Literature DB >> 21579457

Phen-yl(pyrrolo[2,1-a]isoquinolin-3-yl)methanone.

Yun Liu, Hong Jiang.   

Abstract

In the title compound, C(19)H(13)NO, the fused isoquinoline-pyrrole system is planar (r.m.s. deviation = 0.0249] Å) and makes a dihedral angle of 53.73 (9)° with the phenyl ring. An intra-molecular C-H⋯O inter-action generates an S(6) ring motif.

Entities:  

Year:  2010        PMID: 21579457      PMCID: PMC2979433          DOI: 10.1107/S1600536810017101

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of indolizine, see: Olden et al. (1991 ▶); Jaffrezou et al. (1992 ▶). For our work on the direct one-pot syntheses of pyrrolo[2,1-a]isoquinolines, see: Liu et al. (2010 ▶). For the preparation of pyrrolo[2,1-a]isoquinoline, see: Verna et al. (2009 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C19H13NO M = 271.30 Monoclinic, a = 28.637 (6) Å b = 4.0400 (8) Å c = 11.824 (2) Å β = 101.02 (3)° V = 1342.7 (5) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 295 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (XCAD4; Harms & Wocadlo, 1995 ▶) T min = 0.976, T max = 0.992 2351 measured reflections 2351 independent reflections 1388 reflections with I > 2σ(I) 3 standard reflections every 200 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.072 wR(F 2) = 0.139 S = 1.00 2351 reflections 190 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810017101/ds2027sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810017101/ds2027Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H13NOF(000) = 568
Mr = 271.30Dx = 1.342 Mg m3
Monoclinic, P21/cMelting point: 413 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 28.637 (6) ÅCell parameters from 25 reflections
b = 4.0400 (8) Åθ = 9–12°
c = 11.824 (2) ŵ = 0.08 mm1
β = 101.02 (3)°T = 295 K
V = 1342.7 (5) Å3Block, colourless
Z = 40.30 × 0.20 × 0.10 mm
Enraf–Nonius CAD-4 diffractometer1388 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.0000
graphiteθmax = 25.0°, θmin = 1.5°
ω/2θ scansh = −34→33
Absorption correction: ψ scan (XCAD4; Harms & Wocadlo, 1995)k = 0→4
Tmin = 0.976, Tmax = 0.992l = 0→14
2351 measured reflections3 standard reflections every 200 reflections
2351 independent reflections intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.072H-atom parameters constrained
wR(F2) = 0.139w = 1/[σ2(Fo2) + (0.015P)2 + 2.250P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
2351 reflectionsΔρmax = 0.23 e Å3
190 parametersΔρmin = −0.29 e Å3
0 restraintsAbsolute structure: (XCAD4; Harms & Wocadlo, 1995)
Primary atom site location: structure-invariant direct methods
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N0.22455 (9)0.5534 (7)0.9319 (2)0.0382 (7)
C110.19331 (11)0.4146 (9)0.9955 (3)0.0402 (9)
C70.31218 (12)0.5686 (10)0.9370 (3)0.0485 (10)
O0.30873 (9)0.6625 (9)0.8377 (2)0.0725 (10)
C120.14286 (12)0.4449 (10)0.9532 (3)0.0447 (9)
C30.36071 (11)0.5108 (10)1.0092 (3)0.0453 (9)
C80.27112 (11)0.4828 (9)0.9873 (3)0.0402 (9)
C190.20843 (12)0.7328 (10)0.8334 (3)0.0461 (9)
H19A0.23020.83090.79470.055*
C180.16185 (12)0.7680 (10)0.7927 (3)0.0513 (10)
H18A0.15170.89290.72650.062*
C20.37259 (12)0.6034 (10)1.1233 (3)0.0521 (10)
H2A0.34960.69351.16000.062*
C170.12699 (12)0.6158 (10)0.8496 (3)0.0483 (10)
C90.26796 (12)0.3050 (10)1.0848 (3)0.0458 (9)
H9A0.29360.22841.13890.055*
C100.22029 (12)0.2579 (10)1.0897 (3)0.0477 (10)
H10A0.20860.14161.14620.057*
C130.10950 (12)0.3043 (10)1.0117 (3)0.0528 (10)
H13A0.11970.18781.07980.063*
C140.06138 (14)0.3388 (13)0.9681 (4)0.0706 (14)
H14A0.03930.24981.00800.085*
C160.07802 (13)0.6403 (12)0.8072 (3)0.0628 (12)
H16A0.06720.75090.73820.075*
C60.45267 (14)0.4265 (12)1.1284 (4)0.0711 (13)
H6A0.48370.39901.16840.085*
C150.04577 (15)0.5046 (13)0.8655 (4)0.0711 (14)
H15A0.01340.52380.83610.085*
C40.39519 (13)0.3782 (11)0.9543 (3)0.0567 (11)
H4A0.38750.32070.87690.068*
C50.44071 (14)0.3323 (12)1.0152 (4)0.0684 (13)
H5A0.46350.23650.97920.082*
C10.41862 (13)0.5626 (12)1.1833 (3)0.0650 (12)
H1A0.42670.62631.26020.078*
U11U22U33U12U13U23
N0.0359 (15)0.0496 (19)0.0307 (13)0.0024 (15)0.0101 (11)−0.0003 (15)
C110.0396 (19)0.048 (2)0.0360 (17)−0.0023 (18)0.0148 (15)−0.0037 (18)
C70.046 (2)0.064 (3)0.0387 (18)0.013 (2)0.0169 (16)0.007 (2)
O0.0555 (17)0.117 (3)0.0500 (15)0.0072 (19)0.0227 (13)0.0212 (19)
C120.0393 (19)0.050 (2)0.047 (2)−0.0018 (19)0.0148 (16)−0.013 (2)
C30.0328 (18)0.058 (3)0.049 (2)0.0002 (19)0.0162 (16)0.007 (2)
C80.0398 (19)0.050 (2)0.0334 (17)0.0048 (18)0.0122 (14)0.0029 (18)
C190.051 (2)0.057 (3)0.0318 (17)0.006 (2)0.0117 (15)0.0012 (19)
C180.049 (2)0.064 (3)0.0399 (19)0.017 (2)0.0073 (16)0.009 (2)
C20.043 (2)0.062 (3)0.054 (2)−0.002 (2)0.0160 (17)0.000 (2)
C170.0379 (19)0.061 (3)0.046 (2)0.008 (2)0.0071 (15)−0.010 (2)
C90.0394 (19)0.060 (3)0.0387 (18)0.008 (2)0.0095 (15)0.0068 (19)
C100.045 (2)0.061 (3)0.0396 (18)−0.007 (2)0.0161 (15)0.006 (2)
C130.046 (2)0.057 (3)0.059 (2)−0.008 (2)0.0191 (18)−0.010 (2)
C140.041 (2)0.091 (4)0.085 (3)−0.015 (3)0.026 (2)−0.028 (3)
C160.046 (2)0.075 (3)0.064 (2)0.012 (2)0.0013 (19)−0.008 (3)
C60.040 (2)0.082 (4)0.090 (3)−0.004 (2)0.008 (2)0.022 (3)
C150.042 (2)0.083 (4)0.086 (3)0.003 (3)0.007 (2)−0.027 (3)
C40.046 (2)0.064 (3)0.066 (2)0.003 (2)0.0244 (19)−0.002 (2)
C50.048 (2)0.068 (3)0.097 (3)0.006 (2)0.033 (2)0.005 (3)
C10.048 (2)0.085 (3)0.060 (2)−0.012 (3)0.0059 (19)0.003 (3)
N—C191.374 (4)C17—C161.399 (5)
N—C111.392 (4)C9—C101.390 (4)
N—C81.399 (4)C9—H9A0.9300
C11—C101.382 (5)C10—H10A0.9300
C11—C121.441 (4)C13—C141.383 (5)
C7—O1.220 (4)C13—H13A0.9300
C7—C81.458 (4)C14—C151.383 (6)
C7—C31.504 (5)C14—H14A0.9300
C12—C131.402 (5)C16—C151.368 (6)
C12—C171.404 (5)C16—H16A0.9300
C3—C21.379 (5)C6—C51.371 (5)
C3—C41.388 (4)C6—C11.385 (5)
C8—C91.376 (4)C6—H6A0.9300
C19—C181.336 (4)C15—H15A0.9300
C19—H19A0.9300C4—C51.376 (5)
C18—C171.444 (5)C4—H4A0.9300
C18—H18A0.9300C5—H5A0.9300
C2—C11.382 (5)C1—H1A0.9300
C2—H2A0.9300
C19—N—C11121.6 (3)C8—C9—C10109.2 (3)
C19—N—C8129.8 (3)C8—C9—H9A125.4
C11—N—C8108.5 (3)C10—C9—H9A125.4
C10—C11—N107.6 (3)C11—C10—C9107.8 (3)
C10—C11—C12133.4 (3)C11—C10—H10A126.1
N—C11—C12118.9 (3)C9—C10—H10A126.1
O—C7—C8123.0 (3)C14—C13—C12120.0 (4)
O—C7—C3119.4 (3)C14—C13—H13A120.0
C8—C7—C3117.4 (3)C12—C13—H13A120.0
C13—C12—C17119.5 (3)C13—C14—C15120.5 (4)
C13—C12—C11121.8 (3)C13—C14—H14A119.7
C17—C12—C11118.7 (3)C15—C14—H14A119.7
C2—C3—C4119.8 (3)C15—C16—C17121.2 (4)
C2—C3—C7122.8 (3)C15—C16—H16A119.4
C4—C3—C7117.2 (3)C17—C16—H16A119.4
C9—C8—N106.9 (3)C5—C6—C1120.1 (4)
C9—C8—C7130.8 (3)C5—C6—H6A119.9
N—C8—C7122.1 (3)C1—C6—H6A119.9
C18—C19—N120.8 (3)C16—C15—C14120.0 (4)
C18—C19—H19A119.6C16—C15—H15A120.0
N—C19—H19A119.6C14—C15—H15A120.0
C19—C18—C17121.2 (3)C5—C4—C3119.7 (4)
C19—C18—H18A119.4C5—C4—H4A120.2
C17—C18—H18A119.4C3—C4—H4A120.2
C3—C2—C1120.2 (4)C6—C5—C4120.5 (4)
C3—C2—H2A119.9C6—C5—H5A119.7
C1—C2—H2A119.9C4—C5—H5A119.7
C16—C17—C12118.8 (4)C6—C1—C2119.6 (4)
C16—C17—C18122.5 (4)C6—C1—H1A120.2
C12—C17—C18118.6 (3)C2—C1—H1A120.2
C19—N—C11—C10−178.7 (3)C13—C12—C17—C16−0.1 (6)
C8—N—C11—C10−0.2 (4)C11—C12—C17—C16178.8 (4)
C19—N—C11—C123.5 (5)C13—C12—C17—C18178.0 (4)
C8—N—C11—C12−178.0 (3)C11—C12—C17—C18−3.0 (5)
C10—C11—C12—C131.4 (7)C19—C18—C17—C16−178.2 (4)
N—C11—C12—C13178.5 (3)C19—C18—C17—C123.8 (6)
C10—C11—C12—C17−177.5 (4)N—C8—C9—C101.2 (4)
N—C11—C12—C17−0.4 (5)C7—C8—C9—C10−173.2 (4)
O—C7—C3—C2138.8 (4)N—C11—C10—C90.9 (4)
C8—C7—C3—C2−46.0 (6)C12—C11—C10—C9178.2 (4)
O—C7—C3—C4−36.8 (6)C8—C9—C10—C11−1.3 (5)
C8—C7—C3—C4138.3 (4)C17—C12—C13—C14−1.0 (6)
C19—N—C8—C9177.8 (3)C11—C12—C13—C14−179.9 (4)
C11—N—C8—C9−0.6 (4)C12—C13—C14—C151.6 (7)
C19—N—C8—C7−7.2 (6)C12—C17—C16—C150.7 (6)
C11—N—C8—C7174.4 (3)C18—C17—C16—C15−177.3 (4)
O—C7—C8—C9162.9 (4)C17—C16—C15—C14−0.2 (7)
C3—C7—C8—C9−12.1 (6)C13—C14—C15—C16−1.0 (7)
O—C7—C8—N−10.8 (6)C2—C3—C4—C51.7 (6)
C3—C7—C8—N174.2 (3)C7—C3—C4—C5177.5 (4)
C11—N—C19—C18−2.9 (5)C1—C6—C5—C41.4 (7)
C8—N—C19—C18178.9 (4)C3—C4—C5—C6−2.2 (7)
N—C19—C18—C17−0.8 (6)C5—C6—C1—C2−0.1 (7)
C4—C3—C2—C1−0.4 (6)C3—C2—C1—C6−0.4 (7)
C7—C3—C2—C1−175.9 (4)
D—H···AD—HH···AD···AD—H···A
C19—H19A···O0.932.312.875 (4)119
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C19—H19A⋯O0.932.312.875 (4)119
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A copper-catalyzed tandem synthesis of indolo- and pyrrolo[2,1-a]isoquinolines.

Authors:  Akhilesh Kumar Verma; Tanay Kesharwani; Jaspal Singh; Vibha Tandon; Richard C Larock
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

Review 3.  The potential importance of swainsonine in therapy for cancers and immunology.

Authors:  K Olden; P Breton; K Grzegorzewski; Y Yasuda; B L Gause; O A Oredipe; S A Newton; S L White
Journal:  Pharmacol Ther       Date:  1991       Impact factor: 12.310

4.  In vitro and in vivo enhancement of ricin-A chain immunotoxin activity by novel indolizine calcium channel blockers: delayed intracellular degradation linked to lipidosis induction.

Authors:  J P Jaffrézou; T Levade; O Thurneyssen; M Chiron; C Bordier; M Attal; P Chatelain; G Laurent
Journal:  Cancer Res       Date:  1992-03-01       Impact factor: 12.701

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.