Literature DB >> 21579243

2,2'-(Diselane-1,2-di-yl)dinicotinamide N,N'-dimethyl-formamide disolvate.

Aixia Feng1, Ying Xu, Xuehong Wei.   

Abstract

The asymmetric unit of the title compound, C(12)H(10)N(4)O(2)Se(2)·2C(3)H(7)NO, contains two solvent mol-ecules and two half mol-ecules of the dinicotinamide, each of which sits on a center of symmetry passing through the middle of the Se-Se bond. In each mol-ecule, the two pyridyl groups and diseleno group are approximately coplanar (r.m.s. deviations from planarity for all non-H atoms = 0.011 and 0.008 Å in the two mol-ecules). Inter-molecular N-H⋯O hydrogen bonds stablilize the crystal packing.

Entities:  

Year:  2010        PMID: 21579243      PMCID: PMC2979017          DOI: 10.1107/S1600536810015047

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the potential applications of organoselenium compounds in organic synthesis, as precursors for semiconducting materials and in ligand chemistry and biochemistry, see: Mugesh et al. (2001 ▶). For related diselenide compounds, see: Bhasin & Singh (2002 ▶); Kienitz et al. (1996 ▶).

Experimental

Crystal data

C12H10N4O2Se2·2C3H7NO M = 546.34 Triclinic, a = 7.6101 (17) Å b = 12.318 (3) Å c = 13.420 (3) Å α = 114.175 (2)° β = 91.017 (3)° γ = 95.833 (3)° V = 1139.3 (4) Å3 Z = 2 Mo Kα radiation μ = 3.28 mm−1 T = 298 K 0.30 × 0.20 × 0.20 mm

Data collection

Siemens SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.439, T max = 0.560 3937 measured reflections 3937 independent reflections 3359 reflections with I > 2σ(I)

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.097 S = 1.03 3937 reflections 275 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.73 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810015047/fl2299sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810015047/fl2299Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N4O2Se2·2C3H7NOZ = 2
Mr = 546.34F(000) = 548
Triclinic, P1Dx = 1.593 Mg m3
a = 7.6101 (17) ÅMo Kα radiation, λ = 0.71073 Å
b = 12.318 (3) ÅCell parameters from 2815 reflections
c = 13.420 (3) Åθ = 3.1–27.5°
α = 114.175 (2)°µ = 3.28 mm1
β = 91.017 (3)°T = 298 K
γ = 95.833 (3)°Block, yellow
V = 1139.3 (4) Å30.30 × 0.20 × 0.20 mm
Siemens SMART CCD diffractometer3937 independent reflections
Radiation source: fine-focus sealed tube3359 reflections with I > 2σ(I)
graphiteRint = 0.0000
phi and ω scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→8
Tmin = 0.439, Tmax = 0.560k = −14→13
3937 measured reflectionsl = 0→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0416P)2 + 0.7097P] where P = (Fo2 + 2Fc2)/3
3937 reflections(Δ/σ)max = 0.001
275 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.73 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Se10.44747 (5)0.90079 (3)0.43528 (3)0.04343 (13)
Se2−0.00660 (5)0.90803 (3)0.92023 (2)0.04228 (13)
N10.1532 (5)0.5410 (3)0.7795 (2)0.0635 (10)
H1A0.14270.50360.70930.076*
H1B0.21260.51390.81760.076*
N20.0893 (4)0.8848 (2)1.1107 (2)0.0425 (7)
N30.2600 (5)0.5278 (3)0.3920 (3)0.0592 (9)
H3A0.21170.47940.32890.071*
H3B0.25800.50660.44570.071*
N40.5588 (4)0.9107 (3)0.6373 (2)0.0486 (7)
N50.3752 (5)0.2618 (4)0.9343 (3)0.0708 (10)
N60.0494 (5)0.2208 (3)0.4807 (2)0.0551 (8)
O1−0.0074 (4)0.6808 (2)0.77632 (19)0.0673 (9)
O20.3436 (5)0.6689 (2)0.3326 (2)0.0745 (9)
O30.3116 (6)0.4039 (4)0.8778 (3)0.1119 (15)
O40.1655 (4)0.4149 (2)0.5403 (2)0.0636 (8)
C10.0787 (5)0.6393 (3)0.8283 (3)0.0453 (8)
C20.0992 (4)0.7021 (3)0.9497 (2)0.0385 (7)
C30.1484 (5)0.6470 (3)1.0157 (3)0.0444 (8)
H30.16890.56710.98400.053*
C40.1672 (5)0.7094 (3)1.1279 (3)0.0501 (9)
H40.19830.67271.17280.060*
C50.1388 (5)0.8271 (3)1.1708 (3)0.0481 (9)
H50.15470.87001.24630.058*
C60.0676 (4)0.8226 (3)1.0022 (2)0.0359 (7)
C70.3379 (5)0.6354 (3)0.4068 (3)0.0485 (9)
C80.4199 (5)0.7156 (3)0.5172 (3)0.0415 (8)
C90.4458 (6)0.6768 (3)0.5990 (3)0.0555 (10)
H90.40740.59800.58690.067*
C100.5283 (6)0.7548 (4)0.6982 (3)0.0649 (12)
H100.54600.72990.75390.078*
C110.5836 (6)0.8695 (4)0.7131 (3)0.0597 (11)
H110.64170.92160.77970.072*
C120.4806 (4)0.8354 (3)0.5408 (3)0.0382 (7)
C130.4094 (8)0.1434 (5)0.9066 (7)0.132 (3)
H13A0.39840.09980.82850.198*
H13B0.32590.10590.93900.198*
H13C0.52730.14360.93340.198*
C140.3803 (8)0.3421 (6)1.0492 (5)0.1017 (18)
H14A0.35860.42031.05640.153*
H14B0.49470.34711.08330.153*
H14C0.29100.31201.08420.153*
C150.3437 (7)0.3039 (5)0.8611 (4)0.0867 (15)
H150.34630.25080.78820.104*
C16−0.0269 (7)0.1122 (4)0.3893 (4)0.0864 (16)
H16A−0.04930.12950.32700.130*
H16B−0.13610.08200.40890.130*
H16C0.05410.05300.37150.130*
C170.0853 (7)0.2161 (4)0.5860 (4)0.0791 (14)
H17A0.17660.27910.62800.119*
H17B0.12330.14000.57410.119*
H17C−0.02050.22600.62520.119*
C180.0939 (6)0.3203 (4)0.4690 (3)0.0571 (10)
H180.06900.31930.40050.069*
U11U22U33U12U13U23
Se10.0546 (2)0.0391 (2)0.0405 (2)−0.00010 (15)−0.00515 (15)0.02201 (17)
Se20.0608 (2)0.0352 (2)0.02975 (19)0.00734 (15)−0.00560 (15)0.01226 (15)
N10.103 (3)0.051 (2)0.0322 (15)0.0285 (19)−0.0013 (16)0.0088 (14)
N20.0567 (18)0.0399 (16)0.0296 (14)0.0083 (13)−0.0010 (12)0.0127 (12)
N30.084 (2)0.0411 (18)0.0469 (17)−0.0106 (16)−0.0191 (16)0.0181 (15)
N40.062 (2)0.0385 (16)0.0464 (17)−0.0001 (14)−0.0092 (14)0.0207 (14)
N50.062 (2)0.079 (3)0.081 (3)0.0151 (19)0.0075 (19)0.041 (2)
N60.074 (2)0.0438 (18)0.0476 (18)0.0091 (15)0.0171 (16)0.0181 (15)
O10.113 (2)0.0510 (16)0.0310 (12)0.0239 (16)−0.0190 (14)0.0072 (12)
O20.125 (3)0.0538 (17)0.0457 (15)−0.0128 (17)−0.0233 (16)0.0281 (14)
O30.153 (4)0.094 (3)0.108 (3)0.067 (3)0.014 (3)0.049 (2)
O40.097 (2)0.0467 (16)0.0417 (14)−0.0024 (14)0.0025 (14)0.0150 (13)
C10.067 (2)0.0349 (18)0.0308 (16)0.0060 (16)−0.0036 (16)0.0105 (14)
C20.0447 (19)0.0359 (18)0.0297 (16)0.0021 (14)−0.0026 (13)0.0090 (14)
C30.057 (2)0.0401 (19)0.0380 (18)0.0119 (16)0.0013 (15)0.0168 (15)
C40.067 (2)0.053 (2)0.0384 (18)0.0134 (18)0.0000 (17)0.0252 (17)
C50.065 (2)0.050 (2)0.0280 (16)0.0102 (17)0.0010 (15)0.0142 (16)
C60.0424 (18)0.0341 (17)0.0315 (16)0.0016 (13)−0.0021 (13)0.0148 (14)
C70.060 (2)0.041 (2)0.0445 (19)0.0041 (16)−0.0108 (16)0.0180 (16)
C80.048 (2)0.0393 (18)0.0399 (18)0.0020 (15)−0.0030 (15)0.0198 (15)
C90.080 (3)0.040 (2)0.051 (2)−0.0009 (18)−0.0083 (19)0.0255 (18)
C100.101 (3)0.052 (2)0.046 (2)−0.004 (2)−0.019 (2)0.0288 (19)
C110.081 (3)0.052 (2)0.044 (2)−0.001 (2)−0.0196 (19)0.0210 (19)
C120.0416 (18)0.0377 (18)0.0389 (17)0.0032 (14)−0.0027 (14)0.0200 (15)
C130.086 (4)0.098 (5)0.256 (9)0.029 (3)0.059 (5)0.112 (6)
C140.077 (4)0.134 (5)0.101 (4)−0.006 (3)0.000 (3)0.061 (4)
C150.088 (4)0.097 (4)0.076 (3)0.030 (3)0.008 (3)0.033 (3)
C160.102 (4)0.050 (3)0.081 (3)−0.009 (2)0.031 (3)0.004 (2)
C170.089 (4)0.091 (4)0.086 (3)0.016 (3)0.012 (3)0.064 (3)
C180.080 (3)0.055 (2)0.0370 (19)0.007 (2)0.0086 (18)0.0202 (19)
Se1—C121.918 (3)C3—C41.379 (5)
Se1—Se1i2.3889 (8)C3—H30.9300
Se2—C61.919 (3)C4—C51.365 (5)
Se2—Se2ii2.3877 (7)C4—H40.9300
N1—C11.312 (4)C5—H50.9300
N1—H1A0.8600C7—C81.484 (5)
N1—H1B0.8600C8—C91.383 (5)
N2—C61.336 (4)C8—C121.403 (5)
N2—C51.346 (4)C9—C101.375 (5)
N3—C71.330 (5)C9—H90.9300
N3—H3A0.8600C10—C111.363 (5)
N3—H3B0.8600C10—H100.9300
N4—C111.328 (5)C11—H110.9300
N4—C121.330 (4)C13—H13A0.9600
N5—C151.313 (6)C13—H13B0.9600
N5—C131.403 (6)C13—H13C0.9600
N5—C141.449 (7)C14—H14A0.9600
N6—C181.311 (5)C14—H14B0.9600
N6—C161.451 (5)C14—H14C0.9600
N6—C171.460 (5)C15—H150.9300
O1—C11.233 (4)C16—H16A0.9600
O2—C71.224 (4)C16—H16B0.9600
O3—C151.210 (6)C16—H16C0.9600
O4—C181.229 (5)C17—H17A0.9600
C1—C21.487 (4)C17—H17B0.9600
C2—C31.385 (4)C17—H17C0.9600
C2—C61.406 (4)C18—H180.9300
C12—Se1—Se1i92.21 (10)C10—C9—H9120.1
C6—Se2—Se2ii92.67 (9)C8—C9—H9120.1
C1—N1—H1A120.0C11—C10—C9118.6 (3)
C1—N1—H1B120.0C11—C10—H10120.7
H1A—N1—H1B120.0C9—C10—H10120.7
C6—N2—C5117.6 (3)N4—C11—C10123.3 (4)
C7—N3—H3A120.0N4—C11—H11118.3
C7—N3—H3B120.0C10—C11—H11118.3
H3A—N3—H3B120.0N4—C12—C8122.6 (3)
C11—N4—C12118.4 (3)N4—C12—Se1116.3 (2)
C15—N5—C13123.2 (5)C8—C12—Se1121.1 (2)
C15—N5—C14118.6 (5)N5—C13—H13A109.5
C13—N5—C14118.2 (5)N5—C13—H13B109.5
C18—N6—C16121.4 (4)H13A—C13—H13B109.5
C18—N6—C17119.9 (4)N5—C13—H13C109.5
C16—N6—C17118.6 (4)H13A—C13—H13C109.5
O1—C1—N1121.8 (3)H13B—C13—H13C109.5
O1—C1—C2119.4 (3)N5—C14—H14A109.5
N1—C1—C2118.8 (3)N5—C14—H14B109.5
C3—C2—C6117.2 (3)H14A—C14—H14B109.5
C3—C2—C1122.8 (3)N5—C14—H14C109.5
C6—C2—C1120.0 (3)H14A—C14—H14C109.5
C4—C3—C2120.6 (3)H14B—C14—H14C109.5
C4—C3—H3119.7O3—C15—N5127.4 (5)
C2—C3—H3119.7O3—C15—H15116.3
C5—C4—C3117.8 (3)N5—C15—H15116.3
C5—C4—H4121.1N6—C16—H16A109.5
C3—C4—H4121.1N6—C16—H16B109.5
N2—C5—C4124.0 (3)H16A—C16—H16B109.5
N2—C5—H5118.0N6—C16—H16C109.5
C4—C5—H5118.0H16A—C16—H16C109.5
N2—C6—C2122.7 (3)H16B—C16—H16C109.5
N2—C6—Se2116.1 (2)N6—C17—H17A109.5
C2—C6—Se2121.2 (2)N6—C17—H17B109.5
O2—C7—N3122.0 (3)H17A—C17—H17B109.5
O2—C7—C8120.0 (3)N6—C17—H17C109.5
N3—C7—C8118.0 (3)H17A—C17—H17C109.5
C9—C8—C12117.2 (3)H17B—C17—H17C109.5
C9—C8—C7123.0 (3)O4—C18—N6125.9 (4)
C12—C8—C7119.8 (3)O4—C18—H18117.0
C10—C9—C8119.9 (3)N6—C18—H18117.0
D—H···AD—HH···AD···AD—H···A
N1—H1A···O40.862.092.946 (4)170
N1—H1B···O30.862.032.869 (5)163
N3—H3B···O40.862.102.919 (4)158
N3—H3A···O1iii0.862.313.081 (4)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O40.862.092.946 (4)170
N1—H1B⋯O30.862.032.869 (5)163
N3—H3B⋯O40.862.102.919 (4)158
N3—H3A⋯O1i0.862.313.081 (4)150

Symmetry code: (i) .

  3 in total

Review 1.  Chemistry of biologically important synthetic organoselenium compounds.

Authors:  G Mugesh; W W du Mont; H Sies
Journal:  Chem Rev       Date:  2001-07       Impact factor: 60.622

2.  Coordination Chemistry of 2,2'-Dipyridyl Diselenide: X-ray Crystal Structures of PySeSePy, [Zn(PySeSePy)Cl(2)], [(PySeSePy)Hg(C(6)F(5))(2)], [Mo(SePy)(2)(CO)(3)], [W(SePy)(2)(CO)(3)], and [Fe(SePy)(2)(CO)(2)] (PySeSePy = C(5)H(4)NSeSeC(5)H(4)N; SePy = [C(5)H(4)N(2-Se)-N,Se]).

Authors:  Carsten O. Kienitz; Carsten Thöne; Peter G. Jones
Journal:  Inorg Chem       Date:  1996-06-19       Impact factor: 5.165

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total

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