Literature DB >> 21579314

Bis(2,2'-bipyridyl dioxide-κN,N')bis-(tricyano-methanido)cobalt(II) dihydrate.

Li-Juan Qiu1, Jun Luo, Xin-Rong Zhang, Bao-Shu Liu.   

Abstract

In the title compound, [Co(C(4)N(3))(2)(C(10)H(8)N(2)O(2))]·2H(2)O, a novel tricyano-methanide complex, the Co(II) atom is located on an inversion center and has a distorted octa-hedral coordination with two 2,2'-bipyridyl dioxide (dpdo) mol-ecules and two trans tricyano-methanide (tcm) anions. The equatorial plane is formed by the four O atoms of the two chelating dpdo ligands, with one N atom of each of the two tcm ligands occupying an apical position. There is a disordered solvent water mol-ecule in the asymmetric unit (occupancy ratio 0.63:0.37). These water mol-ecules result in the formation of O-H⋯O and O-H⋯N hydrogen bonds, building a layer parallel to (100). The layers are linked by C-H⋯N hydrogen-bonding inter-actions, leading to a three-dimensional network.

Entities:  

Year:  2010        PMID: 21579314      PMCID: PMC2979455          DOI: 10.1107/S1600536810017435

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For coordination polymers constructed with tricyano­methanide, see: Abrahams et al. (2003 ▶); Batten & Murray (2003 ▶); Batten et al. (1998 ▶, 1999 ▶, 2000 ▶); Feyerherm et al. (2003 ▶, 2004 ▶); Hoshino et al. (1999 ▶); Manson & Schlueter (2004 ▶); Manson et al. (1998 ▶, 2000 ▶); Miller & Manson (2001 ▶); Yuste et al. (2007 ▶, 2008 ▶). For complexes containing dpdo, see: Luo et al. (2009 ▶); Zhang et al. (2010 ▶); Su & Lan (2007 ▶).

Experimental

Crystal data

[Co(C4N3)2(C10H8N2O2)]·2n class="Chemical">H2O M = 651.47 Monoclinic, a = 9.575 (3) Å b = 16.699 (6) Å c = 9.442 (3) Å β = 95.307 (4)° V = 1503.3 (9) Å3 Z = 2 Mo Kα radiation μ = 0.63 mm−1 T = 293 K 0.15 × 0.12 × 0.10 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.911, T max = 0.940 7102 measured reflections 3193 independent reflections 2511 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.084 S = 0.99 3193 reflections 214 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810017435/dn2560sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810017435/dn2560Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C4N3)2(C10H8N2O2)]·2H2OF(000) = 666
Mr = 651.47Dx = 1.439 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 887 reflections
a = 9.575 (3) Åθ = 2.5–26.6°
b = 16.699 (6) ŵ = 0.63 mm1
c = 9.442 (3) ÅT = 293 K
β = 95.307 (4)°Block, orange
V = 1503.3 (9) Å30.15 × 0.12 × 0.10 mm
Z = 2
Bruker SMART APEX CCD area-detector diffractometer3193 independent reflections
Radiation source: fine-focus sealed tube2511 reflections with I > 2σ(I)
graphiteRint = 0.026
phi and ω scansθmax = 27.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −12→7
Tmin = 0.911, Tmax = 0.940k = −20→18
7102 measured reflectionsl = −8→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.0476P)2] where P = (Fo2 + 2Fc2)/3
3193 reflections(Δ/σ)max < 0.001
214 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Co10.50000.50000.50000.03207 (11)
O10.63648 (11)0.55420 (6)0.37193 (12)0.0390 (3)
O20.60938 (11)0.55988 (6)0.66433 (12)0.0390 (3)
N10.64813 (13)0.63342 (7)0.38754 (14)0.0361 (3)
N20.74874 (13)0.55615 (7)0.67045 (14)0.0371 (3)
N30.36144 (13)0.59847 (8)0.48907 (16)0.0451 (4)
N40.3061 (2)0.85771 (11)0.5359 (3)0.0933 (7)
N50.0012 (2)0.71277 (15)0.2587 (3)0.1017 (8)
C10.57248 (18)0.68142 (10)0.29627 (19)0.0447 (4)
H10.51310.65950.22290.054*
C20.5829 (2)0.76308 (11)0.3113 (2)0.0519 (5)
H20.52950.79640.24870.062*
C30.6710 (2)0.79551 (10)0.4175 (2)0.0524 (5)
H30.67800.85080.42830.063*
C40.74983 (19)0.74506 (10)0.5088 (2)0.0476 (4)
H40.81230.76640.58020.057*
C50.73654 (16)0.66330 (9)0.49468 (18)0.0374 (4)
C60.81807 (16)0.60621 (9)0.58911 (18)0.0394 (4)
C70.96264 (18)0.60478 (12)0.6027 (2)0.0591 (5)
H71.01180.63990.54930.071*
C81.0347 (2)0.55240 (13)0.6937 (3)0.0707 (6)
H81.13230.55150.70190.085*
C90.9616 (2)0.50173 (12)0.7720 (3)0.0643 (6)
H91.00920.46530.83330.077*
C100.8172 (2)0.50427 (9)0.7606 (2)0.0494 (5)
H100.76730.47010.81530.059*
C110.29971 (16)0.65579 (10)0.45990 (19)0.0400 (4)
C120.22334 (18)0.72533 (10)0.4249 (2)0.0471 (4)
C130.2679 (2)0.79855 (12)0.4860 (3)0.0598 (5)
C140.1018 (2)0.71979 (11)0.3308 (2)0.0607 (5)
O30.6888 (5)0.5258 (4)0.0838 (8)0.0781 (13)0.63
H3A0.67970.47490.07800.117*0.63
H3B0.67150.53850.16850.117*0.63
O3B0.6196 (10)0.5240 (9)0.0694 (16)0.108 (4)0.37
H3C0.63430.47760.03620.162*0.37
H3D0.61490.51870.15910.162*0.37
U11U22U33U12U13U23
Co10.03347 (17)0.02267 (16)0.03967 (19)−0.00084 (11)0.00116 (12)−0.00023 (12)
O10.0486 (6)0.0276 (5)0.0414 (6)−0.0048 (5)0.0064 (5)−0.0029 (5)
O20.0377 (6)0.0376 (6)0.0418 (6)−0.0045 (5)0.0037 (5)−0.0035 (5)
N10.0404 (7)0.0305 (7)0.0378 (8)−0.0036 (5)0.0055 (6)0.0028 (6)
N20.0399 (7)0.0321 (7)0.0380 (8)−0.0036 (6)−0.0035 (6)−0.0019 (6)
N30.0413 (8)0.0309 (7)0.0620 (10)0.0021 (6)−0.0015 (7)−0.0011 (7)
N40.1096 (17)0.0452 (11)0.1228 (19)0.0050 (10)−0.0019 (14)−0.0175 (12)
N50.0858 (15)0.0982 (16)0.1116 (19)0.0178 (12)−0.0413 (15)0.0107 (13)
C10.0485 (10)0.0441 (10)0.0410 (10)−0.0025 (7)0.0006 (8)0.0083 (8)
C20.0592 (11)0.0422 (10)0.0548 (12)0.0059 (8)0.0086 (9)0.0175 (9)
C30.0689 (12)0.0290 (9)0.0611 (13)−0.0025 (8)0.0147 (10)0.0080 (8)
C40.0546 (11)0.0361 (9)0.0522 (11)−0.0107 (8)0.0053 (8)−0.0011 (8)
C50.0375 (8)0.0324 (8)0.0421 (9)−0.0057 (6)0.0030 (7)0.0019 (7)
C60.0389 (9)0.0327 (8)0.0457 (10)−0.0061 (6)−0.0015 (7)0.0003 (7)
C70.0401 (10)0.0592 (12)0.0771 (15)−0.0072 (9)0.0000 (9)0.0098 (11)
C80.0439 (11)0.0753 (15)0.0897 (17)0.0017 (10)−0.0113 (11)0.0099 (13)
C90.0636 (14)0.0550 (12)0.0692 (15)0.0087 (10)−0.0214 (11)0.0057 (10)
C100.0594 (11)0.0387 (10)0.0475 (11)−0.0013 (8)−0.0091 (9)0.0075 (8)
C110.0370 (9)0.0349 (9)0.0481 (10)−0.0006 (7)0.0030 (7)−0.0011 (7)
C120.0464 (10)0.0353 (9)0.0590 (12)0.0099 (7)0.0019 (9)0.0029 (8)
C130.0659 (13)0.0389 (11)0.0748 (15)0.0136 (9)0.0073 (11)−0.0003 (10)
C140.0626 (13)0.0488 (11)0.0688 (14)0.0153 (9)−0.0046 (11)0.0099 (10)
O30.118 (4)0.0587 (17)0.058 (2)0.012 (3)0.015 (3)−0.0030 (15)
O3B0.164 (11)0.086 (4)0.075 (5)0.034 (8)0.018 (8)−0.002 (4)
Co1—O22.0503 (11)C4—H40.9300
Co1—O2i2.0503 (11)C5—C61.478 (2)
Co1—O12.0691 (11)C6—C71.378 (2)
Co1—O1i2.0691 (11)C7—C81.367 (3)
Co1—N3i2.1093 (14)C7—H70.9300
Co1—N32.1093 (14)C8—C91.359 (3)
O1—N11.3346 (16)C8—H80.9300
O2—N21.3318 (16)C9—C101.378 (3)
N1—C11.340 (2)C9—H90.9300
N1—C51.353 (2)C10—H100.9300
N2—C101.342 (2)C11—C121.396 (2)
N2—C61.350 (2)C12—C141.400 (3)
N3—C111.145 (2)C12—C131.401 (3)
N4—C131.140 (3)O3—H3A0.8567
N5—C141.134 (3)O3—H3B0.8584
C1—C21.374 (3)O3—H3C1.0384
C1—H10.9300O3—H3D1.0555
C2—C31.362 (3)O3B—H3A1.0017
C2—H20.9300O3B—H3B1.0464
C3—C41.379 (3)O3B—H3C0.8522
C3—H30.9300O3B—H3D0.8564
C4—C51.376 (2)
O2—Co1—O2i180.00 (5)N1—C5—C4118.94 (15)
O2—Co1—O185.58 (5)N1—C5—C6118.18 (13)
O2i—Co1—O194.42 (5)C4—C5—C6122.86 (15)
O2—Co1—O1i94.42 (5)N2—C6—C7118.58 (16)
O2i—Co1—O1i85.58 (5)N2—C6—C5118.84 (14)
O1—Co1—O1i180.00 (5)C7—C6—C5122.49 (15)
O2—Co1—N3i93.91 (5)C8—C7—C6120.92 (19)
O2i—Co1—N3i86.09 (5)C8—C7—H7119.5
O1—Co1—N3i86.63 (5)C6—C7—H7119.5
O1i—Co1—N3i93.37 (5)C9—C8—C7118.97 (19)
O2—Co1—N386.09 (5)C9—C8—H8120.5
O2i—Co1—N393.91 (5)C7—C8—H8120.5
O1—Co1—N393.37 (5)C8—C9—C10120.15 (18)
O1i—Co1—N386.63 (5)C8—C9—H9119.9
N3i—Co1—N3180.0C10—C9—H9119.9
N1—O1—Co1114.83 (9)N2—C10—C9119.79 (17)
N2—O2—Co1116.72 (9)N2—C10—H10120.1
O1—N1—C1119.17 (13)C9—C10—H10120.1
O1—N1—C5119.23 (12)N3—C11—C12179.43 (19)
C1—N1—C5121.60 (14)C11—C12—C14118.80 (16)
O2—N2—C10119.10 (14)C11—C12—C13119.73 (16)
O2—N2—C6119.31 (12)C14—C12—C13121.46 (15)
C10—N2—C6121.56 (15)N4—C13—C12179.0 (2)
C11—N3—Co1166.34 (15)N5—C14—C12176.8 (3)
N1—C1—C2119.85 (16)H3A—O3—H3B106.1
N1—C1—H1120.1H3A—O3—H3C32.7
C2—C1—H1120.1H3B—O3—H3C117.5
C3—C2—C1120.34 (16)H3A—O3—H3D82.0
C3—C2—H2119.8H3B—O3—H3D36.9
C1—C2—H2119.8H3C—O3—H3D82.1
C2—C3—C4118.89 (17)H3A—O3B—H3B84.0
C2—C3—H3120.6H3A—O3B—H3C34.1
C4—C3—H3120.6H3B—O3B—H3C117.3
C5—C4—C3120.36 (17)H3A—O3B—H3D85.3
C5—C4—H4119.8H3B—O3B—H3D37.3
C3—C4—H4119.8H3C—O3B—H3D107.2
D—H···AD—HH···AD···AD—H···A
O3—H3B···O10.862.002.851 (8)173
O3B—H3D···O10.862.092.890 (15)156
O3—H3A···N4ii0.862.243.028 (8)152
O3B—H3C···N4ii0.852.213.056 (15)174
C1—H1···N4iii0.932.553.437 (3)161
C4—H4···N5iv0.932.383.287 (3)165
C10—H10···N4v0.932.483.390 (3)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3B⋯O10.862.002.851 (8)173
O3B—H3D⋯O10.862.092.890 (15)156
O3—H3A⋯N4i0.862.243.028 (8)152
O3B—H3C⋯N4i0.852.213.056 (15)174
C1—H1⋯N4ii0.932.553.437 (3)161
C4—H4⋯N5iii0.932.383.287 (3)165
C10—H10⋯N4iv0.932.483.390 (3)164

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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Authors: 
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7.  Designer magnets containing cyanides and nitriles.

Authors:  J S Miller; J L Manson
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8.  Ligand effects on the structures and magnetic properties of tricyanomethanide-containing copper(II) complexes.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-22

10.  Structure validation in chemical crystallography.

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