| Literature DB >> 21579413 |
Hoong-Kun Fun, Wan-Sin Loh, Annada C Maity, Shyamaprosad Goswami.
Abstract
The asymmetric unit of the title compound, C(12)H(8)N(2)·0.5C(2)H(4)N(2)S(2), contains one 1,10-phenanthroline mol-ecule and a half-mol-ecule of dithio-oxamide, which lies across a crystallographic inversion center. The 1,10-phenanthroline unit is not strictly planar, with dihedral angles between the central benzene ring and the pyridine rings of 1.42 (10) and 1.40 (10)°. In the crystal structure, two 1,10-phenanthroline mol-ecules are linked together by one dithio-oxamide via inter-molecular N-H⋯N hydrogen bonds.Entities:
Year: 2010 PMID: 21579413 PMCID: PMC2979584 DOI: 10.1107/S1600536810016405
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H8N2·0.5C2H4N2S2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5115 reflections |
| θ = 2.5–30.1° | |
| µ = 0.26 mm−1 | |
| β = 130.145 (2)° | Block, orange |
| 0.28 × 0.26 × 0.10 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 3374 independent reflections |
| Radiation source: fine-focus sealed tube | 2307 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.3°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 22512 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3374 reflections | (Δ/σ)max < 0.001 |
| 162 parameters | Δρmax = 1.24 e Å−3 |
| 0 restraints | Δρmin = −0.40 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.3548 (2) | 0.2611 (2) | 0.34019 (17) | 0.0185 (4) | |
| N2 | 0.5551 (2) | 0.4592 (2) | 0.36522 (18) | 0.0217 (4) | |
| N3 | 0.8022 (2) | 0.9404 (2) | 0.36819 (19) | 0.0201 (4) | |
| C1 | 0.2582 (3) | 0.1675 (2) | 0.3304 (2) | 0.0217 (5) | |
| H1A | 0.1591 | 0.1482 | 0.2512 | 0.026* | |
| C2 | 0.2959 (3) | 0.0962 (2) | 0.4317 (2) | 0.0234 (5) | |
| H2A | 0.2241 | 0.0313 | 0.4198 | 0.028* | |
| C3 | 0.4421 (3) | 0.1243 (3) | 0.5494 (2) | 0.0247 (5) | |
| H3A | 0.4698 | 0.0791 | 0.6186 | 0.030* | |
| C4 | 0.5493 (3) | 0.2219 (2) | 0.5643 (2) | 0.0193 (5) | |
| C5 | 0.7051 (3) | 0.2534 (3) | 0.6845 (2) | 0.0240 (5) | |
| H5A | 0.7382 | 0.2072 | 0.7549 | 0.029* | |
| C6 | 0.8035 (3) | 0.3489 (3) | 0.6961 (2) | 0.0236 (5) | |
| H6A | 0.9044 | 0.3670 | 0.7746 | 0.028* | |
| C7 | 0.7561 (3) | 0.4235 (2) | 0.5902 (2) | 0.0193 (5) | |
| C8 | 0.8544 (3) | 0.5272 (3) | 0.6009 (2) | 0.0248 (5) | |
| H8A | 0.9528 | 0.5508 | 0.6790 | 0.030* | |
| C9 | 0.8045 (3) | 0.5928 (3) | 0.4964 (3) | 0.0277 (6) | |
| H9A | 0.8688 | 0.6604 | 0.5015 | 0.033* | |
| C10 | 0.6528 (3) | 0.5553 (3) | 0.3803 (2) | 0.0267 (5) | |
| H10A | 0.6190 | 0.6011 | 0.3095 | 0.032* | |
| C11 | 0.6054 (3) | 0.3938 (2) | 0.4689 (2) | 0.0182 (5) | |
| C12 | 0.4998 (3) | 0.2896 (2) | 0.4565 (2) | 0.0170 (4) | |
| C13 | 0.9644 (3) | 0.9392 (2) | 0.4567 (2) | 0.0196 (5) | |
| S1 | 1.08871 (7) | 0.81821 (6) | 0.47638 (6) | 0.02354 (18) | |
| H3C | 0.752 (4) | 0.884 (3) | 0.314 (3) | 0.030 (8)* | |
| H3B | 0.754 (4) | 1.004 (3) | 0.366 (3) | 0.032 (8)* |
| N1 | 0.0163 (8) | 0.0198 (10) | 0.0163 (9) | −0.0001 (7) | 0.0091 (7) | −0.0012 (7) |
| N2 | 0.0213 (9) | 0.0205 (10) | 0.0208 (9) | −0.0015 (8) | 0.0125 (8) | 0.0007 (8) |
| N3 | 0.0170 (9) | 0.0203 (11) | 0.0173 (9) | −0.0006 (8) | 0.0085 (8) | −0.0037 (8) |
| C1 | 0.0182 (9) | 0.0207 (12) | 0.0216 (11) | −0.0002 (9) | 0.0108 (9) | −0.0009 (9) |
| C2 | 0.0224 (10) | 0.0200 (12) | 0.0290 (12) | −0.0002 (9) | 0.0171 (10) | 0.0038 (10) |
| C3 | 0.0234 (11) | 0.0260 (13) | 0.0237 (12) | 0.0047 (9) | 0.0148 (10) | 0.0081 (10) |
| C4 | 0.0183 (9) | 0.0211 (12) | 0.0172 (10) | 0.0025 (8) | 0.0108 (8) | 0.0014 (9) |
| C5 | 0.0203 (10) | 0.0314 (14) | 0.0149 (10) | 0.0062 (9) | 0.0090 (9) | 0.0033 (10) |
| C6 | 0.0184 (10) | 0.0304 (14) | 0.0152 (10) | 0.0028 (9) | 0.0078 (9) | −0.0042 (9) |
| C7 | 0.0154 (9) | 0.0196 (12) | 0.0200 (11) | 0.0023 (8) | 0.0101 (8) | −0.0039 (9) |
| C8 | 0.0147 (9) | 0.0235 (13) | 0.0285 (12) | −0.0012 (8) | 0.0104 (9) | −0.0049 (10) |
| C9 | 0.0230 (11) | 0.0205 (13) | 0.0401 (15) | −0.0037 (9) | 0.0206 (11) | −0.0027 (11) |
| C10 | 0.0255 (11) | 0.0250 (13) | 0.0280 (12) | −0.0015 (10) | 0.0166 (10) | 0.0028 (10) |
| C11 | 0.0165 (9) | 0.0186 (12) | 0.0177 (10) | 0.0012 (8) | 0.0103 (8) | −0.0010 (9) |
| C12 | 0.0172 (9) | 0.0160 (11) | 0.0164 (10) | 0.0021 (8) | 0.0102 (8) | −0.0007 (8) |
| C13 | 0.0205 (10) | 0.0239 (13) | 0.0157 (10) | −0.0008 (9) | 0.0122 (9) | 0.0015 (9) |
| S1 | 0.0235 (3) | 0.0213 (3) | 0.0248 (3) | 0.0033 (2) | 0.0151 (2) | −0.0009 (2) |
| N1—C1 | 1.328 (3) | C5—C6 | 1.344 (4) |
| N1—C12 | 1.364 (3) | C5—H5A | 0.9300 |
| N2—C10 | 1.326 (3) | C6—C7 | 1.433 (3) |
| N2—C11 | 1.352 (3) | C6—H6A | 0.9300 |
| N3—C13 | 1.315 (3) | C7—C8 | 1.408 (3) |
| N3—H3C | 0.81 (3) | C7—C11 | 1.420 (3) |
| N3—H3B | 0.81 (3) | C8—C9 | 1.364 (4) |
| C1—C2 | 1.398 (3) | C8—H8A | 0.9300 |
| C1—H1A | 0.9300 | C9—C10 | 1.411 (3) |
| C2—C3 | 1.377 (3) | C9—H9A | 0.9300 |
| C2—H2A | 0.9300 | C10—H10A | 0.9300 |
| C3—C4 | 1.407 (3) | C11—C12 | 1.456 (3) |
| C3—H3A | 0.9300 | C13—C13i | 1.535 (5) |
| C4—C12 | 1.412 (3) | C13—S1 | 1.676 (2) |
| C4—C5 | 1.438 (3) | ||
| C1—N1—C12 | 117.8 (2) | C7—C6—H6A | 119.3 |
| C10—N2—C11 | 117.2 (2) | C8—C7—C11 | 117.5 (2) |
| C13—N3—H3C | 123 (2) | C8—C7—C6 | 122.4 (2) |
| C13—N3—H3B | 117 (2) | C11—C7—C6 | 120.1 (2) |
| H3C—N3—H3B | 120 (3) | C9—C8—C7 | 119.7 (2) |
| N1—C1—C2 | 124.2 (2) | C9—C8—H8A | 120.1 |
| N1—C1—H1A | 117.9 | C7—C8—H8A | 120.1 |
| C2—C1—H1A | 117.9 | C8—C9—C10 | 118.2 (2) |
| C3—C2—C1 | 118.3 (2) | C8—C9—H9A | 120.9 |
| C3—C2—H2A | 120.8 | C10—C9—H9A | 120.9 |
| C1—C2—H2A | 120.8 | N2—C10—C9 | 124.5 (2) |
| C2—C3—C4 | 119.6 (2) | N2—C10—H10A | 117.8 |
| C2—C3—H3A | 120.2 | C9—C10—H10A | 117.8 |
| C4—C3—H3A | 120.2 | N2—C11—C7 | 122.9 (2) |
| C3—C4—C12 | 118.0 (2) | N2—C11—C12 | 118.79 (19) |
| C3—C4—C5 | 122.0 (2) | C7—C11—C12 | 118.3 (2) |
| C12—C4—C5 | 120.0 (2) | N1—C12—C4 | 122.1 (2) |
| C6—C5—C4 | 120.7 (2) | N1—C12—C11 | 118.4 (2) |
| C6—C5—H5A | 119.7 | C4—C12—C11 | 119.46 (19) |
| C4—C5—H5A | 119.7 | N3—C13—C13i | 114.4 (3) |
| C5—C6—C7 | 121.4 (2) | N3—C13—S1 | 124.50 (19) |
| C5—C6—H6A | 119.3 | C13i—C13—S1 | 121.1 (2) |
| C12—N1—C1—C2 | −0.2 (3) | C10—N2—C11—C12 | 178.7 (2) |
| N1—C1—C2—C3 | 0.2 (4) | C8—C7—C11—N2 | 0.9 (3) |
| C1—C2—C3—C4 | −0.7 (4) | C6—C7—C11—N2 | −179.0 (2) |
| C2—C3—C4—C12 | 1.3 (4) | C8—C7—C11—C12 | −178.2 (2) |
| C2—C3—C4—C5 | −178.6 (2) | C6—C7—C11—C12 | 1.9 (3) |
| C3—C4—C5—C6 | −178.7 (2) | C1—N1—C12—C4 | 0.8 (3) |
| C12—C4—C5—C6 | 1.4 (4) | C1—N1—C12—C11 | −178.8 (2) |
| C4—C5—C6—C7 | 0.8 (4) | C3—C4—C12—N1 | −1.3 (3) |
| C5—C6—C7—C8 | 177.7 (2) | C5—C4—C12—N1 | 178.6 (2) |
| C5—C6—C7—C11 | −2.4 (3) | C3—C4—C12—C11 | 178.2 (2) |
| C11—C7—C8—C9 | −1.3 (3) | C5—C4—C12—C11 | −1.8 (3) |
| C6—C7—C8—C9 | 178.6 (2) | N2—C11—C12—N1 | 0.7 (3) |
| C7—C8—C9—C10 | 1.2 (4) | C7—C11—C12—N1 | 179.81 (19) |
| C11—N2—C10—C9 | 0.3 (4) | N2—C11—C12—C4 | −178.9 (2) |
| C8—C9—C10—N2 | −0.7 (4) | C7—C11—C12—C4 | 0.2 (3) |
| C10—N2—C11—C7 | −0.4 (3) |
| H··· | ||||
| N3—H3C···N1ii | 0.81 (3) | 2.08 (3) | 2.876 (3) | 167 (4) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.81 (3) | 2.08 (3) | 2.876 (3) | 167 (4) |
Symmetry code: (i) .