Literature DB >> 21579401

Spiro-[1,3-dioxolane-2,3'-indolin]-2'-one.

Yan Meng, Yanqing Miao.   

Abstract

The title compound, C(10)H(9)NO(3), was synthesized by the condensation reaction of isatin (systematic name 1H-indole-2,3-dione) with glycol in presence of p-toluene-sulfonic acid. The indol-2-one ring system is essentially planar [N-C-C-C torsion angle = 3.1 (2)°], and the 1,3-dioxolane ring is slightly distorted. The crystal structure exhibits inter-molecular N-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21579401      PMCID: PMC2979575          DOI: 10.1107/S1600536810016132

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Santos et al. (2008 ▶). For the bioactivity of the title compound, see: Demosthenes et al. (1998 ▶); Rajopadhye & Popp (1988 ▶).

Experimental

Crystal data

C10H9NO3 M = 191.18 Monoclinic, a = 7.484 (2) Å b = 5.650 (1) Å c = 20.942 (5) Å β = 97.889 (8)° V = 877.1 (4) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 273 K 0.36 × 0.27 × 0.21 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.963, T max = 0.989 4056 measured reflections 1534 independent reflections 1093 reflections with I > 2σ(I) R int = 0.070

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.137 S = 1.09 1534 reflections 131 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT-Plus (Bruker, 2002 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810016132/lx2143sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810016132/lx2143Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9NO3F(000) = 400
Mr = 191.18Dx = 1.448 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7304 reflections
a = 7.484 (2) Åθ = 1.5–25.0°
b = 5.650 (1) ŵ = 0.11 mm1
c = 20.942 (5) ÅT = 273 K
β = 97.889 (8)°Block, colourless
V = 877.1 (4) Å30.36 × 0.27 × 0.21 mm
Z = 4
Bruker SMART CCD diffractometer1534 independent reflections
Radiation source: fine-focus sealed tube1093 reflections with I > 2σ(I)
graphiteRint = 0.070
phi and ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −8→8
Tmin = 0.963, Tmax = 0.989k = −6→6
4056 measured reflectionsl = −21→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: difference Fourier map
wR(F2) = 0.137H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0648P)2 + 0.151P] where P = (Fo2 + 2Fc2)/3
1534 reflections(Δ/σ)max < 0.001
131 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6983 (2)0.2241 (3)0.50491 (8)0.0600 (5)
O30.6788 (2)0.6884 (3)0.43906 (8)0.0551 (5)
O20.8104 (2)0.4151 (3)0.38133 (8)0.0560 (5)
N10.4575 (3)0.1613 (4)0.42609 (9)0.0469 (6)
H10.407 (4)0.044 (5)0.4439 (13)0.070 (9)*
C70.3813 (3)0.2722 (4)0.36864 (10)0.0400 (6)
C20.6494 (3)0.4723 (4)0.40675 (10)0.0417 (6)
C80.4869 (3)0.4639 (4)0.35588 (10)0.0402 (6)
C30.4343 (3)0.6053 (4)0.30311 (11)0.0506 (6)
H3A0.50320.73550.29450.061*
C60.2254 (3)0.2139 (4)0.32859 (11)0.0512 (6)
H6A0.15660.08340.33700.061*
C10.6076 (3)0.2731 (4)0.45352 (10)0.0447 (6)
C50.1752 (3)0.3571 (5)0.27544 (11)0.0550 (7)
H5A0.07070.32160.24770.066*
C40.2758 (3)0.5498 (5)0.26285 (11)0.0542 (7)
H4A0.23810.64430.22720.065*
C100.8530 (4)0.7641 (6)0.4348 (2)0.0911 (11)
H10A0.91640.79720.47740.109*
H10B0.85040.90750.40920.109*
C90.9435 (4)0.5760 (6)0.40444 (16)0.0809 (10)
H9B1.00190.63830.36940.097*
H9C1.03400.50110.43550.097*
U11U22U33U12U13U23
O10.0568 (12)0.0592 (12)0.0595 (10)−0.0091 (9)−0.0079 (9)0.0079 (8)
O30.0577 (11)0.0369 (9)0.0735 (11)−0.0087 (8)0.0196 (9)−0.0187 (8)
O20.0441 (10)0.0489 (10)0.0777 (11)−0.0054 (8)0.0176 (8)−0.0210 (8)
N10.0488 (13)0.0362 (11)0.0535 (11)−0.0084 (10)−0.0008 (9)0.0106 (9)
C70.0435 (14)0.0317 (12)0.0452 (12)0.0029 (10)0.0081 (10)0.0008 (9)
C20.0424 (13)0.0305 (12)0.0538 (12)−0.0037 (10)0.0127 (10)−0.0069 (10)
C80.0435 (13)0.0297 (12)0.0490 (12)0.0015 (10)0.0122 (10)−0.0006 (9)
C30.0542 (15)0.0397 (13)0.0605 (14)0.0000 (11)0.0174 (12)0.0095 (11)
C60.0495 (16)0.0433 (14)0.0596 (14)−0.0058 (11)0.0032 (11)0.0019 (11)
C10.0464 (14)0.0368 (13)0.0497 (12)0.0005 (11)0.0022 (11)−0.0019 (10)
C50.0483 (15)0.0612 (17)0.0540 (13)0.0034 (13)0.0014 (11)0.0042 (12)
C40.0558 (16)0.0569 (16)0.0505 (13)0.0139 (14)0.0095 (11)0.0114 (11)
C100.059 (2)0.0579 (19)0.160 (3)−0.0178 (16)0.028 (2)−0.043 (2)
C90.0602 (18)0.084 (2)0.102 (2)−0.0233 (17)0.0217 (16)−0.0377 (19)
O1—C11.223 (2)C3—C41.393 (3)
O3—C101.387 (4)C3—H3A0.9300
O3—C21.399 (3)C6—C51.386 (3)
O2—C91.386 (3)C6—H6A0.9300
O2—C21.420 (3)C5—C41.370 (3)
N1—C11.347 (3)C5—H5A0.9300
N1—C71.406 (3)C4—H4A0.9300
N1—H10.87 (3)C10—C91.452 (4)
C7—C61.380 (3)C10—H10A0.9700
C7—C81.388 (3)C10—H10B0.9700
C2—C81.503 (3)C9—H9B0.9700
C2—C11.552 (3)C9—H9C0.9700
C8—C31.377 (3)
C10—O3—C2108.95 (19)C5—C6—H6A121.2
C9—O2—C2109.03 (19)O1—C1—N1126.8 (2)
C1—N1—C7111.8 (2)O1—C1—C2125.8 (2)
C1—N1—H1124.0 (17)N1—C1—C2107.44 (18)
C7—N1—H1123.8 (17)C4—C5—C6121.5 (2)
C6—C7—C8121.7 (2)C4—C5—H5A119.2
C6—C7—N1128.6 (2)C6—C5—H5A119.2
C8—C7—N1109.75 (19)C5—C4—C3120.5 (2)
O3—C2—O2107.13 (17)C5—C4—H4A119.8
O3—C2—C8115.39 (18)C3—C4—H4A119.8
O2—C2—C8111.88 (17)O3—C10—C9107.6 (2)
O3—C2—C1111.09 (17)O3—C10—H10A110.2
O2—C2—C1109.05 (18)C9—C10—H10A110.2
C8—C2—C1102.17 (17)O3—C10—H10B110.2
C3—C8—C7120.0 (2)C9—C10—H10B110.2
C3—C8—C2131.7 (2)H10A—C10—H10B108.5
C7—C8—C2108.34 (17)O2—C9—C10106.1 (2)
C8—C3—C4118.7 (2)O2—C9—H9B110.5
C8—C3—H3A120.6C10—C9—H9B110.5
C4—C3—H3A120.6O2—C9—H9C110.5
C7—C6—C5117.6 (2)C10—C9—H9C110.5
C7—C6—H6A121.2H9B—C9—H9C108.7
C1—N1—C7—C6−177.7 (2)C7—C8—C3—C4−0.9 (3)
C1—N1—C7—C81.5 (3)C2—C8—C3—C4178.4 (2)
C10—O3—C2—O2−0.6 (3)C8—C7—C6—C5−1.3 (4)
C10—O3—C2—C8−125.9 (3)N1—C7—C6—C5177.8 (2)
C10—O3—C2—C1118.4 (3)C7—N1—C1—O1176.7 (2)
C9—O2—C2—O37.5 (3)C7—N1—C1—C2−5.3 (3)
C9—O2—C2—C8134.9 (2)O3—C2—C1—O1−51.7 (3)
C9—O2—C2—C1−112.8 (2)O2—C2—C1—O166.2 (3)
C6—C7—C8—C31.8 (3)C8—C2—C1—O1−175.3 (2)
N1—C7—C8—C3−177.5 (2)O3—C2—C1—N1130.3 (2)
C6—C7—C8—C2−177.7 (2)O2—C2—C1—N1−111.9 (2)
N1—C7—C8—C23.1 (2)C8—C2—C1—N16.7 (2)
O3—C2—C8—C354.2 (3)C7—C6—C5—C4−0.1 (4)
O2—C2—C8—C3−68.6 (3)C6—C5—C4—C30.9 (4)
C1—C2—C8—C3174.9 (2)C8—C3—C4—C5−0.4 (4)
O3—C2—C8—C7−126.4 (2)C2—O3—C10—C9−6.2 (4)
O2—C2—C8—C7110.7 (2)C2—O2—C9—C10−11.1 (4)
C1—C2—C8—C7−5.8 (2)O3—C10—C9—O210.7 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.87 (3)2.07 (3)2.941 (3)174 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.87 (3)2.07 (3)2.941 (3)174 (2)

Symmetry code: (i) .

  2 in total

1.  Potential anticonvulsants. 11. Synthesis and anticonvulsant activity of spiro[1,3-dioxolane-2,3'-indolin]-2'-ones and structural analogues.

Authors:  M Rajopadhye; F D Popp
Journal:  J Med Chem       Date:  1988-05       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.