Literature DB >> 21579244

9-(4-Chloro-phen-yl)-3,6-diphenyl-1,2,3,4,5,6,7,8-octa-hydro-9H-xanthene-1,8-dione.

Bin Cui1, Yan Jin, Fang-Ming Wang, Li-Zhuang Chen, Guang-Fan Han.   

Abstract

In the title compound, C(31)H(25)ClO(3), the central ring of the xanthene core shows a shallow boat conformation, while the outer six-membered rings display envelope conformations. The dihedral angle between the outer aromatic rings is 88.1 (3)° and the dihedral angles between the chloro-benzene ring and the two phenyl rings are 69.5 (2) and 69.6 (2)°.

Entities:  

Year:  2010        PMID: 21579244      PMCID: PMC2979079          DOI: 10.1107/S1600536810015151

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the applications of 3,6,9-tris­ubstituted-1,2,3,4,5,6,7,8-octa­hydroxanthene-1,8(5H,9H)-dione derivatives, see: Ion et al. (1998 ▶); Ahmad et al. (2002 ▶); Hunter & Beveridge (2005 ▶); Srihari et al. (2008 ▶).

Experimental

Crystal data

C31H25ClO3 M = 480.96 Orthorhombic, a = 9.7591 (14) Å b = 22.133 (3) Å c = 22.290 (3) Å V = 4814.7 (12) Å3 Z = 8 Mo Kα radiation μ = 0.19 mm−1 T = 291 K 0.25 × 0.20 × 0.10 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.955, T max = 0.980 24128 measured reflections 4697 independent reflections 2200 reflections with I > 2σ(I) R int = 0.094

Refinement

R[F 2 > 2σ(F 2)] = 0.088 wR(F 2) = 0.165 S = 1.02 4697 reflections 316 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810015151/hb5410sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810015151/hb5410Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C31H25ClO3F(000) = 2016
Mr = 480.96Dx = 1.327 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 1380 reflections
a = 9.7591 (14) Åθ = 2.8–17.6°
b = 22.133 (3) ŵ = 0.19 mm1
c = 22.290 (3) ÅT = 291 K
V = 4814.7 (12) Å3Block, colourless
Z = 80.25 × 0.20 × 0.10 mm
Bruker SMART CCD diffractometer4697 independent reflections
Radiation source: sealed tube2200 reflections with I > 2σ(I)
graphiteRint = 0.094
ω scansθmax = 26.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −10→12
Tmin = 0.955, Tmax = 0.980k = −27→26
24128 measured reflectionsl = −26→27
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.088Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.165H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0473P)2] where P = (Fo2 + 2Fc2)/3
4697 reflections(Δ/σ)max = 0.008
316 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5407 (5)0.39406 (18)0.3699 (2)0.0438 (12)
C20.4287 (5)0.4129 (2)0.3377 (2)0.0644 (15)
H2A0.39160.38700.30910.077*
C30.3694 (6)0.4681 (3)0.3460 (2)0.0804 (18)
H3A0.29360.47960.32350.097*
C40.4240 (7)0.5065 (2)0.3883 (3)0.087 (2)
H4A0.38620.54460.39410.104*
C50.5328 (7)0.4886 (2)0.4215 (3)0.0851 (19)
H5A0.56760.51450.45060.102*
C60.5935 (5)0.4326 (2)0.4132 (2)0.0625 (14)
H6A0.66850.42100.43620.075*
C70.6121 (5)0.33489 (18)0.3579 (2)0.0538 (13)
H7A0.68910.33300.38600.065*
C80.6723 (5)0.33250 (17)0.29750 (19)0.0569 (13)
H8A0.72780.36830.29130.068*
H8B0.59920.33290.26800.068*
C90.7607 (5)0.27671 (19)0.28747 (18)0.0454 (12)
C100.7150 (4)0.22155 (18)0.31741 (17)0.0367 (10)
C110.6030 (4)0.22346 (18)0.35110 (17)0.0376 (11)
C120.5260 (4)0.27893 (17)0.36980 (17)0.0429 (11)
H12A0.50410.27650.41220.052*
H12B0.44070.28150.34760.052*
C130.7974 (4)0.16464 (16)0.31002 (16)0.0357 (10)
H13A0.82890.16180.26840.043*
C140.9226 (4)0.16727 (16)0.35157 (17)0.0342 (10)
C150.9046 (5)0.16731 (19)0.41286 (19)0.0523 (13)
H15A0.81650.16480.42850.063*
C161.0139 (5)0.17096 (19)0.45124 (19)0.0548 (13)
H16A1.00040.16970.49250.066*
C171.1420 (4)0.17640 (17)0.42835 (19)0.0421 (11)
C181.1638 (4)0.17601 (18)0.36775 (19)0.0499 (12)
H18A1.25220.17910.35250.060*
C191.0548 (4)0.17107 (18)0.33007 (19)0.0456 (11)
H19A1.06980.17020.28890.055*
C200.7059 (4)0.11157 (18)0.32342 (17)0.0383 (11)
C210.7403 (5)0.05297 (19)0.29797 (19)0.0472 (12)
C220.6491 (5)0.00033 (18)0.3145 (2)0.0583 (13)
H22A0.5814−0.00510.28310.070*
H22B0.7045−0.03600.31600.070*
C230.5771 (5)0.00738 (18)0.3726 (2)0.0551 (13)
H23A0.64910.01120.40300.066*
C240.4988 (4)0.06699 (16)0.37386 (18)0.0444 (11)
H24A0.42060.06460.34710.053*
H24B0.46520.07460.41410.053*
C250.5903 (4)0.11740 (18)0.35479 (18)0.0403 (11)
C260.4916 (5)−0.04687 (19)0.3914 (2)0.0517 (13)
C270.4901 (6)−0.1005 (2)0.3610 (3)0.098 (2)
H27A0.5363−0.10360.32460.117*
C280.4208 (6)−0.1505 (2)0.3833 (3)0.111 (2)
H28A0.4232−0.18660.36200.133*
C290.3517 (6)−0.1480 (3)0.4342 (3)0.0870 (19)
H29A0.3090−0.18240.44930.104*
C300.3435 (7)−0.0948 (3)0.4644 (2)0.104 (2)
H30A0.2902−0.09170.49890.125*
C310.4161 (6)−0.0448 (2)0.4431 (2)0.0828 (19)
H31A0.4129−0.00890.46470.099*
Cl11.28146 (12)0.18272 (6)0.47779 (5)0.0683 (4)
O10.5432 (3)0.17227 (11)0.37532 (11)0.0434 (8)
O20.8609 (3)0.27660 (13)0.25570 (14)0.0682 (10)
O30.8359 (3)0.04721 (13)0.26316 (14)0.0641 (10)
U11U22U33U12U13U23
C10.050 (3)0.028 (3)0.054 (3)0.000 (2)0.008 (3)0.006 (2)
C20.076 (4)0.052 (3)0.065 (4)0.010 (3)0.004 (3)−0.005 (3)
C30.091 (5)0.075 (4)0.075 (4)0.031 (4)0.012 (4)0.015 (3)
C40.104 (6)0.040 (4)0.117 (6)0.014 (4)0.045 (5)0.002 (4)
C50.112 (6)0.049 (4)0.094 (5)−0.015 (4)0.025 (4)−0.026 (3)
C60.068 (4)0.052 (3)0.068 (3)−0.003 (3)0.006 (3)−0.004 (3)
C70.059 (3)0.036 (3)0.067 (3)−0.008 (2)0.004 (3)0.004 (3)
C80.075 (4)0.035 (3)0.060 (3)−0.005 (3)0.007 (3)0.013 (2)
C90.054 (3)0.042 (3)0.041 (3)−0.005 (3)0.004 (2)0.005 (2)
C100.040 (3)0.038 (3)0.032 (2)−0.002 (2)−0.002 (2)−0.002 (2)
C110.042 (3)0.032 (3)0.039 (2)0.000 (2)0.000 (2)0.002 (2)
C120.054 (3)0.036 (3)0.039 (2)−0.004 (2)0.004 (2)0.001 (2)
C130.037 (3)0.039 (3)0.031 (2)0.001 (2)0.006 (2)−0.001 (2)
C140.036 (3)0.027 (2)0.040 (2)−0.004 (2)0.003 (2)0.000 (2)
C150.036 (3)0.078 (4)0.042 (3)−0.006 (2)0.008 (2)−0.001 (3)
C160.052 (3)0.077 (4)0.036 (3)−0.007 (3)0.006 (3)0.000 (2)
C170.034 (3)0.042 (3)0.051 (3)−0.006 (2)−0.012 (2)−0.004 (2)
C180.039 (3)0.065 (3)0.046 (3)−0.004 (2)0.010 (2)−0.002 (3)
C190.044 (3)0.054 (3)0.039 (2)−0.001 (2)0.009 (2)0.002 (2)
C200.042 (3)0.038 (3)0.035 (2)−0.002 (2)−0.003 (2)0.001 (2)
C210.050 (3)0.040 (3)0.052 (3)0.005 (3)−0.002 (3)−0.007 (2)
C220.068 (4)0.032 (3)0.075 (4)−0.003 (3)−0.001 (3)−0.008 (3)
C230.066 (3)0.034 (3)0.065 (3)−0.002 (2)0.017 (3)−0.007 (2)
C240.045 (3)0.032 (3)0.056 (3)0.001 (2)0.004 (3)0.005 (2)
C250.042 (3)0.034 (3)0.045 (3)−0.008 (2)−0.002 (2)−0.003 (2)
C260.052 (3)0.034 (3)0.068 (3)−0.008 (2)0.005 (3)0.001 (3)
C270.108 (5)0.055 (4)0.130 (5)−0.026 (3)0.058 (4)−0.027 (4)
C280.108 (6)0.051 (4)0.174 (7)−0.030 (4)0.046 (5)−0.021 (4)
C290.105 (5)0.041 (4)0.115 (5)−0.022 (3)0.004 (4)0.014 (4)
C300.160 (7)0.075 (5)0.077 (4)−0.048 (4)0.013 (4)0.017 (4)
C310.128 (6)0.056 (4)0.065 (4)−0.048 (3)−0.007 (4)−0.003 (3)
Cl10.0482 (8)0.0933 (10)0.0634 (8)−0.0105 (7)−0.0103 (7)0.0026 (7)
O10.049 (2)0.0275 (16)0.0534 (18)−0.0016 (14)0.0189 (15)0.0001 (14)
O20.068 (2)0.054 (2)0.083 (2)0.0053 (18)0.035 (2)0.0194 (18)
O30.061 (2)0.052 (2)0.079 (2)0.0029 (17)0.025 (2)−0.0183 (17)
C1—C21.373 (6)C16—C171.355 (5)
C1—C61.387 (6)C16—H16A0.9300
C1—C71.507 (5)C17—C181.367 (5)
C2—C31.364 (6)C17—Cl11.757 (4)
C2—H2A0.9300C18—C191.359 (5)
C3—C41.376 (7)C18—H18A0.9300
C3—H3A0.9300C19—H19A0.9300
C4—C51.353 (7)C20—C251.333 (5)
C4—H4A0.9300C20—C211.455 (5)
C5—C61.387 (6)C21—O31.221 (4)
C5—H5A0.9300C21—C221.511 (6)
C6—H6A0.9300C22—C231.484 (5)
C7—C81.470 (5)C22—H22A0.9700
C7—C121.520 (5)C22—H22B0.9700
C7—H7A0.9800C23—C261.520 (5)
C8—C91.523 (5)C23—C241.525 (5)
C8—H8A0.9700C23—H23A0.9800
C8—H8B0.9700C24—C251.491 (5)
C9—O21.208 (4)C24—H24A0.9700
C9—C101.461 (5)C24—H24B0.9700
C10—C111.327 (5)C25—O11.377 (4)
C10—C131.504 (5)C26—C271.367 (6)
C11—O11.384 (4)C26—C311.369 (6)
C11—C121.499 (5)C27—C281.390 (7)
C12—H12A0.9700C27—H27A0.9300
C12—H12B0.9700C28—C291.320 (7)
C13—C201.506 (5)C28—H28A0.9300
C13—C141.534 (5)C29—C301.359 (7)
C13—H13A0.9800C29—H29A0.9300
C14—C191.379 (5)C30—C311.398 (6)
C14—C151.378 (5)C30—H30A0.9300
C15—C161.370 (5)C31—H31A0.9300
C15—H15A0.9300
C2—C1—C6118.2 (4)C17—C16—H16A120.4
C2—C1—C7122.6 (4)C15—C16—H16A120.4
C6—C1—C7119.1 (4)C16—C17—C18121.0 (4)
C3—C2—C1122.6 (5)C16—C17—Cl1119.0 (3)
C3—C2—H2A118.7C18—C17—Cl1120.0 (4)
C1—C2—H2A118.7C19—C18—C17119.3 (4)
C2—C3—C4118.8 (6)C19—C18—H18A120.4
C2—C3—H3A120.6C17—C18—H18A120.4
C4—C3—H3A120.6C18—C19—C14121.5 (4)
C5—C4—C3119.9 (6)C18—C19—H19A119.3
C5—C4—H4A120.1C14—C19—H19A119.3
C3—C4—H4A120.1C25—C20—C21119.1 (4)
C4—C5—C6121.6 (6)C25—C20—C13122.0 (4)
C4—C5—H5A119.2C21—C20—C13118.7 (4)
C6—C5—H5A119.2O3—C21—C20121.2 (4)
C5—C6—C1118.9 (5)O3—C21—C22121.6 (4)
C5—C6—H6A120.5C20—C21—C22117.2 (4)
C1—C6—H6A120.5C23—C22—C21114.2 (4)
C8—C7—C1112.2 (4)C23—C22—H22A108.7
C8—C7—C12110.6 (3)C21—C22—H22A108.7
C1—C7—C12115.0 (4)C23—C22—H22B108.7
C8—C7—H7A106.1C21—C22—H22B108.7
C1—C7—H7A106.1H22A—C22—H22B107.6
C12—C7—H7A106.1C22—C23—C26114.6 (4)
C7—C8—C9113.0 (4)C22—C23—C24110.1 (4)
C7—C8—H8A109.0C26—C23—C24113.8 (4)
C9—C8—H8A109.0C22—C23—H23A105.8
C7—C8—H8B109.0C26—C23—H23A105.8
C9—C8—H8B109.0C24—C23—H23A105.8
H8A—C8—H8B107.8C25—C24—C23110.0 (4)
O2—C9—C10120.9 (4)C25—C24—H24A109.7
O2—C9—C8123.1 (4)C23—C24—H24A109.7
C10—C9—C8115.9 (4)C25—C24—H24B109.7
C11—C10—C9118.9 (4)C23—C24—H24B109.7
C11—C10—C13122.0 (4)H24A—C24—H24B108.2
C9—C10—C13119.1 (4)C20—C25—O1122.8 (4)
C10—C11—O1122.8 (4)C20—C25—C24125.7 (4)
C10—C11—C12126.6 (4)O1—C25—C24111.4 (4)
O1—C11—C12110.6 (3)C27—C26—C31116.1 (4)
C11—C12—C7110.0 (4)C27—C26—C23123.8 (5)
C11—C12—H12A109.7C31—C26—C23120.0 (4)
C7—C12—H12A109.7C26—C27—C28121.3 (5)
C11—C12—H12B109.7C26—C27—H27A119.4
C7—C12—H12B109.7C28—C27—H27A119.4
H12A—C12—H12B108.2C29—C28—C27121.5 (6)
C10—C13—C20108.3 (3)C29—C28—H28A119.2
C10—C13—C14109.2 (3)C27—C28—H28A119.2
C20—C13—C14112.5 (3)C28—C29—C30119.5 (6)
C10—C13—H13A108.9C28—C29—H29A120.2
C20—C13—H13A108.9C30—C29—H29A120.2
C14—C13—H13A108.9C29—C30—C31119.2 (6)
C19—C14—C15117.7 (4)C29—C30—H30A120.4
C19—C14—C13122.5 (4)C31—C30—H30A120.4
C15—C14—C13119.8 (4)C26—C31—C30122.2 (5)
C16—C15—C14121.3 (4)C26—C31—H31A118.9
C16—C15—H15A119.3C30—C31—H31A118.9
C14—C15—H15A119.3C25—O1—C11116.9 (3)
C17—C16—C15119.2 (4)
C6—C1—C2—C31.1 (7)C16—C17—C18—C191.1 (6)
C7—C1—C2—C3−175.7 (4)Cl1—C17—C18—C19180.0 (3)
C1—C2—C3—C40.0 (8)C17—C18—C19—C140.9 (6)
C2—C3—C4—C5−1.3 (9)C15—C14—C19—C18−1.4 (6)
C3—C4—C5—C61.4 (9)C13—C14—C19—C18177.1 (4)
C4—C5—C6—C1−0.3 (8)C10—C13—C20—C25−19.7 (5)
C2—C1—C6—C5−1.0 (7)C14—C13—C20—C25101.1 (4)
C7—C1—C6—C5176.0 (4)C10—C13—C20—C21156.3 (3)
C2—C1—C7—C863.1 (6)C14—C13—C20—C21−83.0 (4)
C6—C1—C7—C8−113.8 (5)C25—C20—C21—O3171.2 (4)
C2—C1—C7—C12−64.5 (6)C13—C20—C21—O3−4.9 (6)
C6—C1—C7—C12118.7 (4)C25—C20—C21—C22−6.3 (6)
C1—C7—C8—C9172.4 (4)C13—C20—C21—C22177.6 (3)
C12—C7—C8—C9−57.8 (5)O3—C21—C22—C23156.9 (4)
C7—C8—C9—O2−147.2 (4)C20—C21—C22—C23−25.6 (6)
C7—C8—C9—C1034.6 (5)C21—C22—C23—C26−176.6 (4)
O2—C9—C10—C11−178.8 (4)C21—C22—C23—C2453.5 (5)
C8—C9—C10—C11−0.6 (6)C22—C23—C24—C25−49.5 (5)
O2—C9—C10—C132.2 (6)C26—C23—C24—C25−179.9 (4)
C8—C9—C10—C13−179.6 (3)C21—C20—C25—O1−173.4 (3)
C9—C10—C11—O1172.2 (3)C13—C20—C25—O12.5 (6)
C13—C10—C11—O1−8.9 (6)C21—C20—C25—C248.7 (6)
C9—C10—C11—C12−9.6 (6)C13—C20—C25—C24−175.4 (4)
C13—C10—C11—C12169.4 (4)C23—C24—C25—C2020.0 (6)
C10—C11—C12—C7−13.8 (6)C23—C24—C25—O1−158.1 (3)
O1—C11—C12—C7164.6 (3)C22—C23—C26—C276.2 (7)
C8—C7—C12—C1146.5 (5)C24—C23—C26—C27134.2 (5)
C1—C7—C12—C11174.9 (4)C22—C23—C26—C31−177.4 (5)
C11—C10—C13—C2022.8 (5)C24—C23—C26—C31−49.4 (6)
C9—C10—C13—C20−158.3 (3)C31—C26—C27—C28−3.0 (9)
C11—C10—C13—C14−100.0 (4)C23—C26—C27—C28173.5 (5)
C9—C10—C13—C1478.9 (4)C26—C27—C28—C291.3 (11)
C10—C13—C14—C19−113.0 (4)C27—C28—C29—C302.5 (11)
C20—C13—C14—C19126.8 (4)C28—C29—C30—C31−4.2 (10)
C10—C13—C14—C1565.4 (5)C27—C26—C31—C301.2 (8)
C20—C13—C14—C15−54.8 (5)C23—C26—C31—C30−175.4 (5)
C19—C14—C15—C160.0 (6)C29—C30—C31—C262.4 (9)
C13—C14—C15—C16−178.5 (4)C20—C25—O1—C1114.2 (5)
C14—C15—C16—C171.9 (7)C24—C25—O1—C11−167.6 (3)
C15—C16—C17—C18−2.5 (7)C10—C11—O1—C25−11.0 (5)
C15—C16—C17—Cl1178.6 (3)C12—C11—O1—C25170.5 (3)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Application of a pH-sensitive fluoroprobe (C-SNARF-4) for pH microenvironment analysis in Pseudomonas aeruginosa biofilms.

Authors:  Ryan C Hunter; Terry J Beveridge
Journal:  Appl Environ Microbiol       Date:  2005-05       Impact factor: 4.792

3.  The incorporation of various porphyrins into blood cells measured via flow cytometry, absorption and emission spectroscopy.

Authors:  R M Ion; A Planner; K Wiktorowicz; D Frackowiak
Journal:  Acta Biochim Pol       Date:  1998       Impact factor: 2.149

  3 in total

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