Literature DB >> 21579413

1,10-Phenanthroline-dithio-oxamide (2/1).

Hoong-Kun Fun, Wan-Sin Loh, Annada C Maity, Shyamaprosad Goswami.   

Abstract

The asymmetric unit of the title compound, C(12)H(8)N(2)·0.5C(2)H(4)N(2)S(2), contains one 1,10-phenanthroline mol-ecule and a half-mol-ecule of dithio-oxamide, which lies across a crystallographic inversion center. The 1,10-phenanthroline unit is not strictly planar, with dihedral angles between the central benzene ring and the pyridine rings of 1.42 (10) and 1.40 (10)°. In the crystal structure, two 1,10-phenanthroline mol-ecules are linked together by one dithio-oxamide via inter-molecular N-H⋯N hydrogen bonds.

Entities:  

Year:  2010        PMID: 21579413      PMCID: PMC2979584          DOI: 10.1107/S1600536810016405

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemistry of 1,10-phenanthroline, see: Goswami et al. (2005 ▶); Han et al. (2009 ▶); Ishida et al. (2010 ▶). For a related structure, see: Fun et al. (2010 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C12H8N2·0.5C2H4N2S2 M = 240.30 Monoclinic, a = 10.5481 (3) Å b = 10.0544 (3) Å c = 13.9960 (4) Å β = 130.145 (2)° V = 1134.65 (6) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 100 K 0.28 × 0.26 × 0.10 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.931, T max = 0.974 22512 measured reflections 3374 independent reflections 2307 reflections with I > 2σ(I) R int = 0.074

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.160 S = 1.07 3374 reflections 162 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.24 e Å−3 Δρmin = −0.40 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810016405/lh5039sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810016405/lh5039Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H8N2·0.5C2H4N2S2F(000) = 500
Mr = 240.30Dx = 1.407 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5115 reflections
a = 10.5481 (3) Åθ = 2.5–30.1°
b = 10.0544 (3) ŵ = 0.26 mm1
c = 13.9960 (4) ÅT = 100 K
β = 130.145 (2)°Block, orange
V = 1134.65 (6) Å30.28 × 0.26 × 0.10 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3374 independent reflections
Radiation source: fine-focus sealed tube2307 reflections with I > 2σ(I)
graphiteRint = 0.074
φ and ω scansθmax = 30.3°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −14→14
Tmin = 0.931, Tmax = 0.974k = −14→13
22512 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.160H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0764P)2 + 0.8154P] where P = (Fo2 + 2Fc2)/3
3374 reflections(Δ/σ)max < 0.001
162 parametersΔρmax = 1.24 e Å3
0 restraintsΔρmin = −0.40 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.3548 (2)0.2611 (2)0.34019 (17)0.0185 (4)
N20.5551 (2)0.4592 (2)0.36522 (18)0.0217 (4)
N30.8022 (2)0.9404 (2)0.36819 (19)0.0201 (4)
C10.2582 (3)0.1675 (2)0.3304 (2)0.0217 (5)
H1A0.15910.14820.25120.026*
C20.2959 (3)0.0962 (2)0.4317 (2)0.0234 (5)
H2A0.22410.03130.41980.028*
C30.4421 (3)0.1243 (3)0.5494 (2)0.0247 (5)
H3A0.46980.07910.61860.030*
C40.5493 (3)0.2219 (2)0.5643 (2)0.0193 (5)
C50.7051 (3)0.2534 (3)0.6845 (2)0.0240 (5)
H5A0.73820.20720.75490.029*
C60.8035 (3)0.3489 (3)0.6961 (2)0.0236 (5)
H6A0.90440.36700.77460.028*
C70.7561 (3)0.4235 (2)0.5902 (2)0.0193 (5)
C80.8544 (3)0.5272 (3)0.6009 (2)0.0248 (5)
H8A0.95280.55080.67900.030*
C90.8045 (3)0.5928 (3)0.4964 (3)0.0277 (6)
H9A0.86880.66040.50150.033*
C100.6528 (3)0.5553 (3)0.3803 (2)0.0267 (5)
H10A0.61900.60110.30950.032*
C110.6054 (3)0.3938 (2)0.4689 (2)0.0182 (5)
C120.4998 (3)0.2896 (2)0.4565 (2)0.0170 (4)
C130.9644 (3)0.9392 (2)0.4567 (2)0.0196 (5)
S11.08871 (7)0.81821 (6)0.47638 (6)0.02354 (18)
H3C0.752 (4)0.884 (3)0.314 (3)0.030 (8)*
H3B0.754 (4)1.004 (3)0.366 (3)0.032 (8)*
U11U22U33U12U13U23
N10.0163 (8)0.0198 (10)0.0163 (9)−0.0001 (7)0.0091 (7)−0.0012 (7)
N20.0213 (9)0.0205 (10)0.0208 (9)−0.0015 (8)0.0125 (8)0.0007 (8)
N30.0170 (9)0.0203 (11)0.0173 (9)−0.0006 (8)0.0085 (8)−0.0037 (8)
C10.0182 (9)0.0207 (12)0.0216 (11)−0.0002 (9)0.0108 (9)−0.0009 (9)
C20.0224 (10)0.0200 (12)0.0290 (12)−0.0002 (9)0.0171 (10)0.0038 (10)
C30.0234 (11)0.0260 (13)0.0237 (12)0.0047 (9)0.0148 (10)0.0081 (10)
C40.0183 (9)0.0211 (12)0.0172 (10)0.0025 (8)0.0108 (8)0.0014 (9)
C50.0203 (10)0.0314 (14)0.0149 (10)0.0062 (9)0.0090 (9)0.0033 (10)
C60.0184 (10)0.0304 (14)0.0152 (10)0.0028 (9)0.0078 (9)−0.0042 (9)
C70.0154 (9)0.0196 (12)0.0200 (11)0.0023 (8)0.0101 (8)−0.0039 (9)
C80.0147 (9)0.0235 (13)0.0285 (12)−0.0012 (8)0.0104 (9)−0.0049 (10)
C90.0230 (11)0.0205 (13)0.0401 (15)−0.0037 (9)0.0206 (11)−0.0027 (11)
C100.0255 (11)0.0250 (13)0.0280 (12)−0.0015 (10)0.0166 (10)0.0028 (10)
C110.0165 (9)0.0186 (12)0.0177 (10)0.0012 (8)0.0103 (8)−0.0010 (9)
C120.0172 (9)0.0160 (11)0.0164 (10)0.0021 (8)0.0102 (8)−0.0007 (8)
C130.0205 (10)0.0239 (13)0.0157 (10)−0.0008 (9)0.0122 (9)0.0015 (9)
S10.0235 (3)0.0213 (3)0.0248 (3)0.0033 (2)0.0151 (2)−0.0009 (2)
N1—C11.328 (3)C5—C61.344 (4)
N1—C121.364 (3)C5—H5A0.9300
N2—C101.326 (3)C6—C71.433 (3)
N2—C111.352 (3)C6—H6A0.9300
N3—C131.315 (3)C7—C81.408 (3)
N3—H3C0.81 (3)C7—C111.420 (3)
N3—H3B0.81 (3)C8—C91.364 (4)
C1—C21.398 (3)C8—H8A0.9300
C1—H1A0.9300C9—C101.411 (3)
C2—C31.377 (3)C9—H9A0.9300
C2—H2A0.9300C10—H10A0.9300
C3—C41.407 (3)C11—C121.456 (3)
C3—H3A0.9300C13—C13i1.535 (5)
C4—C121.412 (3)C13—S11.676 (2)
C4—C51.438 (3)
C1—N1—C12117.8 (2)C7—C6—H6A119.3
C10—N2—C11117.2 (2)C8—C7—C11117.5 (2)
C13—N3—H3C123 (2)C8—C7—C6122.4 (2)
C13—N3—H3B117 (2)C11—C7—C6120.1 (2)
H3C—N3—H3B120 (3)C9—C8—C7119.7 (2)
N1—C1—C2124.2 (2)C9—C8—H8A120.1
N1—C1—H1A117.9C7—C8—H8A120.1
C2—C1—H1A117.9C8—C9—C10118.2 (2)
C3—C2—C1118.3 (2)C8—C9—H9A120.9
C3—C2—H2A120.8C10—C9—H9A120.9
C1—C2—H2A120.8N2—C10—C9124.5 (2)
C2—C3—C4119.6 (2)N2—C10—H10A117.8
C2—C3—H3A120.2C9—C10—H10A117.8
C4—C3—H3A120.2N2—C11—C7122.9 (2)
C3—C4—C12118.0 (2)N2—C11—C12118.79 (19)
C3—C4—C5122.0 (2)C7—C11—C12118.3 (2)
C12—C4—C5120.0 (2)N1—C12—C4122.1 (2)
C6—C5—C4120.7 (2)N1—C12—C11118.4 (2)
C6—C5—H5A119.7C4—C12—C11119.46 (19)
C4—C5—H5A119.7N3—C13—C13i114.4 (3)
C5—C6—C7121.4 (2)N3—C13—S1124.50 (19)
C5—C6—H6A119.3C13i—C13—S1121.1 (2)
C12—N1—C1—C2−0.2 (3)C10—N2—C11—C12178.7 (2)
N1—C1—C2—C30.2 (4)C8—C7—C11—N20.9 (3)
C1—C2—C3—C4−0.7 (4)C6—C7—C11—N2−179.0 (2)
C2—C3—C4—C121.3 (4)C8—C7—C11—C12−178.2 (2)
C2—C3—C4—C5−178.6 (2)C6—C7—C11—C121.9 (3)
C3—C4—C5—C6−178.7 (2)C1—N1—C12—C40.8 (3)
C12—C4—C5—C61.4 (4)C1—N1—C12—C11−178.8 (2)
C4—C5—C6—C70.8 (4)C3—C4—C12—N1−1.3 (3)
C5—C6—C7—C8177.7 (2)C5—C4—C12—N1178.6 (2)
C5—C6—C7—C11−2.4 (3)C3—C4—C12—C11178.2 (2)
C11—C7—C8—C9−1.3 (3)C5—C4—C12—C11−1.8 (3)
C6—C7—C8—C9178.6 (2)N2—C11—C12—N10.7 (3)
C7—C8—C9—C101.2 (4)C7—C11—C12—N1179.81 (19)
C11—N2—C10—C90.3 (4)N2—C11—C12—C4−178.9 (2)
C8—C9—C10—N2−0.7 (4)C7—C11—C12—C40.2 (3)
C10—N2—C11—C7−0.4 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3C···N1ii0.81 (3)2.08 (3)2.876 (3)167 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3C⋯N1i0.81 (3)2.08 (3)2.876 (3)167 (4)

Symmetry code: (i) .

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