| Literature DB >> 21579243 |
Aixia Feng1, Ying Xu, Xuehong Wei.
Abstract
The asymmetric unit of the title compound, C(12)H(10)N(4)O(2)Se(2)·2C(3)H(7)NO, contains two solvent mol-ecules and two half mol-ecules of the dinicotinamide, each of which sits on a center of symmetry passing through the middle of the Se-Se bond. In each mol-ecule, the two pyridyl groups and diseleno group are approximately coplanar (r.m.s. deviations from planarity for all non-H atoms = 0.011 and 0.008 Å in the two mol-ecules). Inter-molecular N-H⋯O hydrogen bonds stablilize the crystal packing.Entities:
Year: 2010 PMID: 21579243 PMCID: PMC2979017 DOI: 10.1107/S1600536810015047
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H10N4O2Se2·2C3H7NO | |
| Triclinic, | |
| Mo | |
| Cell parameters from 2815 reflections | |
| θ = 3.1–27.5° | |
| α = 114.175 (2)° | µ = 3.28 mm−1 |
| β = 91.017 (3)° | |
| γ = 95.833 (3)° | Block, yellow |
| 0.30 × 0.20 × 0.20 mm |
| Siemens SMART CCD diffractometer | 3937 independent reflections |
| Radiation source: fine-focus sealed tube | 3359 reflections with |
| graphite | |
| phi and ω scans | θmax = 25.0°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 3937 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3937 reflections | (Δ/σ)max = 0.001 |
| 275 parameters | Δρmax = 0.38 e Å−3 |
| 0 restraints | Δρmin = −0.73 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| Se1 | 0.44747 (5) | 0.90079 (3) | 0.43528 (3) | 0.04343 (13) | |
| Se2 | −0.00660 (5) | 0.90803 (3) | 0.92023 (2) | 0.04228 (13) | |
| N1 | 0.1532 (5) | 0.5410 (3) | 0.7795 (2) | 0.0635 (10) | |
| H1A | 0.1427 | 0.5036 | 0.7093 | 0.076* | |
| H1B | 0.2126 | 0.5139 | 0.8176 | 0.076* | |
| N2 | 0.0893 (4) | 0.8848 (2) | 1.1107 (2) | 0.0425 (7) | |
| N3 | 0.2600 (5) | 0.5278 (3) | 0.3920 (3) | 0.0592 (9) | |
| H3A | 0.2117 | 0.4794 | 0.3289 | 0.071* | |
| H3B | 0.2580 | 0.5066 | 0.4457 | 0.071* | |
| N4 | 0.5588 (4) | 0.9107 (3) | 0.6373 (2) | 0.0486 (7) | |
| N5 | 0.3752 (5) | 0.2618 (4) | 0.9343 (3) | 0.0708 (10) | |
| N6 | 0.0494 (5) | 0.2208 (3) | 0.4807 (2) | 0.0551 (8) | |
| O1 | −0.0074 (4) | 0.6808 (2) | 0.77632 (19) | 0.0673 (9) | |
| O2 | 0.3436 (5) | 0.6689 (2) | 0.3326 (2) | 0.0745 (9) | |
| O3 | 0.3116 (6) | 0.4039 (4) | 0.8778 (3) | 0.1119 (15) | |
| O4 | 0.1655 (4) | 0.4149 (2) | 0.5403 (2) | 0.0636 (8) | |
| C1 | 0.0787 (5) | 0.6393 (3) | 0.8283 (3) | 0.0453 (8) | |
| C2 | 0.0992 (4) | 0.7021 (3) | 0.9497 (2) | 0.0385 (7) | |
| C3 | 0.1484 (5) | 0.6470 (3) | 1.0157 (3) | 0.0444 (8) | |
| H3 | 0.1689 | 0.5671 | 0.9840 | 0.053* | |
| C4 | 0.1672 (5) | 0.7094 (3) | 1.1279 (3) | 0.0501 (9) | |
| H4 | 0.1983 | 0.6727 | 1.1728 | 0.060* | |
| C5 | 0.1388 (5) | 0.8271 (3) | 1.1708 (3) | 0.0481 (9) | |
| H5 | 0.1547 | 0.8700 | 1.2463 | 0.058* | |
| C6 | 0.0676 (4) | 0.8226 (3) | 1.0022 (2) | 0.0359 (7) | |
| C7 | 0.3379 (5) | 0.6354 (3) | 0.4068 (3) | 0.0485 (9) | |
| C8 | 0.4199 (5) | 0.7156 (3) | 0.5172 (3) | 0.0415 (8) | |
| C9 | 0.4458 (6) | 0.6768 (3) | 0.5990 (3) | 0.0555 (10) | |
| H9 | 0.4074 | 0.5980 | 0.5869 | 0.067* | |
| C10 | 0.5283 (6) | 0.7548 (4) | 0.6982 (3) | 0.0649 (12) | |
| H10 | 0.5460 | 0.7299 | 0.7539 | 0.078* | |
| C11 | 0.5836 (6) | 0.8695 (4) | 0.7131 (3) | 0.0597 (11) | |
| H11 | 0.6417 | 0.9216 | 0.7797 | 0.072* | |
| C12 | 0.4806 (4) | 0.8354 (3) | 0.5408 (3) | 0.0382 (7) | |
| C13 | 0.4094 (8) | 0.1434 (5) | 0.9066 (7) | 0.132 (3) | |
| H13A | 0.3984 | 0.0998 | 0.8285 | 0.198* | |
| H13B | 0.3259 | 0.1059 | 0.9390 | 0.198* | |
| H13C | 0.5273 | 0.1436 | 0.9334 | 0.198* | |
| C14 | 0.3803 (8) | 0.3421 (6) | 1.0492 (5) | 0.1017 (18) | |
| H14A | 0.3586 | 0.4203 | 1.0564 | 0.153* | |
| H14B | 0.4947 | 0.3471 | 1.0833 | 0.153* | |
| H14C | 0.2910 | 0.3120 | 1.0842 | 0.153* | |
| C15 | 0.3437 (7) | 0.3039 (5) | 0.8611 (4) | 0.0867 (15) | |
| H15 | 0.3463 | 0.2508 | 0.7882 | 0.104* | |
| C16 | −0.0269 (7) | 0.1122 (4) | 0.3893 (4) | 0.0864 (16) | |
| H16A | −0.0493 | 0.1295 | 0.3270 | 0.130* | |
| H16B | −0.1361 | 0.0820 | 0.4089 | 0.130* | |
| H16C | 0.0541 | 0.0530 | 0.3715 | 0.130* | |
| C17 | 0.0853 (7) | 0.2161 (4) | 0.5860 (4) | 0.0791 (14) | |
| H17A | 0.1766 | 0.2791 | 0.6280 | 0.119* | |
| H17B | 0.1233 | 0.1400 | 0.5741 | 0.119* | |
| H17C | −0.0205 | 0.2260 | 0.6252 | 0.119* | |
| C18 | 0.0939 (6) | 0.3203 (4) | 0.4690 (3) | 0.0571 (10) | |
| H18 | 0.0690 | 0.3193 | 0.4005 | 0.069* |
| Se1 | 0.0546 (2) | 0.0391 (2) | 0.0405 (2) | −0.00010 (15) | −0.00515 (15) | 0.02201 (17) |
| Se2 | 0.0608 (2) | 0.0352 (2) | 0.02975 (19) | 0.00734 (15) | −0.00560 (15) | 0.01226 (15) |
| N1 | 0.103 (3) | 0.051 (2) | 0.0322 (15) | 0.0285 (19) | −0.0013 (16) | 0.0088 (14) |
| N2 | 0.0567 (18) | 0.0399 (16) | 0.0296 (14) | 0.0083 (13) | −0.0010 (12) | 0.0127 (12) |
| N3 | 0.084 (2) | 0.0411 (18) | 0.0469 (17) | −0.0106 (16) | −0.0191 (16) | 0.0181 (15) |
| N4 | 0.062 (2) | 0.0385 (16) | 0.0464 (17) | −0.0001 (14) | −0.0092 (14) | 0.0207 (14) |
| N5 | 0.062 (2) | 0.079 (3) | 0.081 (3) | 0.0151 (19) | 0.0075 (19) | 0.041 (2) |
| N6 | 0.074 (2) | 0.0438 (18) | 0.0476 (18) | 0.0091 (15) | 0.0171 (16) | 0.0181 (15) |
| O1 | 0.113 (2) | 0.0510 (16) | 0.0310 (12) | 0.0239 (16) | −0.0190 (14) | 0.0072 (12) |
| O2 | 0.125 (3) | 0.0538 (17) | 0.0457 (15) | −0.0128 (17) | −0.0233 (16) | 0.0281 (14) |
| O3 | 0.153 (4) | 0.094 (3) | 0.108 (3) | 0.067 (3) | 0.014 (3) | 0.049 (2) |
| O4 | 0.097 (2) | 0.0467 (16) | 0.0417 (14) | −0.0024 (14) | 0.0025 (14) | 0.0150 (13) |
| C1 | 0.067 (2) | 0.0349 (18) | 0.0308 (16) | 0.0060 (16) | −0.0036 (16) | 0.0105 (14) |
| C2 | 0.0447 (19) | 0.0359 (18) | 0.0297 (16) | 0.0021 (14) | −0.0026 (13) | 0.0090 (14) |
| C3 | 0.057 (2) | 0.0401 (19) | 0.0380 (18) | 0.0119 (16) | 0.0013 (15) | 0.0168 (15) |
| C4 | 0.067 (2) | 0.053 (2) | 0.0384 (18) | 0.0134 (18) | 0.0000 (17) | 0.0252 (17) |
| C5 | 0.065 (2) | 0.050 (2) | 0.0280 (16) | 0.0102 (17) | 0.0010 (15) | 0.0142 (16) |
| C6 | 0.0424 (18) | 0.0341 (17) | 0.0315 (16) | 0.0016 (13) | −0.0021 (13) | 0.0148 (14) |
| C7 | 0.060 (2) | 0.041 (2) | 0.0445 (19) | 0.0041 (16) | −0.0108 (16) | 0.0180 (16) |
| C8 | 0.048 (2) | 0.0393 (18) | 0.0399 (18) | 0.0020 (15) | −0.0030 (15) | 0.0198 (15) |
| C9 | 0.080 (3) | 0.040 (2) | 0.051 (2) | −0.0009 (18) | −0.0083 (19) | 0.0255 (18) |
| C10 | 0.101 (3) | 0.052 (2) | 0.046 (2) | −0.004 (2) | −0.019 (2) | 0.0288 (19) |
| C11 | 0.081 (3) | 0.052 (2) | 0.044 (2) | −0.001 (2) | −0.0196 (19) | 0.0210 (19) |
| C12 | 0.0416 (18) | 0.0377 (18) | 0.0389 (17) | 0.0032 (14) | −0.0027 (14) | 0.0200 (15) |
| C13 | 0.086 (4) | 0.098 (5) | 0.256 (9) | 0.029 (3) | 0.059 (5) | 0.112 (6) |
| C14 | 0.077 (4) | 0.134 (5) | 0.101 (4) | −0.006 (3) | 0.000 (3) | 0.061 (4) |
| C15 | 0.088 (4) | 0.097 (4) | 0.076 (3) | 0.030 (3) | 0.008 (3) | 0.033 (3) |
| C16 | 0.102 (4) | 0.050 (3) | 0.081 (3) | −0.009 (2) | 0.031 (3) | 0.004 (2) |
| C17 | 0.089 (4) | 0.091 (4) | 0.086 (3) | 0.016 (3) | 0.012 (3) | 0.064 (3) |
| C18 | 0.080 (3) | 0.055 (2) | 0.0370 (19) | 0.007 (2) | 0.0086 (18) | 0.0202 (19) |
| Se1—C12 | 1.918 (3) | C3—C4 | 1.379 (5) |
| Se1—Se1i | 2.3889 (8) | C3—H3 | 0.9300 |
| Se2—C6 | 1.919 (3) | C4—C5 | 1.365 (5) |
| Se2—Se2ii | 2.3877 (7) | C4—H4 | 0.9300 |
| N1—C1 | 1.312 (4) | C5—H5 | 0.9300 |
| N1—H1A | 0.8600 | C7—C8 | 1.484 (5) |
| N1—H1B | 0.8600 | C8—C9 | 1.383 (5) |
| N2—C6 | 1.336 (4) | C8—C12 | 1.403 (5) |
| N2—C5 | 1.346 (4) | C9—C10 | 1.375 (5) |
| N3—C7 | 1.330 (5) | C9—H9 | 0.9300 |
| N3—H3A | 0.8600 | C10—C11 | 1.363 (5) |
| N3—H3B | 0.8600 | C10—H10 | 0.9300 |
| N4—C11 | 1.328 (5) | C11—H11 | 0.9300 |
| N4—C12 | 1.330 (4) | C13—H13A | 0.9600 |
| N5—C15 | 1.313 (6) | C13—H13B | 0.9600 |
| N5—C13 | 1.403 (6) | C13—H13C | 0.9600 |
| N5—C14 | 1.449 (7) | C14—H14A | 0.9600 |
| N6—C18 | 1.311 (5) | C14—H14B | 0.9600 |
| N6—C16 | 1.451 (5) | C14—H14C | 0.9600 |
| N6—C17 | 1.460 (5) | C15—H15 | 0.9300 |
| O1—C1 | 1.233 (4) | C16—H16A | 0.9600 |
| O2—C7 | 1.224 (4) | C16—H16B | 0.9600 |
| O3—C15 | 1.210 (6) | C16—H16C | 0.9600 |
| O4—C18 | 1.229 (5) | C17—H17A | 0.9600 |
| C1—C2 | 1.487 (4) | C17—H17B | 0.9600 |
| C2—C3 | 1.385 (4) | C17—H17C | 0.9600 |
| C2—C6 | 1.406 (4) | C18—H18 | 0.9300 |
| C12—Se1—Se1i | 92.21 (10) | C10—C9—H9 | 120.1 |
| C6—Se2—Se2ii | 92.67 (9) | C8—C9—H9 | 120.1 |
| C1—N1—H1A | 120.0 | C11—C10—C9 | 118.6 (3) |
| C1—N1—H1B | 120.0 | C11—C10—H10 | 120.7 |
| H1A—N1—H1B | 120.0 | C9—C10—H10 | 120.7 |
| C6—N2—C5 | 117.6 (3) | N4—C11—C10 | 123.3 (4) |
| C7—N3—H3A | 120.0 | N4—C11—H11 | 118.3 |
| C7—N3—H3B | 120.0 | C10—C11—H11 | 118.3 |
| H3A—N3—H3B | 120.0 | N4—C12—C8 | 122.6 (3) |
| C11—N4—C12 | 118.4 (3) | N4—C12—Se1 | 116.3 (2) |
| C15—N5—C13 | 123.2 (5) | C8—C12—Se1 | 121.1 (2) |
| C15—N5—C14 | 118.6 (5) | N5—C13—H13A | 109.5 |
| C13—N5—C14 | 118.2 (5) | N5—C13—H13B | 109.5 |
| C18—N6—C16 | 121.4 (4) | H13A—C13—H13B | 109.5 |
| C18—N6—C17 | 119.9 (4) | N5—C13—H13C | 109.5 |
| C16—N6—C17 | 118.6 (4) | H13A—C13—H13C | 109.5 |
| O1—C1—N1 | 121.8 (3) | H13B—C13—H13C | 109.5 |
| O1—C1—C2 | 119.4 (3) | N5—C14—H14A | 109.5 |
| N1—C1—C2 | 118.8 (3) | N5—C14—H14B | 109.5 |
| C3—C2—C6 | 117.2 (3) | H14A—C14—H14B | 109.5 |
| C3—C2—C1 | 122.8 (3) | N5—C14—H14C | 109.5 |
| C6—C2—C1 | 120.0 (3) | H14A—C14—H14C | 109.5 |
| C4—C3—C2 | 120.6 (3) | H14B—C14—H14C | 109.5 |
| C4—C3—H3 | 119.7 | O3—C15—N5 | 127.4 (5) |
| C2—C3—H3 | 119.7 | O3—C15—H15 | 116.3 |
| C5—C4—C3 | 117.8 (3) | N5—C15—H15 | 116.3 |
| C5—C4—H4 | 121.1 | N6—C16—H16A | 109.5 |
| C3—C4—H4 | 121.1 | N6—C16—H16B | 109.5 |
| N2—C5—C4 | 124.0 (3) | H16A—C16—H16B | 109.5 |
| N2—C5—H5 | 118.0 | N6—C16—H16C | 109.5 |
| C4—C5—H5 | 118.0 | H16A—C16—H16C | 109.5 |
| N2—C6—C2 | 122.7 (3) | H16B—C16—H16C | 109.5 |
| N2—C6—Se2 | 116.1 (2) | N6—C17—H17A | 109.5 |
| C2—C6—Se2 | 121.2 (2) | N6—C17—H17B | 109.5 |
| O2—C7—N3 | 122.0 (3) | H17A—C17—H17B | 109.5 |
| O2—C7—C8 | 120.0 (3) | N6—C17—H17C | 109.5 |
| N3—C7—C8 | 118.0 (3) | H17A—C17—H17C | 109.5 |
| C9—C8—C12 | 117.2 (3) | H17B—C17—H17C | 109.5 |
| C9—C8—C7 | 123.0 (3) | O4—C18—N6 | 125.9 (4) |
| C12—C8—C7 | 119.8 (3) | O4—C18—H18 | 117.0 |
| C10—C9—C8 | 119.9 (3) | N6—C18—H18 | 117.0 |
| H··· | ||||
| N1—H1A···O4 | 0.86 | 2.09 | 2.946 (4) | 170 |
| N1—H1B···O3 | 0.86 | 2.03 | 2.869 (5) | 163 |
| N3—H3B···O4 | 0.86 | 2.10 | 2.919 (4) | 158 |
| N3—H3A···O1iii | 0.86 | 2.31 | 3.081 (4) | 150 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.09 | 2.946 (4) | 170 |
| N1—H1 | 0.86 | 2.03 | 2.869 (5) | 163 |
| N3—H3 | 0.86 | 2.10 | 2.919 (4) | 158 |
| N3—H3 | 0.86 | 2.31 | 3.081 (4) | 150 |
Symmetry code: (i) .