Literature DB >> 21579462

4-Chloro-N-[3-methyl-1-(5-thioxo-4,5-dihydro-1,3,4-oxadiazol-2-yl)but-yl]benzamide.

Yu-Gang Yan1, Guo-Gang Tu, Ling-Dong Wang, Jian Liu, Shao-Hua Li.   

Abstract

In the title compound, C(14)H(16)ClN(3)O(2)S, the dihedral angle between the 4-chloro-phenyl and 1,3,4-oxadiazole rings is 67.1 (1)° and the orientation of the amide N-H and C=O bonds is anti. In the crystal, mol-ecules are linked by N-H⋯O and N-H⋯S hydrogen bonds.

Entities:  

Year:  2010        PMID: 21579462      PMCID: PMC2979360          DOI: 10.1107/S1600536810017368

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of thia­diazo­les, see: Tu et al. (2008 ▶). For details of the synthesis, see: Ginzel et al. (1989 ▶); Boland et al. (2006 ▶); Havaldar & Patil (2009 ▶); Shriner & Furrow (1955 ▶). For related structures, see: Du et al. (2004 ▶); Ziyaev et al. (1992 ▶); Zareef et al. (2006 ▶).

Experimental

Crystal data

C14H16ClN3O2S M = 325.81 Orthorhombic, a = 6.0171 (6) Å b = 15.3120 (15) Å c = 18.1493 (17) Å V = 1672.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 298 K 0.42 × 0.22 × 0.18 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.864, T max = 0.938 7892 measured reflections 2951 independent reflections 1447 reflections with I > 2σ(I) R int = 0.056

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.108 S = 1.10 2951 reflections 193 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.32 e Å−3 Absolute structure: Flack (1983 ▶), 1219 Friedel pairs Flack parameter: −0.09 (14) Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810017368/hb5439sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810017368/hb5439Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H16ClN3O2SF(000) = 680
Mr = 325.81Dx = 1.294 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2117 reflections
a = 6.0171 (6) Åθ = 2.6–21.7°
b = 15.3120 (15) ŵ = 0.36 mm1
c = 18.1493 (17) ÅT = 298 K
V = 1672.2 (3) Å3Block, colourless
Z = 40.42 × 0.22 × 0.18 mm
Bruker SMART CCD diffractometer2951 independent reflections
Radiation source: fine-focus sealed tube1447 reflections with I > 2σ(I)
graphiteRint = 0.056
ω scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −7→7
Tmin = 0.864, Tmax = 0.938k = −18→11
7892 measured reflectionsl = −21→16
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.050w = 1/[σ2(Fo2) + (0.0147P)2 + 1.0529P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.108(Δ/σ)max < 0.001
S = 1.10Δρmax = 0.31 e Å3
2951 reflectionsΔρmin = −0.32 e Å3
193 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0034 (7)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1219 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: −0.09 (14)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.2875 (3)0.07537 (10)−0.04447 (8)0.1082 (7)
N10.4961 (8)0.5638 (3)0.2486 (2)0.0653 (12)
H10.45530.61750.25150.078*
N20.6705 (8)0.5299 (2)0.2891 (2)0.0679 (12)
N30.9177 (6)0.3351 (2)0.22952 (19)0.0530 (10)
H31.03230.35770.20860.064*
O10.5141 (6)0.4303 (2)0.21792 (16)0.0650 (10)
O20.6632 (6)0.22820 (19)0.23058 (17)0.0672 (10)
S10.1860 (3)0.51382 (10)0.14928 (8)0.0902 (5)
C10.3976 (8)0.5066 (3)0.2049 (2)0.0601 (13)
C20.6745 (10)0.4498 (3)0.2683 (2)0.0555 (13)
C30.8216 (9)0.3780 (3)0.2935 (2)0.0572 (13)
H3A0.72950.33520.31950.069*
C40.9999 (9)0.4102 (3)0.3469 (2)0.0628 (14)
H4A1.08270.45670.32330.075*
H4B0.92710.43480.38980.075*
C51.1631 (10)0.3406 (3)0.3725 (3)0.0793 (17)
H51.24520.32060.32900.095*
C61.3329 (10)0.3803 (4)0.4260 (3)0.097 (2)
H6A1.26040.39480.47150.145*
H6B1.39550.43210.40460.145*
H6C1.44900.33870.43530.145*
C71.0511 (12)0.2623 (4)0.4053 (3)0.129 (3)
H7A0.96450.27990.44710.193*
H7B1.16150.22080.42050.193*
H7C0.95570.23600.36920.193*
C80.8305 (9)0.2601 (3)0.2021 (2)0.0520 (12)
C90.9491 (9)0.2185 (3)0.1398 (3)0.0518 (13)
C100.8393 (9)0.1520 (3)0.1025 (2)0.0575 (13)
H100.69660.13590.11680.069*
C110.9413 (10)0.1093 (3)0.0440 (3)0.0673 (15)
H110.86610.06600.01810.081*
C121.1541 (11)0.1319 (3)0.0247 (3)0.0663 (15)
C131.2613 (9)0.1986 (3)0.0598 (3)0.0681 (15)
H131.40270.21530.04460.082*
C141.1604 (9)0.2411 (3)0.1174 (3)0.0639 (14)
H141.23550.28580.14160.077*
U11U22U33U12U13U23
Cl10.1383 (16)0.0987 (12)0.0876 (10)0.0156 (12)0.0383 (11)−0.0126 (9)
N10.069 (3)0.046 (3)0.081 (3)0.002 (3)−0.002 (3)−0.005 (2)
N20.078 (3)0.047 (3)0.079 (3)0.005 (3)−0.012 (3)−0.004 (2)
N30.050 (3)0.044 (2)0.066 (3)−0.006 (2)0.007 (2)−0.0108 (19)
O10.079 (3)0.045 (2)0.071 (2)0.002 (2)−0.019 (2)−0.0068 (17)
O20.069 (3)0.046 (2)0.086 (2)−0.004 (2)0.016 (2)−0.0039 (17)
S10.0914 (12)0.0756 (10)0.1037 (11)−0.0050 (10)−0.0315 (10)0.0091 (9)
C10.064 (4)0.058 (3)0.058 (3)−0.009 (3)−0.004 (3)−0.002 (3)
C20.074 (4)0.037 (3)0.056 (3)0.004 (3)0.001 (3)−0.005 (2)
C30.072 (4)0.046 (3)0.053 (3)0.001 (3)0.009 (3)−0.002 (2)
C40.074 (4)0.056 (3)0.058 (3)0.001 (3)−0.007 (3)−0.004 (3)
C50.088 (5)0.075 (4)0.074 (4)0.001 (4)−0.015 (4)0.007 (3)
C60.094 (5)0.109 (5)0.088 (4)0.010 (4)−0.017 (4)0.003 (3)
C70.140 (7)0.092 (5)0.154 (6)−0.018 (5)−0.040 (5)0.056 (5)
C80.056 (3)0.043 (3)0.057 (3)0.000 (3)0.000 (3)0.001 (2)
C90.057 (3)0.037 (3)0.062 (3)−0.002 (3)−0.006 (3)−0.003 (2)
C100.062 (4)0.044 (3)0.067 (3)−0.004 (3)0.001 (3)0.002 (2)
C110.097 (5)0.048 (3)0.056 (3)0.001 (3)−0.001 (3)−0.001 (3)
C120.084 (5)0.055 (3)0.059 (3)0.011 (4)0.007 (3)0.005 (3)
C130.063 (4)0.068 (4)0.074 (3)0.005 (3)0.014 (3)0.006 (3)
C140.067 (4)0.051 (3)0.074 (3)−0.003 (3)−0.002 (3)0.000 (3)
Cl1—C121.723 (5)C5—C61.535 (7)
N1—C11.321 (5)C5—H50.9800
N1—N21.382 (5)C6—H6A0.9600
N1—H10.8600C6—H6B0.9600
N2—C21.283 (5)C6—H6C0.9600
N3—C81.357 (5)C7—H7A0.9600
N3—C31.454 (5)C7—H7B0.9600
N3—H30.8600C7—H7C0.9600
O1—C21.363 (5)C8—C91.481 (6)
O1—C11.382 (5)C9—C141.379 (6)
O2—C81.232 (5)C9—C101.390 (6)
S1—C11.629 (5)C10—C111.390 (6)
C2—C31.483 (6)C10—H100.9300
C3—C41.527 (6)C11—C121.372 (7)
C3—H3A0.9800C11—H110.9300
C4—C51.522 (6)C12—C131.366 (6)
C4—H4A0.9700C13—C141.373 (6)
C4—H4B0.9700C13—H130.9300
C5—C71.498 (7)C14—H140.9300
C1—N1—N2114.3 (4)C5—C6—H6B109.5
C1—N1—H1122.9H6A—C6—H6B109.5
N2—N1—H1122.9C5—C6—H6C109.5
C2—N2—N1102.5 (4)H6A—C6—H6C109.5
C8—N3—C3121.5 (4)H6B—C6—H6C109.5
C8—N3—H3119.3C5—C7—H7A109.5
C3—N3—H3119.3C5—C7—H7B109.5
C2—O1—C1106.8 (3)H7A—C7—H7B109.5
N1—C1—O1103.3 (4)C5—C7—H7C109.5
N1—C1—S1132.6 (4)H7A—C7—H7C109.5
O1—C1—S1124.0 (4)H7B—C7—H7C109.5
N2—C2—O1113.1 (5)O2—C8—N3119.8 (4)
N2—C2—C3128.9 (5)O2—C8—C9122.9 (4)
O1—C2—C3117.9 (4)N3—C8—C9117.2 (4)
N3—C3—C2109.0 (3)C14—C9—C10118.6 (5)
N3—C3—C4111.9 (4)C14—C9—C8124.2 (4)
C2—C3—C4112.1 (4)C10—C9—C8117.3 (5)
N3—C3—H3A107.9C11—C10—C9120.4 (5)
C2—C3—H3A107.9C11—C10—H10119.8
C4—C3—H3A107.9C9—C10—H10119.8
C5—C4—C3114.9 (4)C12—C11—C10119.3 (5)
C5—C4—H4A108.5C12—C11—H11120.4
C3—C4—H4A108.5C10—C11—H11120.4
C5—C4—H4B108.5C13—C12—C11120.7 (5)
C3—C4—H4B108.5C13—C12—Cl1119.7 (5)
H4A—C4—H4B107.5C11—C12—Cl1119.6 (5)
C7—C5—C4113.0 (5)C12—C13—C14120.1 (5)
C7—C5—C6111.4 (5)C12—C13—H13120.0
C4—C5—C6110.2 (4)C14—C13—H13120.0
C7—C5—H5107.3C13—C14—C9120.9 (5)
C4—C5—H5107.3C13—C14—H14119.6
C6—C5—H5107.3C9—C14—H14119.6
C5—C6—H6A109.5
C1—N1—N2—C20.1 (6)C3—C4—C5—C6−179.7 (4)
N2—N1—C1—O10.3 (5)C3—N3—C8—O21.7 (7)
N2—N1—C1—S1178.2 (4)C3—N3—C8—C9−176.2 (4)
C2—O1—C1—N1−0.5 (5)O2—C8—C9—C14−165.1 (4)
C2—O1—C1—S1−178.7 (3)N3—C8—C9—C1412.7 (7)
N1—N2—C2—O1−0.5 (5)O2—C8—C9—C1014.3 (7)
N1—N2—C2—C3−178.1 (5)N3—C8—C9—C10−167.9 (4)
C1—O1—C2—N20.7 (5)C14—C9—C10—C110.1 (7)
C1—O1—C2—C3178.6 (4)C8—C9—C10—C11−179.3 (4)
C8—N3—C3—C2−98.1 (5)C9—C10—C11—C121.8 (7)
C8—N3—C3—C4137.4 (4)C10—C11—C12—C13−3.5 (7)
N2—C2—C3—N3−129.7 (5)C10—C11—C12—Cl1176.5 (3)
O1—C2—C3—N352.8 (6)C11—C12—C13—C143.2 (8)
N2—C2—C3—C4−5.2 (8)Cl1—C12—C13—C14−176.7 (4)
O1—C2—C3—C4177.2 (4)C12—C13—C14—C9−1.2 (7)
N3—C3—C4—C5−54.7 (6)C10—C9—C14—C13−0.4 (7)
C2—C3—C4—C5−177.5 (4)C8—C9—C14—C13178.9 (4)
C3—C4—C5—C7−54.3 (6)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.861.872.720 (6)171
N3—H3···S1ii0.862.783.495 (4)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O2i0.861.872.720 (6)171
N3—H3⋯S1ii0.862.783.495 (4)142

Symmetry codes: (i) ; (ii) .

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