1) Å α = 79.633 (1)° β = 84.036 (2)° γ = 80.325 (2)° V = 1170.25 (13) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.37 × 0.31 × 0.18 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.967, T max = 0.985 11469 measured reflections 5285 independent reflections 3402 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.123 S = 1.01 5285 reflections 309 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.22 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810017010/lx2150sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810017010/lx2150Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H26N2O4Z = 2
Mr = 454.51F(000) = 480
Triclinic, P1Dx = 1.290 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.4369 (4) ÅCell parameters from 7298 reflections
b = 12.2662 (7) Åθ = 3.1–27.4°
c = 18.149 (1) ŵ = 0.09 mm1
α = 79.633 (1)°T = 296 K
β = 84.036 (2)°Block, colorless
γ = 80.325 (2)°0.37 × 0.31 × 0.18 mm
V = 1170.25 (13) Å3
Rigaku R-AXIS RAPID diffractometer5285 independent reflections
Radiation source: rotating anode3402 reflections with I > 2σ(I)
graphiteRint = 0.024
Detector resolution: 10.00 pixels mm-1θmax = 27.4°, θmin = 3.1°
ω scansh = −7→7
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −15→15
Tmin = 0.967, Tmax = 0.985l = −23→23
11469 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.123w = 1/[σ2(Fo2) + (0.041P)2 + 0.4229P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
5285 reflectionsΔρmax = 0.23 e Å3
309 parametersΔρmin = −0.22 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.030 (2)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.3920 (3)0.60330 (10)0.32284 (8)0.0562 (4)
C3−0.0091 (3)0.63563 (13)0.20272 (9)0.0372 (4)
H3−0.14340.61280.23960.045*
C90.0145 (3)0.75414 (13)0.21103 (9)0.0354 (4)
O4−0.0827 (3)0.11519 (11)0.56486 (8)0.0626 (4)
C10−0.1747 (3)0.81473 (14)0.25156 (10)0.0437 (4)
H10−0.31070.78100.27430.052*
C4−0.0937 (3)0.62877 (14)0.12304 (10)0.0403 (4)
H4−0.27050.66220.12270.048*
C20.2183 (3)0.54638 (12)0.21746 (9)0.0345 (4)
H20.33940.55600.17380.041*
N10.4524 (3)0.42079 (11)0.30303 (8)0.0451 (4)
C130.2321 (3)0.91472 (14)0.18609 (10)0.0422 (4)
H130.36880.94860.16430.051*
C140.2179 (3)0.80600 (13)0.17894 (10)0.0410 (4)
H140.34710.76650.15210.049*
C250.0719 (4)0.18191 (15)0.52078 (10)0.0463 (4)
C11−0.1642 (4)0.92434 (15)0.25872 (11)0.0510 (5)
H11−0.29300.96480.28510.061*
C120.0403 (3)0.97220 (13)0.22604 (10)0.0429 (4)
C150.0421 (3)0.69472 (14)0.05692 (10)0.0417 (4)
C10.3594 (3)0.53126 (13)0.28773 (9)0.0391 (4)
C260.0549 (4)0.29610 (15)0.51910 (11)0.0532 (5)
H26−0.06760.33330.54940.064*
C5−0.0810 (3)0.50875 (15)0.11146 (11)0.0454 (4)
H5−0.15590.49710.07030.054*
C70.1409 (3)0.43048 (13)0.22418 (10)0.0415 (4)
H70.00910.42500.26520.050*
C220.4095 (3)0.30153 (14)0.42622 (10)0.0444 (4)
C60.0281 (3)0.41877 (15)0.15518 (11)0.0473 (4)
H60.03420.34810.14270.057*
N20.0562 (4)1.08752 (13)0.23437 (11)0.0613 (5)
C270.2232 (4)0.35445 (15)0.47165 (11)0.0531 (5)
H270.21070.43130.47030.064*
C240.2572 (4)0.12738 (15)0.47615 (11)0.0541 (5)
H240.26930.05050.47740.065*
O2−0.1207 (4)1.14155 (13)0.26491 (12)0.0936 (6)
C230.4236 (4)0.18681 (15)0.42990 (11)0.0518 (5)
H230.54820.14910.40050.062*
C80.3733 (4)0.35368 (14)0.25297 (11)0.0486 (5)
H8A0.33360.28240.28020.058*
H8B0.49990.34050.21240.058*
O30.2473 (4)1.12510 (13)0.20977 (13)0.0982 (7)
C200.2721 (4)0.65034 (17)0.02460 (10)0.0491 (4)
H200.34440.57770.04330.059*
C210.5791 (4)0.36794 (16)0.37105 (11)0.0507 (5)
H21A0.62820.42530.39440.061*
H21B0.72940.31850.35750.061*
C16−0.0606 (4)0.80281 (17)0.02643 (12)0.0608 (5)
H16−0.21470.83470.04650.073*
C28−0.2937 (4)0.16809 (19)0.60542 (12)0.0601 (5)
H28A−0.23780.20320.64250.090*
H28B−0.39490.11300.62970.090*
H28C−0.39060.22380.57140.090*
C190.3949 (5)0.7124 (2)−0.03484 (12)0.0679 (6)
H190.54960.6816−0.05510.081*
C170.0632 (6)0.8639 (2)−0.03356 (14)0.0801 (8)
H17−0.00870.9362−0.05330.096*
C180.2906 (6)0.8187 (2)−0.06392 (14)0.0814 (8)
H180.37330.8601−0.10400.098*
U11U22U33U12U13U23
O10.0704 (9)0.0431 (7)0.0610 (8)−0.0104 (6)−0.0178 (7)−0.0151 (6)
C30.0321 (9)0.0353 (8)0.0455 (9)−0.0097 (7)0.0068 (7)−0.0113 (7)
C90.0323 (9)0.0350 (8)0.0391 (9)−0.0052 (6)0.0006 (7)−0.0089 (7)
O40.0693 (10)0.0519 (8)0.0665 (9)−0.0207 (7)0.0211 (7)−0.0142 (7)
C100.0363 (9)0.0427 (9)0.0534 (10)−0.0074 (7)0.0062 (8)−0.0157 (8)
C40.0284 (9)0.0415 (9)0.0527 (10)−0.0055 (7)−0.0021 (7)−0.0126 (8)
C20.0352 (9)0.0305 (8)0.0378 (8)−0.0085 (6)0.0042 (7)−0.0062 (7)
N10.0567 (10)0.0342 (7)0.0440 (8)−0.0094 (7)−0.0054 (7)−0.0021 (6)
C130.0399 (10)0.0366 (8)0.0505 (10)−0.0101 (7)−0.0004 (8)−0.0058 (8)
C140.0325 (9)0.0373 (8)0.0536 (10)−0.0056 (7)0.0066 (7)−0.0143 (8)
C250.0514 (11)0.0427 (9)0.0447 (10)−0.0115 (8)0.0029 (8)−0.0067 (8)
C110.0441 (11)0.0470 (10)0.0634 (12)−0.0027 (8)0.0085 (9)−0.0240 (9)
C120.0482 (11)0.0302 (8)0.0516 (10)−0.0028 (7)−0.0070 (8)−0.0116 (8)
C150.0423 (10)0.0425 (9)0.0439 (9)−0.0097 (7)−0.0091 (8)−0.0105 (8)
C10.0404 (10)0.0347 (8)0.0430 (9)−0.0122 (7)0.0042 (7)−0.0065 (7)
C260.0549 (12)0.0434 (10)0.0580 (12)−0.0023 (9)0.0089 (9)−0.0120 (9)
C50.0419 (10)0.0475 (10)0.0535 (10)−0.0161 (8)−0.0042 (8)−0.0175 (9)
C70.0470 (10)0.0330 (8)0.0467 (10)−0.0144 (7)0.0051 (8)−0.0093 (7)
C220.0454 (11)0.0403 (9)0.0446 (10)−0.0052 (8)−0.0064 (8)0.0014 (8)
C60.0497 (11)0.0393 (9)0.0590 (11)−0.0180 (8)0.0013 (9)−0.0175 (9)
N20.0682 (12)0.0380 (8)0.0807 (13)−0.0074 (8)−0.0033 (10)−0.0200 (9)
C270.0619 (13)0.0339 (9)0.0602 (12)−0.0049 (8)0.0016 (10)−0.0055 (9)
C240.0660 (13)0.0351 (9)0.0590 (12)−0.0079 (9)0.0096 (10)−0.0097 (9)
O20.0970 (14)0.0506 (9)0.1350 (16)−0.0010 (9)0.0198 (12)−0.0457 (10)
C230.0573 (12)0.0421 (10)0.0519 (11)−0.0028 (8)0.0080 (9)−0.0081 (9)
C80.0625 (12)0.0324 (8)0.0509 (11)−0.0080 (8)−0.0036 (9)−0.0069 (8)
O30.0893 (13)0.0558 (9)0.1607 (19)−0.0331 (9)0.0210 (13)−0.0445 (11)
C200.0476 (11)0.0564 (11)0.0470 (10)−0.0139 (9)−0.0005 (8)−0.0146 (9)
C210.0492 (11)0.0485 (10)0.0512 (11)−0.0102 (8)−0.0058 (9)0.0035 (9)
C160.0701 (14)0.0524 (11)0.0585 (12)−0.0043 (10)−0.0128 (11)−0.0055 (10)
C280.0536 (13)0.0750 (14)0.0512 (12)−0.0146 (10)0.0070 (10)−0.0106 (10)
C190.0690 (15)0.0910 (17)0.0500 (12)−0.0321 (13)0.0083 (11)−0.0174 (12)
C170.121 (2)0.0580 (13)0.0596 (14)−0.0195 (14)−0.0225 (15)0.0097 (11)
C180.106 (2)0.0889 (18)0.0527 (14)−0.0455 (17)−0.0008 (14)0.0034 (13)
O1—C11.2235 (19)C26—H260.9300
C3—C91.516 (2)C5—C61.328 (3)
C3—C21.519 (2)C5—H50.9300
C3—C41.583 (2)C7—C61.489 (2)
C3—H30.9800C7—C81.522 (3)
C9—C101.391 (2)C7—H70.9800
C9—C141.392 (2)C22—C231.386 (2)
O4—C251.368 (2)C22—C271.388 (3)
O4—C281.423 (2)C22—C211.511 (2)
C10—C111.385 (2)C6—H60.9300
C10—H100.9300N2—O21.216 (2)
C4—C51.513 (2)N2—O31.217 (2)
C4—C151.519 (2)C27—H270.9300
C4—H40.9800C24—C231.378 (3)
C2—C11.523 (2)C24—H240.9300
C2—C71.530 (2)C23—H230.9300
C2—H20.9800C8—H8A0.9700
N1—C11.354 (2)C8—H8B0.9700
N1—C81.469 (2)C20—C191.384 (3)
N1—C211.469 (2)C20—H200.9300
C13—C121.375 (2)C21—H21A0.9700
C13—C141.378 (2)C21—H21B0.9700
C13—H130.9300C16—C171.387 (3)
C14—H140.9300C16—H160.9300
C25—C261.383 (2)C28—H28A0.9600
C25—C241.385 (3)C28—H28B0.9600
C11—C121.375 (2)C28—H28C0.9600
C11—H110.9300C19—C181.366 (4)
C12—N21.467 (2)C19—H190.9300
C15—C161.388 (3)C17—C181.370 (4)
C15—C201.392 (3)C17—H170.9300
C26—C271.387 (3)C18—H180.9300
C9—C3—C2117.16 (13)C6—C7—C2111.36 (14)
C9—C3—C4112.57 (13)C8—C7—C2101.77 (13)
C2—C3—C4107.27 (12)C6—C7—H7106.7
C9—C3—H3106.4C8—C7—H7106.7
C2—C3—H3106.4C2—C7—H7106.7
C4—C3—H3106.4C23—C22—C27117.55 (17)
C10—C9—C14118.12 (15)C23—C22—C21121.30 (17)
C10—C9—C3119.26 (14)C27—C22—C21121.02 (16)
C14—C9—C3122.61 (14)C5—C6—C7120.34 (15)
C25—O4—C28117.97 (15)C5—C6—H6119.8
C11—C10—C9121.17 (16)C7—C6—H6119.8
C11—C10—H10119.4O2—N2—O3122.85 (17)
C9—C10—H10119.4O2—N2—C12119.12 (18)
C5—C4—C15110.34 (14)O3—N2—C12118.03 (17)
C5—C4—C3111.94 (14)C26—C27—C22121.97 (17)
C15—C4—C3114.83 (13)C26—C27—H27119.0
C5—C4—H4106.4C22—C27—H27119.0
C15—C4—H4106.4C23—C24—C25120.09 (17)
C3—C4—H4106.4C23—C24—H24120.0
C3—C2—C1122.36 (13)C25—C24—H24120.0
C3—C2—C7109.16 (13)C24—C23—C22121.43 (17)
C1—C2—C7101.14 (13)C24—C23—H23119.3
C3—C2—H2107.8C22—C23—H23119.3
C1—C2—H2107.8N1—C8—C7100.71 (13)
C7—C2—H2107.8N1—C8—H8A111.6
C1—N1—C8113.54 (14)C7—C8—H8A111.6
C1—N1—C21123.90 (15)N1—C8—H8B111.6
C8—N1—C21121.57 (14)C7—C8—H8B111.6
C12—C13—C14118.76 (16)H8A—C8—H8B109.4
C12—C13—H13120.6C19—C20—C15121.2 (2)
C14—C13—H13120.6C19—C20—H20119.4
C13—C14—C9121.40 (16)C15—C20—H20119.4
C13—C14—H14119.3N1—C21—C22110.87 (15)
C9—C14—H14119.3N1—C21—H21A109.5
O4—C25—C26124.70 (17)C22—C21—H21A109.5
O4—C25—C24115.44 (16)N1—C21—H21B109.5
C26—C25—C24119.85 (17)C22—C21—H21B109.5
C12—C11—C10118.70 (16)H21A—C21—H21B108.1
C12—C11—H11120.7C17—C16—C15120.9 (2)
C10—C11—H11120.7C17—C16—H16119.5
C13—C12—C11121.85 (15)C15—C16—H16119.5
C13—C12—N2118.85 (16)O4—C28—H28A109.5
C11—C12—N2119.30 (16)O4—C28—H28B109.5
C16—C15—C20117.41 (18)H28A—C28—H28B109.5
C16—C15—C4120.60 (17)O4—C28—H28C109.5
C20—C15—C4121.99 (16)H28A—C28—H28C109.5
O1—C1—N1125.80 (17)H28B—C28—H28C109.5
O1—C1—C2128.05 (15)C18—C19—C20120.5 (2)
N1—C1—C2106.10 (13)C18—C19—H19119.8
C25—C26—C27119.10 (17)C20—C19—H19119.8
C25—C26—H26120.5C18—C17—C16120.5 (2)
C27—C26—H26120.5C18—C17—H17119.7
C6—C5—C4125.40 (16)C16—C17—H17119.7
C6—C5—H5117.3C19—C18—C17119.5 (2)
C4—C5—H5117.3C19—C18—H18120.2
C6—C7—C8122.74 (15)C17—C18—H18120.2
C2—C3—C9—C10−132.93 (17)C15—C4—C5—C6117.7 (2)
C4—C3—C9—C10102.00 (18)C3—C4—C5—C6−11.5 (2)
C2—C3—C9—C1447.7 (2)C3—C2—C7—C657.77 (18)
C4—C3—C9—C14−77.3 (2)C1—C2—C7—C6−172.00 (14)
C14—C9—C10—C111.3 (3)C3—C2—C7—C8−169.81 (14)
C3—C9—C10—C11−178.11 (17)C1—C2—C7—C8−39.58 (16)
C9—C3—C4—C5171.91 (14)C4—C5—C6—C73.0 (3)
C2—C3—C4—C541.60 (17)C8—C7—C6—C5−146.39 (18)
C9—C3—C4—C1545.10 (19)C2—C7—C6—C5−25.6 (2)
C2—C3—C4—C15−85.20 (16)C13—C12—N2—O2174.7 (2)
C9—C3—C2—C149.5 (2)C11—C12—N2—O2−5.7 (3)
C4—C3—C2—C1177.21 (13)C13—C12—N2—O3−4.9 (3)
C9—C3—C2—C7167.06 (14)C11—C12—N2—O3174.6 (2)
C4—C3—C2—C7−65.26 (16)C25—C26—C27—C22−0.5 (3)
C12—C13—C14—C90.2 (3)C23—C22—C27—C26−0.3 (3)
C10—C9—C14—C13−0.7 (3)C21—C22—C27—C26175.68 (18)
C3—C9—C14—C13178.63 (16)O4—C25—C24—C23−179.69 (18)
C28—O4—C25—C267.7 (3)C26—C25—C24—C23−0.3 (3)
C28—O4—C25—C24−172.98 (18)C25—C24—C23—C22−0.6 (3)
C9—C10—C11—C12−1.2 (3)C27—C22—C23—C240.8 (3)
C14—C13—C12—C11−0.1 (3)C21—C22—C23—C24−175.12 (18)
C14—C13—C12—N2179.39 (17)C1—N1—C8—C7−20.81 (19)
C10—C11—C12—C130.7 (3)C21—N1—C8—C7148.23 (16)
C10—C11—C12—N2−178.85 (17)C6—C7—C8—N1161.81 (15)
C5—C4—C15—C16137.20 (17)C2—C7—C8—N136.61 (16)
C3—C4—C15—C16−95.2 (2)C16—C15—C20—C191.0 (3)
C5—C4—C15—C20−42.9 (2)C4—C15—C20—C19−178.91 (16)
C3—C4—C15—C2084.73 (19)C1—N1—C21—C22104.26 (19)
C8—N1—C1—O1177.63 (17)C8—N1—C21—C22−63.6 (2)
C21—N1—C1—O18.9 (3)C23—C22—C21—N196.9 (2)
C8—N1—C1—C2−4.52 (19)C27—C22—C21—N1−79.0 (2)
C21—N1—C1—C2−173.27 (15)C20—C15—C16—C17−0.5 (3)
C3—C2—C1—O1−33.0 (3)C4—C15—C16—C17179.46 (18)
C7—C2—C1—O1−154.41 (18)C15—C20—C19—C18−1.0 (3)
C3—C2—C1—N1149.18 (14)C15—C16—C17—C18−0.2 (4)
C7—C2—C1—N127.81 (16)C20—C19—C18—C170.3 (4)
O4—C25—C26—C27−179.84 (19)C16—C17—C18—C190.2 (4)
C24—C25—C26—C270.8 (3)
D—H···AD—HH···AD···AD—H···A
C8—H8A···O3i0.972.633.239 (2)122
C28—H28A···O1ii0.962.553.242 (2)129
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8A⋯O3i0.972.633.239 (2)122
C28—H28A⋯O1ii0.962.553.242 (2)129

Symmetry codes: (i) ; (ii) .

  4 in total

1.  10-Phenyl-[12]-cytochalasins Z7, Z8, and Z9 from the marine-derived fungus Spicaria elegans.

Authors:  Rui Liu; Qianqun Gu; Weiming Zhu; Chengbin Cui; Guotao Fan; Yuchun Fang; Tianjiao Zhu; Hongbing Liu
Journal:  J Nat Prod       Date:  2006-06       Impact factor: 4.050

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Novel open-chain cytochalsins from the marine-derived fungus Spicaria elegans.

Authors:  Rui Liu; Zhenjian Lin; Tianjiao Zhu; Yuchun Fang; Qianqun Gu; Weiming Zhu
Journal:  J Nat Prod       Date:  2008-05-29       Impact factor: 4.050

4.  Actin assembly activity of cytochalasins and cytochalasin analogs assayed using fluorescence photobleaching recovery.

Authors:  E A Walling; G A Krafft; B R Ware
Journal:  Arch Biochem Biophys       Date:  1988-07       Impact factor: 4.013

  4 in total

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