Literature DB >> 21579281

Triaqua-(1,4,7-triaza-cyclo-nonane-κN,N,N)nickel(II) bromide nitrate.

Changchun Wen1, Jianqi Lu, Zhong Zhang.   

Abstract

In the title half-sandwich compound, [Ni(C(6)H(15)N(3))(H(2)O)(3)]Br(NO(3)), the central Ni(II) ion, lying on a threefold rotation axis, is six-coordinated by three amine N atoms from the face-capping triaza macrocycle and three water O atoms in a slightly distorted octa-hedral geometry. In the crystal, O-H⋯O hydrogen bonding and weak O-H⋯Br inter-actions associate the Ni(II) cations and the counter-ions into a three-dimensional supra-molecular network.

Entities:  

Year:  2010        PMID: 21579281      PMCID: PMC2979567          DOI: 10.1107/S160053681001620X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of 1,4,7-triaza­cyclo­nonane trihydro­bromide, see: Koyama & Yoshino (1972 ▶). For the applications of metal complexes containing 1,4,7-triaza­cyclo­nonane as small-mol­ecule models of metalloenzymes and metalloproteins and as mol­ecule-based magnets, see: Berseth et al. (2000 ▶); Chaudhury et al. (1985 ▶); Cheng et al. (2004 ▶); Deal et al. (1996 ▶); Hegg & Burstyn (1995 ▶); Hegg et al. (1997 ▶); Lin et al. (2001 ▶); Poganiuch et al. (1991 ▶); Williams et al. (1999 ▶). For related NiII complexes with 1,4,7-triaza­cyclo­nonane, see: Bencini et al. (1990 ▶); Stranger et al. (1992 ▶); Wang et al. (2003 ▶, 2005 ▶); Zompa & Margulis (1978 ▶).

Experimental

Crystal data

[Ni(C6H15N3)(H2O)3]Br(NO3) M = 383.89 Cubic, a = 11.300 (1) Å V = 1442.9 (3) Å3 Z = 4 Mo Kα radiation μ = 4.14 mm−1 T = 298 K 0.29 × 0.27 × 0.18 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.320, T max = 0.480 15223 measured reflections 1110 independent reflections 985 reflections with I > 2σ(I) R int = 0.080

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.072 S = 1.03 1110 reflections 61 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.47 e Å−3 Absolute structure: Flack (1983 ▶), 475 Friedel pairs Flack parameter: 0.01 (3) Data collection: APEX2 (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681001620X/pb2027sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681001620X/pb2027Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C6H15N3)(H2O)3]Br(NO3)Dx = 1.767 Mg m3
Mr = 383.89Mo Kα radiation, λ = 0.71073 Å
Cubic, P213Cell parameters from 13409 reflections
Hall symbol: P 2ac 2ab 3θ = 3.1–27.4°
a = 11.300 (1) ŵ = 4.14 mm1
V = 1442.9 (3) Å3T = 298 K
Z = 4Plate, green
F(000) = 7840.29 × 0.27 × 0.18 mm
Bruker APEXII CCD area-detector diffractometer1110 independent reflections
Radiation source: fine-focus sealed tube985 reflections with I > 2σ(I)
graphiteRint = 0.080
φ and ω scansθmax = 27.4°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −14→14
Tmin = 0.320, Tmax = 0.480k = −14→14
15223 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.072w = 1/[σ2(Fo2) + (0.0232P)2 + 1.6516P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
8717 reflectionsΔρmax = 0.36 e Å3
61 parametersΔρmin = −0.46 e Å3
0 restraintsAbsolute structure: Flack (1983), 475 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.01 (3)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni11.06169 (4)0.56169 (4)0.93831 (4)0.02729 (19)
Br10.25347 (4)0.24653 (4)0.75347 (4)0.0437 (2)
C10.8566 (4)0.4233 (4)0.8872 (4)0.0437 (11)
H1A0.81230.34980.88580.052*
H1B0.84380.46360.81250.052*
C21.0118 (4)0.3128 (4)0.9995 (4)0.0449 (11)
H2A1.03260.23650.96600.054*
H2B0.94170.30221.04780.054*
N10.9850 (3)0.3973 (3)0.9019 (3)0.0353 (8)
H31.02260.36310.84070.053*
N20.9466 (3)0.9466 (3)0.9466 (3)0.0316 (11)
O11.0196 (3)0.6447 (3)0.7786 (3)0.0391 (8)
O20.8854 (3)1.0345 (3)0.9196 (3)0.0577 (9)
H4B0.947 (5)0.659 (4)0.765 (4)0.050 (14)*
H4A1.040 (4)0.598 (4)0.723 (4)0.050 (14)*
U11U22U33U12U13U23
Ni10.02729 (19)0.02729 (19)0.02729 (19)−0.0011 (2)0.0011 (2)0.0011 (2)
Br10.0437 (2)0.0437 (2)0.0437 (2)−0.0012 (2)0.0012 (2)−0.0012 (2)
C10.041 (2)0.042 (3)0.049 (3)−0.016 (2)−0.009 (2)0.005 (2)
C20.054 (3)0.027 (2)0.054 (3)−0.0022 (19)0.010 (2)0.0063 (19)
N10.0365 (19)0.0349 (19)0.0346 (19)−0.0022 (14)0.0050 (14)−0.0021 (14)
N20.0316 (11)0.0316 (11)0.0316 (11)0.0002 (15)0.0002 (15)0.0002 (15)
O10.0424 (18)0.0419 (18)0.0330 (18)0.0052 (14)−0.0007 (13)0.0024 (12)
O20.055 (2)0.054 (2)0.065 (2)0.0156 (16)0.0149 (17)0.0133 (18)
Ni1—O1i2.089 (3)C2—N11.490 (5)
Ni1—O12.089 (3)C2—C1ii1.520 (6)
Ni1—O1ii2.089 (3)C2—H2A0.9700
Ni1—N12.091 (3)C2—H2B0.9700
Ni1—N1ii2.091 (3)N1—H30.8987
Ni1—N1i2.091 (3)N2—O2iii1.248 (3)
C1—N11.490 (6)N2—O2iv1.248 (3)
C1—C2i1.520 (6)N2—O21.248 (3)
C1—H1A0.9700O1—H4B0.85 (5)
C1—H1B0.9700O1—H4A0.84 (4)
O1i—Ni1—O184.90 (14)H1A—C1—H1B108.1
O1i—Ni1—O1ii84.90 (14)N1—C2—C1ii111.7 (3)
O1—Ni1—O1ii84.90 (14)N1—C2—H2A109.3
O1i—Ni1—N1177.00 (13)C1ii—C2—H2A109.3
O1—Ni1—N197.72 (13)N1—C2—H2B109.3
O1ii—Ni1—N193.87 (12)C1ii—C2—H2B109.3
O1i—Ni1—N1ii93.87 (12)H2A—C2—H2B108.0
O1—Ni1—N1ii177.00 (13)C1—N1—C2114.0 (3)
O1ii—Ni1—N1ii97.72 (12)C1—N1—Ni1104.5 (3)
N1—Ni1—N1ii83.58 (14)C2—N1—Ni1109.8 (3)
O1i—Ni1—N1i97.72 (12)C1—N1—H3117.3
O1—Ni1—N1i93.87 (12)C2—N1—H3101.4
O1ii—Ni1—N1i177.00 (13)Ni1—N1—H3109.7
N1—Ni1—N1i83.58 (14)O2iii—N2—O2iv119.999 (2)
N1ii—Ni1—N1i83.58 (14)O2iii—N2—O2120.000 (3)
N1—C1—C2i110.3 (4)O2iv—N2—O2120.000 (2)
N1—C1—H1A109.6Ni1—O1—H4B117 (4)
C2i—C1—H1A109.6Ni1—O1—H4A107 (4)
N1—C1—H1B109.6H4B—O1—H4A104 (5)
C2i—C1—H1B109.6
C2i—C1—N1—C272.1 (5)N1ii—Ni1—N1—C1114.6 (2)
C2i—C1—N1—Ni1−47.8 (4)N1i—Ni1—N1—C130.4 (3)
C1ii—C2—N1—C1−133.2 (4)O1—Ni1—N1—C2174.6 (3)
C1ii—C2—N1—Ni1−16.3 (4)O1ii—Ni1—N1—C289.3 (3)
O1—Ni1—N1—C1−62.7 (3)N1ii—Ni1—N1—C2−8.1 (3)
O1ii—Ni1—N1—C1−148.0 (3)N1i—Ni1—N1—C2−92.3 (2)
D—H···AD—HH···AD···AD—H···A
O1—H4A···O2v0.84 (4)1.95 (5)2.776 (5)162 (4)
O1—H4B···Br1vi0.85 (5)2.48 (5)3.312 (3)167 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H4A⋯O2i0.84 (4)1.95 (5)2.776 (5)162 (4)
O1—H4B⋯Br1ii0.85 (5)2.48 (5)3.312 (3)167 (4)

Symmetry codes: (i) ; (ii) .

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