Literature DB >> 21579402

1-[2,4,6-Trimethyl-3,5-bis-(4-oxopiperidin-1-ylmeth-yl)benz-yl]piperidin-4-one.

K Rajesh, V Vijayakumar, S Sarveswari, T Narasimhamurthy, Edward R T Tiekink.   

Abstract

In the structure of the title compound, C(27)H(39)N(3)O(3), each of the (4-oxopiperidin-1-yl)methyl residues adopts a flattened chair conformation (with the N and carbonyl groups being oriented to either side of the central C(4) plane) and they occupy positions approximately orthogonal to the central benzene ring [C(benzene)-C-C(methyl-ene)-N torsion angles 103.4 (2), -104.4 (3) and 71.9 (3)°]; further, two of these residues are oriented to one side of the central benzene ring with the third to the other side. In the crystal packing, supra-molecular layers in the ab plane are sustained by C-H⋯O inter-actions.

Entities:  

Year:  2010        PMID: 21579402      PMCID: PMC2979355          DOI: 10.1107/S1600536810016570

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological significance of piperidin-4-one and analogous pyran and thio­pyran species, see: El-Subbagh et al. (2000 ▶); Ganellin et al. (1965 ▶); Hagenbach & Gysin (1952 ▶); Ileana et al. (1985 ▶); Mokio et al. (1989 ▶); Pathak et al. (2007 ▶). For a related structure, see: Vijayakumar et al. (2010 ▶).

Experimental

Crystal data

C27H39N3O3 M = 453.61 Triclinic, a = 7.9315 (16) Å b = 12.449 (3) Å c = 14.618 (3) Å α = 67.641 (3)° β = 87.749 (4)° γ = 73.630 (3)° V = 1277.0 (5) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.28 × 0.21 × 0.17 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1998 ▶) T min = 0.981, T max = 0.987 12284 measured reflections 4490 independent reflections 3008 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.183 S = 1.02 4490 reflections 301 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.14 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810016570/hg2682sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810016570/hg2682Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H39N3O3Z = 2
Mr = 453.61F(000) = 492
Triclinic, P1Dx = 1.180 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.9315 (16) ÅCell parameters from 969 reflections
b = 12.449 (3) Åθ = 2.9–21.9°
c = 14.618 (3) ŵ = 0.08 mm1
α = 67.641 (3)°T = 293 K
β = 87.749 (4)°Block, colourless
γ = 73.630 (3)°0.28 × 0.21 × 0.17 mm
V = 1277.0 (5) Å3
Bruker SMART APEX CCD diffractometer4490 independent reflections
Radiation source: fine-focus sealed tube3008 reflections with I > 2σ(I)
graphiteRint = 0.026
ω scansθmax = 25.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1998)h = −9→9
Tmin = 0.981, Tmax = 0.987k = −14→14
12284 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.183H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0929P)2 + 0.3308P] where P = (Fo2 + 2Fc2)/3
4490 reflections(Δ/σ)max = 0.007
301 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.1090 (3)−0.3541 (2)0.4155 (2)0.1134 (9)
O2−0.5097 (3)0.4895 (2)0.2615 (2)0.1089 (8)
O31.1430 (3)0.1907 (3)−0.0499 (2)0.1334 (11)
N10.2978 (2)−0.20717 (17)0.36948 (14)0.0539 (5)
N20.0198 (2)0.35113 (19)0.26602 (16)0.0603 (6)
N30.6691 (2)0.18892 (18)0.05220 (14)0.0558 (5)
C10.4104 (3)−0.0297 (2)0.33087 (17)0.0502 (6)
C20.3290 (3)0.0681 (2)0.35901 (17)0.0511 (6)
C30.3003 (3)0.1875 (2)0.29004 (19)0.0532 (6)
C40.3618 (3)0.2095 (2)0.19514 (18)0.0545 (6)
C50.4516 (3)0.1122 (2)0.16894 (17)0.0520 (6)
C60.4721 (3)−0.0076 (2)0.23580 (18)0.0511 (6)
C70.4264 (3)−0.1596 (2)0.39930 (19)0.0592 (7)
H7A0.5444−0.21010.39910.071*
H7B0.4088−0.16360.46640.071*
C80.3258 (3)−0.3350 (2)0.4315 (2)0.0705 (8)
H8A0.3095−0.34390.49990.085*
H8B0.4462−0.37990.42840.085*
C90.1999 (4)−0.3884 (3)0.3990 (3)0.0792 (9)
H9A0.2340−0.39630.33690.095*
H9B0.2100−0.46890.44830.095*
C100.0127 (4)−0.3128 (3)0.3857 (2)0.0704 (8)
C11−0.0149 (3)−0.1805 (2)0.3333 (2)0.0684 (7)
H11A−0.1333−0.13730.34150.082*
H11B−0.0036−0.16160.26300.082*
C120.1175 (3)−0.1385 (2)0.37301 (19)0.0580 (6)
H12A0.1019−0.05310.33400.070*
H12B0.0960−0.14790.44100.070*
C130.2677 (3)0.0440 (3)0.46323 (19)0.0677 (7)
H13A0.14980.03750.46430.102*
H13B0.26980.10970.48190.102*
H13C0.3448−0.03030.50910.102*
C140.2003 (3)0.2953 (2)0.3141 (2)0.0655 (7)
H14A0.19460.26930.38540.079*
H14B0.26410.35560.29290.079*
C15−0.0916 (3)0.2725 (2)0.3062 (2)0.0587 (6)
H15A−0.10120.25730.37610.070*
H15B−0.03730.19530.30040.070*
C16−0.2748 (3)0.3271 (3)0.2531 (2)0.0770 (8)
H16A−0.26750.32750.18660.092*
H16B−0.34910.27670.28810.092*
C17−0.3573 (4)0.4534 (3)0.2471 (2)0.0750 (8)
C18−0.2391 (4)0.5317 (3)0.2223 (3)0.1045 (12)
H18A−0.29270.60240.23800.125*
H18B−0.22490.55970.15160.125*
C19−0.0583 (4)0.4656 (3)0.2789 (3)0.0860 (10)
H19A0.01890.51700.25510.103*
H19B−0.06980.44930.34880.103*
C200.3263 (3)0.3379 (3)0.1196 (2)0.0757 (8)
H20A0.42420.34420.07920.114*
H20B0.31070.39260.15320.114*
H20C0.22140.35860.07840.114*
C210.5171 (3)0.1390 (3)0.06593 (18)0.0628 (7)
H21A0.55070.06480.05360.075*
H21B0.42150.19660.01740.075*
C220.6971 (4)0.2351 (3)−0.0532 (2)0.0842 (10)
H22A0.58870.2925−0.09050.101*
H22B0.72950.1686−0.07580.101*
C230.8419 (4)0.2969 (4)−0.0716 (3)0.1011 (12)
H23A0.86200.3253−0.14160.121*
H23B0.80640.3665−0.05300.121*
C241.0056 (4)0.2109 (3)−0.0130 (2)0.0797 (9)
C250.9854 (3)0.1473 (3)0.0935 (2)0.0755 (8)
H25A0.96980.20310.12690.091*
H25B1.09130.08110.12350.091*
C260.8270 (3)0.0975 (2)0.1068 (2)0.0644 (7)
H26A0.85270.03090.08450.077*
H26B0.80710.06590.17670.077*
C270.5526 (3)−0.1134 (3)0.2056 (2)0.0691 (8)
H27A0.4736−0.11280.15720.104*
H27B0.5726−0.18790.26280.104*
H27C0.6625−0.10670.17770.104*
U11U22U33U12U13U23
O10.0747 (14)0.0842 (16)0.159 (2)−0.0394 (13)0.0274 (15)−0.0133 (15)
O20.0508 (12)0.1078 (18)0.160 (2)−0.0044 (12)0.0228 (13)−0.0575 (16)
O30.0656 (14)0.245 (3)0.131 (2)−0.0694 (18)0.0524 (14)−0.105 (2)
N10.0428 (10)0.0519 (12)0.0582 (12)−0.0119 (9)0.0099 (9)−0.0137 (10)
N20.0401 (10)0.0613 (13)0.0751 (14)−0.0127 (9)0.0124 (9)−0.0238 (11)
N30.0351 (10)0.0699 (13)0.0532 (12)−0.0180 (9)0.0068 (8)−0.0122 (10)
C10.0308 (11)0.0641 (15)0.0553 (14)−0.0161 (10)0.0028 (10)−0.0210 (12)
C20.0303 (11)0.0717 (17)0.0548 (14)−0.0155 (11)0.0042 (10)−0.0276 (13)
C30.0307 (11)0.0663 (16)0.0676 (16)−0.0172 (11)0.0049 (10)−0.0288 (13)
C40.0301 (11)0.0641 (16)0.0664 (16)−0.0170 (11)0.0025 (10)−0.0193 (13)
C50.0289 (11)0.0755 (17)0.0561 (14)−0.0225 (11)0.0062 (10)−0.0251 (13)
C60.0305 (11)0.0688 (16)0.0632 (15)−0.0209 (11)0.0105 (10)−0.0312 (13)
C70.0401 (12)0.0672 (17)0.0615 (15)−0.0099 (11)0.0024 (11)−0.0191 (13)
C80.0538 (15)0.0587 (17)0.0804 (19)−0.0076 (13)0.0117 (13)−0.0137 (14)
C90.078 (2)0.0552 (17)0.100 (2)−0.0240 (15)0.0208 (17)−0.0225 (16)
C100.0621 (17)0.0688 (18)0.0790 (19)−0.0278 (14)0.0131 (14)−0.0213 (15)
C110.0518 (15)0.0663 (17)0.0783 (18)−0.0207 (13)0.0024 (13)−0.0157 (14)
C120.0443 (13)0.0559 (15)0.0659 (16)−0.0132 (11)0.0056 (11)−0.0161 (12)
C130.0547 (15)0.0854 (19)0.0636 (17)−0.0163 (14)0.0091 (12)−0.0327 (15)
C140.0443 (14)0.0750 (18)0.0871 (19)−0.0201 (13)0.0092 (13)−0.0403 (15)
C150.0414 (13)0.0625 (16)0.0712 (16)−0.0131 (11)0.0062 (11)−0.0262 (13)
C160.0466 (15)0.087 (2)0.098 (2)−0.0117 (14)0.0010 (14)−0.0419 (18)
C170.0468 (15)0.080 (2)0.085 (2)−0.0035 (14)0.0067 (13)−0.0281 (16)
C180.0654 (19)0.064 (2)0.153 (3)−0.0025 (16)0.018 (2)−0.022 (2)
C190.0603 (17)0.0647 (19)0.136 (3)−0.0224 (15)0.0241 (18)−0.0402 (19)
C200.0501 (15)0.0744 (19)0.086 (2)−0.0166 (13)0.0093 (14)−0.0149 (16)
C210.0425 (13)0.0917 (19)0.0569 (15)−0.0282 (13)0.0075 (11)−0.0257 (14)
C220.0580 (16)0.116 (3)0.0561 (17)−0.0340 (17)0.0056 (13)−0.0031 (16)
C230.079 (2)0.122 (3)0.086 (2)−0.052 (2)0.0246 (18)−0.008 (2)
C240.0575 (17)0.123 (3)0.092 (2)−0.0536 (18)0.0352 (16)−0.060 (2)
C250.0408 (14)0.105 (2)0.084 (2)−0.0235 (14)0.0092 (13)−0.0388 (18)
C260.0408 (13)0.0757 (18)0.0666 (16)−0.0169 (12)0.0054 (11)−0.0166 (14)
C270.0569 (15)0.0853 (19)0.0825 (19)−0.0324 (14)0.0234 (14)−0.0440 (16)
O1—C101.209 (3)C13—H13A0.9600
O2—C171.205 (3)C13—H13B0.9600
O3—C241.202 (3)C13—H13C0.9600
N1—C121.455 (3)C14—H14A0.9700
N1—C81.457 (3)C14—H14B0.9700
N1—C71.468 (3)C15—C161.518 (3)
N2—C151.447 (3)C15—H15A0.9700
N2—C191.465 (3)C15—H15B0.9700
N2—C141.474 (3)C16—C171.493 (4)
N3—C261.444 (3)C16—H16A0.9700
N3—C221.457 (3)C16—H16B0.9700
N3—C211.480 (3)C17—C181.477 (4)
C1—C61.407 (3)C18—C191.526 (4)
C1—C21.409 (3)C18—H18A0.9700
C1—C71.515 (3)C18—H18B0.9700
C2—C31.402 (3)C19—H19A0.9700
C2—C131.524 (3)C19—H19B0.9700
C3—C41.404 (3)C20—H20A0.9600
C3—C141.513 (3)C20—H20B0.9600
C4—C51.402 (3)C20—H20C0.9600
C4—C201.511 (4)C21—H21A0.9700
C5—C61.405 (3)C21—H21B0.9700
C5—C211.517 (3)C22—C231.516 (4)
C6—C271.511 (3)C22—H22A0.9700
C7—H7A0.9700C22—H22B0.9700
C7—H7B0.9700C23—C241.474 (5)
C8—C91.522 (4)C23—H23A0.9700
C8—H8A0.9700C23—H23B0.9700
C8—H8B0.9700C24—C251.480 (4)
C9—C101.491 (4)C25—C261.525 (3)
C9—H9A0.9700C25—H25A0.9700
C9—H9B0.9700C25—H25B0.9700
C10—C111.482 (4)C26—H26A0.9700
C11—C121.517 (3)C26—H26B0.9700
C11—H11A0.9700C27—H27A0.9600
C11—H11B0.9700C27—H27B0.9600
C12—H12A0.9700C27—H27C0.9600
C12—H12B0.9700
C12—N1—C8109.97 (18)N2—C15—C16112.2 (2)
C12—N1—C7111.77 (19)N2—C15—H15A109.2
C8—N1—C7110.82 (19)C16—C15—H15A109.2
C15—N2—C19109.09 (19)N2—C15—H15B109.2
C15—N2—C14112.1 (2)C16—C15—H15B109.2
C19—N2—C14109.6 (2)H15A—C15—H15B107.9
C26—N3—C22109.5 (2)C17—C16—C15112.2 (2)
C26—N3—C21111.39 (19)C17—C16—H16A109.2
C22—N3—C21108.5 (2)C15—C16—H16A109.2
C6—C1—C2120.0 (2)C17—C16—H16B109.2
C6—C1—C7118.4 (2)C15—C16—H16B109.2
C2—C1—C7121.5 (2)H16A—C16—H16B107.9
C3—C2—C1119.8 (2)O2—C17—C18122.0 (3)
C3—C2—C13120.1 (2)O2—C17—C16122.6 (3)
C1—C2—C13120.0 (2)C18—C17—C16115.4 (2)
C2—C3—C4120.0 (2)C17—C18—C19112.1 (3)
C2—C3—C14121.7 (2)C17—C18—H18A109.2
C4—C3—C14118.3 (2)C19—C18—H18A109.2
C5—C4—C3120.2 (2)C17—C18—H18B109.2
C5—C4—C20119.6 (2)C19—C18—H18B109.2
C3—C4—C20120.2 (2)H18A—C18—H18B107.9
C4—C5—C6120.0 (2)N2—C19—C18111.2 (3)
C4—C5—C21118.9 (2)N2—C19—H19A109.4
C6—C5—C21121.0 (2)C18—C19—H19A109.4
C5—C6—C1119.8 (2)N2—C19—H19B109.4
C5—C6—C27120.9 (2)C18—C19—H19B109.4
C1—C6—C27119.2 (2)H19A—C19—H19B108.0
N1—C7—C1112.09 (18)C4—C20—H20A109.5
N1—C7—H7A109.2C4—C20—H20B109.5
C1—C7—H7A109.2H20A—C20—H20B109.5
N1—C7—H7B109.2C4—C20—H20C109.5
C1—C7—H7B109.2H20A—C20—H20C109.5
H7A—C7—H7B107.9H20B—C20—H20C109.5
N1—C8—C9112.0 (2)N3—C21—C5113.1 (2)
N1—C8—H8A109.2N3—C21—H21A108.9
C9—C8—H8A109.2C5—C21—H21A108.9
N1—C8—H8B109.2N3—C21—H21B108.9
C9—C8—H8B109.2C5—C21—H21B108.9
H8A—C8—H8B107.9H21A—C21—H21B107.8
C10—C9—C8112.8 (2)N3—C22—C23110.2 (3)
C10—C9—H9A109.0N3—C22—H22A109.6
C8—C9—H9A109.0C23—C22—H22A109.6
C10—C9—H9B109.0N3—C22—H22B109.6
C8—C9—H9B109.0C23—C22—H22B109.6
H9A—C9—H9B107.8H22A—C22—H22B108.1
O1—C10—C11121.5 (3)C24—C23—C22109.8 (3)
O1—C10—C9123.7 (3)C24—C23—H23A109.7
C11—C10—C9114.8 (2)C22—C23—H23A109.7
C10—C11—C12111.3 (2)C24—C23—H23B109.7
C10—C11—H11A109.4C22—C23—H23B109.7
C12—C11—H11A109.4H23A—C23—H23B108.2
C10—C11—H11B109.4O3—C24—C23122.3 (3)
C12—C11—H11B109.4O3—C24—C25122.9 (3)
H11A—C11—H11B108.0C23—C24—C25114.8 (2)
N1—C12—C11111.6 (2)C24—C25—C26110.8 (2)
N1—C12—H12A109.3C24—C25—H25A109.5
C11—C12—H12A109.3C26—C25—H25A109.5
N1—C12—H12B109.3C24—C25—H25B109.5
C11—C12—H12B109.3C26—C25—H25B109.5
H12A—C12—H12B108.0H25A—C25—H25B108.1
C2—C13—H13A109.5N3—C26—C25112.1 (2)
C2—C13—H13B109.5N3—C26—H26A109.2
H13A—C13—H13B109.5C25—C26—H26A109.2
C2—C13—H13C109.5N3—C26—H26B109.2
H13A—C13—H13C109.5C25—C26—H26B109.2
H13B—C13—H13C109.5H26A—C26—H26B107.9
N2—C14—C3112.7 (2)C6—C27—H27A109.5
N2—C14—H14A109.1C6—C27—H27B109.5
C3—C14—H14A109.1H27A—C27—H27B109.5
N2—C14—H14B109.1C6—C27—H27C109.5
C3—C14—H14B109.1H27A—C27—H27C109.5
H14A—C14—H14B107.8H27B—C27—H27C109.5
C6—C1—C2—C33.8 (3)O1—C10—C11—C12133.7 (3)
C7—C1—C2—C3−173.44 (19)C9—C10—C11—C12−45.6 (4)
C6—C1—C2—C13−177.93 (19)C8—N1—C12—C11−61.6 (3)
C7—C1—C2—C134.8 (3)C7—N1—C12—C11174.8 (2)
C1—C2—C3—C4−3.7 (3)C10—C11—C12—N154.7 (3)
C13—C2—C3—C4178.0 (2)C15—N2—C14—C368.0 (3)
C1—C2—C3—C14174.9 (2)C19—N2—C14—C3−170.7 (2)
C13—C2—C3—C14−3.3 (3)C2—C3—C14—N2−104.4 (3)
C2—C3—C4—C50.1 (3)C4—C3—C14—N274.3 (3)
C14—C3—C4—C5−178.57 (19)C19—N2—C15—C1661.4 (3)
C2—C3—C4—C20178.1 (2)C14—N2—C15—C16−177.0 (2)
C14—C3—C4—C20−0.6 (3)N2—C15—C16—C17−51.2 (3)
C3—C4—C5—C63.4 (3)C15—C16—C17—O2−137.8 (3)
C20—C4—C5—C6−174.6 (2)C15—C16—C17—C1842.1 (4)
C3—C4—C5—C21−179.76 (19)O2—C17—C18—C19136.7 (3)
C20—C4—C5—C212.2 (3)C16—C17—C18—C19−43.1 (4)
C4—C5—C6—C1−3.3 (3)C15—N2—C19—C18−61.9 (3)
C21—C5—C6—C1179.92 (19)C14—N2—C19—C18175.0 (2)
C4—C5—C6—C27174.0 (2)C17—C18—C19—N252.8 (4)
C21—C5—C6—C27−2.8 (3)C26—N3—C21—C571.4 (3)
C2—C1—C6—C5−0.3 (3)C22—N3—C21—C5−168.0 (2)
C7—C1—C6—C5177.04 (19)C4—C5—C21—N371.9 (3)
C2—C1—C6—C27−177.6 (2)C6—C5—C21—N3−111.3 (2)
C7—C1—C6—C27−0.3 (3)C26—N3—C22—C23−63.1 (3)
C12—N1—C7—C1−61.7 (3)C21—N3—C22—C23175.1 (3)
C8—N1—C7—C1175.3 (2)N3—C22—C23—C2457.7 (4)
C6—C1—C7—N1−73.9 (2)C22—C23—C24—O3126.4 (3)
C2—C1—C7—N1103.4 (2)C22—C23—C24—C25−50.7 (4)
C12—N1—C8—C958.7 (3)O3—C24—C25—C26−129.9 (3)
C7—N1—C8—C9−177.2 (2)C23—C24—C25—C2647.2 (4)
N1—C8—C9—C10−49.5 (3)C22—N3—C26—C2560.0 (3)
C8—C9—C10—O1−135.9 (3)C21—N3—C26—C25180.0 (2)
C8—C9—C10—C1143.5 (4)C24—C25—C26—N3−51.3 (3)
D—H···AD—HH···AD···AD—H···A
C20—H20a···N30.962.463.184 (4)132
C9—H9a···O2i0.972.603.412 (5)142
C21—H21b···O3ii0.972.483.252 (4)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C20—H20a⋯N30.962.463.184 (4)132
C9—H9a⋯O2i0.972.603.412 (5)142
C21—H21b⋯O3ii0.972.483.252 (4)136

Symmetry codes: (i) ; (ii) .

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