Literature DB >> 21579339

Poly[bis-(1H-imidazole)bis-(μ(2)-1H-imidazolido)bis-(μ(2)-7-oxabicyclo-[2.2.1]heptane-2,3-dicarboxyl-ato)trizinc(II)].

Qiu-Yue Lin, Na Wang, Yi-Zhou Wu.   

Abstract

The title polymer, [Zn(3)(C(8)H(8)O(5))(2)(C(3)H(3)N(2))(2)(C(3)H(4)N(2))(2)](n), was formed by the reaction of zinc acetate with imidazole and 7-oxabicyclo-[2.2.1]heptane-2,3-dicarboxylic anhydride (norcan-tharidine). One of the two crystallographically unique Zn(II) atoms is four-coordinated by three N atoms of three imidazole ligands, two of which are deprotonated, and by one carboxyl-ate O atom of the demethyl-cantharate anion. The second Zn(II) atom is situated on an inversion centre and is six-coordinated by the bridging O atoms of two symmetry-related demethyl-cantharate anions and by four carboxyl-ate O atoms of the corresponding carboxyl-ate groups. The polymeric crystal structure is additionally stabilized by N-H⋯O hydrogen bonding between the imidazole ligands and carboxyl-ate O atoms.

Entities:  

Year:  2010        PMID: 21579339      PMCID: PMC2979651          DOI: 10.1107/S1600536810017915

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

7-Oxabicyclo­[2.2.1]heptane-2,3-dicarboxylic anhydride (nor­can­tharidin) is a lower toxicity anti­cancer drug, see: Shimi et al. (1982 ▶). For cobalt complexes of norcantharidin, see: Wang et al. (1988 ▶) and for those including imidazole ligands, see: Furenlid et al. (1986 ▶); Zhu et al. (2003 ▶).

Experimental

Crystal data

[Zn3(C8H8O5)2(C3H3N2)2(C3H4N2)2] M = 834.71 Monoclinic, a = 7.9993 (1) Å b = 22.3923 (2) Å c = 9.7586 (1) Å β = 112.633 (1)° V = 1613.37 (3) Å3 Z = 2 Mo Kα radiation μ = 2.28 mm−1 T = 296 K 0.28 × 0.17 × 0.09 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.629, T max = 0.822 13439 measured reflections 3714 independent reflections 3197 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.060 S = 1.03 3714 reflections 223 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810017915/wm2332sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810017915/wm2332Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn3(C8H8O5)2(C3H3N2)2(C3H4N2)2]F(000) = 848
Mr = 834.71Dx = 1.718 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5397 reflections
a = 7.9993 (1) Åθ = 1.8–27.6°
b = 22.3923 (2) ŵ = 2.28 mm1
c = 9.7586 (1) ÅT = 296 K
β = 112.633 (1)°Block, colourless
V = 1613.37 (3) Å30.28 × 0.17 × 0.09 mm
Z = 2
Bruker APEXII CCD diffractometer3714 independent reflections
Radiation source: fine-focus sealed tube3197 reflections with I > 2σ(I)
graphiteRint = 0.023
ω scansθmax = 27.6°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.629, Tmax = 0.822k = −29→28
13439 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.024Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.060H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0306P)2 + 0.4382P] where P = (Fo2 + 2Fc2)/3
3714 reflections(Δ/σ)max = 0.001
223 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.02705 (3)0.327653 (8)0.68480 (2)0.02488 (7)
Zn20.00000.50001.00000.02427 (8)
C10.5856 (3)0.35035 (11)0.8423 (3)0.0508 (6)
H1A0.70150.34150.84760.061*
C20.4334 (3)0.31994 (10)0.7673 (3)0.0471 (5)
H2A0.42590.28600.71030.057*
C30.3601 (3)0.39293 (9)0.8744 (2)0.0391 (5)
H3A0.29430.41960.90730.047*
C4−0.1719 (3)0.18968 (8)0.8571 (2)0.0333 (4)
H4A−0.24510.15650.84880.040*
C5−0.1783 (3)0.22588 (8)0.7447 (2)0.0325 (4)
H5A−0.25660.22180.64590.039*
C60.0280 (3)0.25794 (8)0.94487 (19)0.0293 (4)
H6A0.12060.28101.01100.035*
C7−0.1093 (2)0.44234 (7)0.70651 (18)0.0222 (3)
C8−0.1796 (2)0.50314 (7)0.64085 (19)0.0230 (3)
H8A−0.23750.50010.53250.028*
C9−0.3146 (2)0.52910 (8)0.70277 (19)0.0267 (4)
H9A−0.39370.49910.71980.032*
C10−0.4169 (3)0.58168 (8)0.6063 (2)0.0364 (4)
H10A−0.52170.59270.62770.044*
H10B−0.45550.57260.50150.044*
C11−0.2716 (3)0.63123 (8)0.6539 (2)0.0395 (5)
H11A−0.24650.64590.57020.047*
H11B−0.30780.66440.70030.047*
C12−0.1090 (3)0.59822 (8)0.7649 (2)0.0296 (4)
H12A−0.01770.62480.83360.036*
C13−0.0311 (2)0.55369 (7)0.68508 (19)0.0250 (4)
H13A−0.02820.57220.59500.030*
C140.1603 (2)0.53377 (8)0.78551 (19)0.0265 (4)
N1−0.0501 (2)0.26968 (6)0.80047 (16)0.0281 (3)
N2−0.0394 (2)0.20990 (6)0.98546 (16)0.0288 (3)
N30.2899 (2)0.34675 (7)0.78774 (18)0.0333 (4)
N40.5372 (2)0.39636 (8)0.9085 (2)0.0429 (4)
H4B0.60870.42320.96320.051*
O1−0.19478 (17)0.55896 (5)0.83772 (13)0.0271 (3)
O2−0.09952 (19)0.40346 (5)0.61684 (13)0.0326 (3)
O30.2753 (2)0.52710 (8)0.73430 (17)0.0515 (4)
O4−0.06572 (18)0.43224 (5)0.84191 (13)0.0293 (3)
O50.19131 (16)0.52692 (6)0.92484 (13)0.0299 (3)
U11U22U33U12U13U23
Zn10.03053 (12)0.02231 (11)0.02322 (11)−0.00257 (8)0.01193 (9)−0.00100 (7)
Zn20.02831 (15)0.02813 (15)0.01822 (14)−0.00145 (11)0.01100 (12)−0.00224 (10)
C10.0314 (11)0.0607 (14)0.0607 (15)−0.0008 (10)0.0180 (11)−0.0062 (12)
C20.0400 (12)0.0476 (13)0.0559 (14)0.0009 (9)0.0209 (11)−0.0142 (10)
C30.0339 (10)0.0342 (10)0.0435 (12)0.0002 (8)0.0085 (9)−0.0071 (9)
C40.0360 (10)0.0285 (9)0.0353 (11)−0.0069 (8)0.0135 (9)0.0026 (8)
C50.0348 (10)0.0339 (10)0.0254 (9)−0.0060 (8)0.0077 (8)0.0002 (7)
C60.0355 (10)0.0247 (9)0.0267 (9)−0.0021 (7)0.0107 (8)0.0007 (7)
C70.0217 (8)0.0222 (8)0.0228 (9)−0.0034 (6)0.0088 (7)−0.0027 (6)
C80.0265 (9)0.0228 (8)0.0185 (8)−0.0016 (6)0.0075 (7)−0.0007 (6)
C90.0256 (9)0.0266 (9)0.0275 (9)−0.0022 (7)0.0096 (7)−0.0005 (7)
C100.0303 (10)0.0353 (10)0.0400 (11)0.0077 (8)0.0095 (9)0.0041 (8)
C110.0435 (12)0.0266 (10)0.0465 (12)0.0070 (8)0.0154 (10)0.0055 (8)
C120.0342 (10)0.0217 (8)0.0334 (10)−0.0031 (7)0.0134 (8)−0.0021 (7)
C130.0287 (9)0.0253 (8)0.0229 (8)−0.0028 (7)0.0121 (7)0.0023 (6)
C140.0271 (9)0.0272 (9)0.0270 (9)−0.0059 (7)0.0124 (8)−0.0009 (7)
N10.0341 (8)0.0252 (7)0.0249 (8)−0.0016 (6)0.0114 (7)0.0028 (6)
N20.0376 (9)0.0254 (8)0.0256 (8)0.0013 (6)0.0148 (7)0.0035 (6)
N30.0301 (8)0.0309 (8)0.0371 (9)−0.0032 (7)0.0110 (7)−0.0046 (7)
N40.0319 (9)0.0396 (9)0.0461 (11)−0.0091 (7)0.0028 (8)−0.0045 (8)
O10.0316 (7)0.0272 (6)0.0250 (6)0.0010 (5)0.0136 (5)−0.0020 (5)
O20.0497 (8)0.0243 (6)0.0235 (6)0.0059 (5)0.0137 (6)−0.0031 (5)
O30.0368 (8)0.0864 (12)0.0406 (9)0.0114 (8)0.0249 (7)0.0152 (8)
O40.0439 (8)0.0233 (6)0.0203 (6)0.0005 (5)0.0120 (6)−0.0004 (5)
O50.0258 (6)0.0419 (7)0.0226 (6)−0.0049 (5)0.0099 (5)−0.0012 (5)
Zn1—O21.9570 (12)C6—H6A0.9300
Zn1—N11.9686 (14)C7—O41.251 (2)
Zn1—N2i1.9944 (14)C7—O21.2578 (19)
Zn1—N31.9968 (16)C7—C81.518 (2)
Zn2—O5ii2.0266 (12)C8—C91.540 (2)
Zn2—O52.0266 (12)C8—C131.576 (2)
Zn2—O42.0819 (12)C8—H8A0.9800
Zn2—O4ii2.0819 (12)C9—O11.459 (2)
Zn2—O1ii2.1862 (12)C9—C101.533 (2)
Zn2—O12.1862 (12)C9—H9A0.9800
C1—C21.340 (3)C10—C111.543 (3)
C1—N41.350 (3)C10—H10A0.9700
C1—H1A0.9300C10—H10B0.9700
C2—N31.376 (3)C11—C121.525 (3)
C2—H2A0.9300C11—H11A0.9700
C3—N31.317 (2)C11—H11B0.9700
C3—N41.327 (3)C12—O11.457 (2)
C3—H3A0.9300C12—C131.537 (2)
C4—C51.349 (3)C12—H12A0.9800
C4—N21.369 (2)C13—C141.533 (2)
C4—H4A0.9300C13—H13A0.9800
C5—N11.371 (2)C14—O31.213 (2)
C5—H5A0.9300C14—O51.294 (2)
C6—N11.329 (2)N2—Zn1iii1.9944 (14)
C6—N21.330 (2)N4—H4B0.8600
O2—Zn1—N1122.06 (6)C10—C9—C8109.78 (15)
O2—Zn1—N2i97.25 (6)O1—C9—H9A113.8
N1—Zn1—N2i104.86 (6)C10—C9—H9A113.8
O2—Zn1—N3106.98 (6)C8—C9—H9A113.8
N1—Zn1—N3110.76 (7)C9—C10—C11101.84 (15)
N2i—Zn1—N3114.52 (7)C9—C10—H10A111.4
O5ii—Zn2—O5180.000 (1)C11—C10—H10A111.4
O5ii—Zn2—O492.34 (5)C9—C10—H10B111.4
O5—Zn2—O487.66 (5)C11—C10—H10B111.4
O5ii—Zn2—O4ii87.66 (5)H10A—C10—H10B109.3
O5—Zn2—O4ii92.34 (5)C12—C11—C10101.71 (15)
O4—Zn2—O4ii180.0C12—C11—H11A111.4
O5ii—Zn2—O1ii89.15 (5)C10—C11—H11A111.4
O5—Zn2—O1ii90.85 (5)C12—C11—H11B111.4
O4—Zn2—O1ii90.17 (4)C10—C11—H11B111.4
O4ii—Zn2—O1ii89.83 (4)H11A—C11—H11B109.3
O5ii—Zn2—O190.85 (5)O1—C12—C11101.88 (15)
O5—Zn2—O189.15 (5)O1—C12—C13102.39 (13)
O4—Zn2—O189.83 (4)C11—C12—C13110.85 (16)
O4ii—Zn2—O190.17 (4)O1—C12—H12A113.5
O1ii—Zn2—O1180.0C11—C12—H12A113.5
C2—C1—N4106.4 (2)C13—C12—H12A113.5
C2—C1—H1A126.8C14—C13—C12111.41 (14)
N4—C1—H1A126.8C14—C13—C8115.37 (13)
C1—C2—N3109.4 (2)C12—C13—C8101.21 (13)
C1—C2—H2A125.3C14—C13—H13A109.5
N3—C2—H2A125.3C12—C13—H13A109.5
N3—C3—N4110.88 (18)C8—C13—H13A109.5
N3—C3—H3A124.6O3—C14—O5123.32 (17)
N4—C3—H3A124.6O3—C14—C13120.10 (16)
C5—C4—N2108.61 (16)O5—C14—C13116.54 (15)
C5—C4—H4A125.7C6—N1—C5104.69 (15)
N2—C4—H4A125.7C6—N1—Zn1127.96 (13)
C4—C5—N1108.57 (16)C5—N1—Zn1126.56 (12)
C4—C5—H5A125.7C6—N2—C4104.75 (14)
N1—C5—H5A125.7C6—N2—Zn1iii130.16 (12)
N1—C6—N2113.37 (16)C4—N2—Zn1iii125.09 (12)
N1—C6—H6A123.3C3—N3—C2105.22 (17)
N2—C6—H6A123.3C3—N3—Zn1126.68 (14)
O4—C7—O2122.91 (15)C2—N3—Zn1127.52 (14)
O4—C7—C8121.03 (15)C3—N4—C1108.14 (17)
O2—C7—C8116.06 (15)C3—N4—H4B125.9
C7—C8—C9112.03 (14)C1—N4—H4B125.9
C7—C8—C13114.24 (14)C12—O1—C996.04 (12)
C9—C8—C13100.96 (13)C12—O1—Zn2112.31 (10)
C7—C8—H8A109.8C9—O1—Zn2114.50 (9)
C9—C8—H8A109.8C7—O2—Zn1121.81 (11)
C13—C8—H8A109.8C7—O4—Zn2122.65 (10)
O1—C9—C10102.25 (14)C14—O5—Zn2123.34 (11)
O1—C9—C8102.16 (13)
N4—C1—C2—N3−0.5 (3)C1—C2—N3—C30.3 (3)
N2—C4—C5—N1−0.1 (2)C1—C2—N3—Zn1171.94 (17)
O4—C7—C8—C9−42.3 (2)O2—Zn1—N3—C338.44 (19)
O2—C7—C8—C9137.10 (16)N1—Zn1—N3—C3−96.74 (18)
O4—C7—C8—C1371.7 (2)N2i—Zn1—N3—C3144.95 (17)
O2—C7—C8—C13−108.87 (17)O2—Zn1—N3—C2−131.53 (18)
C7—C8—C9—O186.39 (15)N1—Zn1—N3—C293.29 (19)
C13—C8—C9—O1−35.59 (15)N2i—Zn1—N3—C2−25.0 (2)
C7—C8—C9—C10−165.65 (14)N3—C3—N4—C1−0.4 (3)
C13—C8—C9—C1072.37 (16)C2—C1—N4—C30.5 (3)
O1—C9—C10—C1133.06 (18)C11—C12—O1—C957.35 (15)
C8—C9—C10—C11−74.84 (18)C13—C12—O1—C9−57.40 (14)
C9—C10—C11—C122.0 (2)C11—C12—O1—Zn2176.96 (11)
C10—C11—C12—O1−36.52 (18)C13—C12—O1—Zn262.21 (13)
C10—C11—C12—C1371.83 (19)C10—C9—O1—C12−55.89 (15)
O1—C12—C13—C14−88.49 (16)C8—C9—O1—C1257.76 (14)
C11—C12—C13—C14163.49 (15)C10—C9—O1—Zn2−173.78 (11)
O1—C12—C13—C834.66 (16)C8—C9—O1—Zn2−60.13 (13)
C11—C12—C13—C8−73.36 (17)O5ii—Zn2—O1—C12170.75 (10)
C7—C8—C13—C140.5 (2)O5—Zn2—O1—C12−9.25 (10)
C9—C8—C13—C14120.96 (15)O4—Zn2—O1—C12−96.91 (10)
C7—C8—C13—C12−119.84 (15)O4ii—Zn2—O1—C1283.09 (10)
C9—C8—C13—C120.57 (16)O5ii—Zn2—O1—C9−81.07 (11)
C12—C13—C14—O3−140.91 (18)O5—Zn2—O1—C998.93 (11)
C8—C13—C14—O3104.4 (2)O4—Zn2—O1—C911.27 (11)
C12—C13—C14—O536.7 (2)O4ii—Zn2—O1—C9−168.73 (11)
C8—C13—C14—O5−77.90 (19)O4—C7—O2—Zn1−11.7 (2)
N2—C6—N1—C50.4 (2)C8—C7—O2—Zn1168.88 (11)
N2—C6—N1—Zn1−169.85 (12)N1—Zn1—O2—C761.89 (16)
C4—C5—N1—C6−0.2 (2)N2i—Zn1—O2—C7174.51 (14)
C4—C5—N1—Zn1170.27 (13)N3—Zn1—O2—C7−67.06 (15)
O2—Zn1—N1—C6−105.18 (16)O2—C7—O4—Zn2159.29 (13)
N2i—Zn1—N1—C6146.15 (16)C8—C7—O4—Zn2−21.3 (2)
N3—Zn1—N1—C622.12 (17)O5ii—Zn2—O4—C7124.12 (14)
O2—Zn1—N1—C586.57 (16)O5—Zn2—O4—C7−55.88 (14)
N2i—Zn1—N1—C5−22.11 (17)O1ii—Zn2—O4—C7−146.73 (14)
N3—Zn1—N1—C5−146.14 (15)O1—Zn2—O4—C733.27 (14)
N1—C6—N2—C4−0.5 (2)O3—C14—O5—Zn2−150.62 (16)
N1—C6—N2—Zn1iii179.67 (12)C13—C14—O5—Zn231.8 (2)
C5—C4—N2—C60.3 (2)O4—Zn2—O5—C1447.74 (14)
C5—C4—N2—Zn1iii−179.80 (13)O4ii—Zn2—O5—C14−132.26 (14)
N4—C3—N3—C20.1 (2)O1ii—Zn2—O5—C14137.88 (14)
N4—C3—N3—Zn1−171.69 (14)O1—Zn2—O5—C14−42.12 (14)
D—H···AD—HH···AD···AD—H···A
N4—H4B···O5iv0.861.912.756 (2)167
Table 1

Selected bond lengths (Å)

Zn1—O21.9570 (12)
Zn1—N11.9686 (14)
Zn1—N2i1.9944 (14)
Zn1—N31.9968 (16)
Zn2—O52.0266 (12)
Zn2—O42.0819 (12)
Zn2—O12.1862 (12)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4B⋯O5ii0.861.912.756 (2)167

Symmetry code: (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A new antitumour substance, 7-oxabicyclo (2.2.1)-5-heptene-2,3-dicarboxylic anhydride.

Authors:  I R Shimi; Z Zaki; S Shoukry; A M Medhat
Journal:  Eur J Cancer Clin Oncol       Date:  1982-08
  2 in total

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