Literature DB >> 21579226

5,7-Dimethyl-2,3-dihydro-1H-1,4-diazepin-4-ium picrate.

Jerry P Jasinski, Ray J Butcher, H S Yathirajan, B Narayana, K Prakash Kamath.   

Abstract

In the cation of the title compound, C(7)H(13)N(2) (+)·C(6)H(2)N(3)O(7) (-), the seven-membered 1,4-diazepine ring forms a twist chair conformation. The two o-nitro groups in the anion are twisted by 35.0 (7) and 36.0 (9)° from the benzene ring. In the crystal, N-H⋯O hydrogen bonds between the cation and anion along with weak C-H⋯O hydrogen bonds produce chains along the b axis. C-H⋯O hydrogen bonds connecting the chains are also present.

Entities:  

Year:  2010        PMID: 21579226      PMCID: PMC2979234          DOI: 10.1107/S160053681001487X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological applications of 1,4-diazepine derivatives, see: Andrews et al. (2001 ▶); Block et al. (1989 ▶); Carp (1999 ▶); Moroz (2004 ▶). For treatment of CNS disorders, see: Walser et al. (1978 ▶). For pharmacological profiles, see: Carlos et al. (2004 ▶). For related structures, see: Ferguson et al. (1990 ▶); Harrison et al. (2005 ▶); Peeters et al. (1997 ▶); Petcher et al. (1985 ▶); Rashid et al. (2006 ▶); Yang et al. (2007 ▶). For density functional theory calculations, see: Schmidt & Polik (2007 ▶); Hehre et al. (1986 ▶).

Experimental

Crystal data

C7H13N2C6H2N3O7− M = 353.30 Monoclinic, a = 7.2341 (3) Å b = 27.6458 (6) Å c = 8.2831 (3) Å β = 110.611 (4)° V = 1550.52 (9) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 200 K 0.45 × 0.37 × 0.24 mm

Data collection

Oxford Diffraction Gemini diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007 ▶) T min = 0.962, T max = 0.970 24773 measured reflections 6353 independent reflections 4493 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.150 S = 1.04 6353 reflections 228 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2007 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681001487X/is2536sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681001487X/is2536Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H13N2+·C6H2N3O7F(000) = 736
Mr = 353.30Dx = 1.513 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 9544 reflections
a = 7.2341 (3) Åθ = 4.7–34.7°
b = 27.6458 (6) ŵ = 0.13 mm1
c = 8.2831 (3) ÅT = 200 K
β = 110.611 (4)°Chunk, colorless
V = 1550.52 (9) Å30.45 × 0.37 × 0.24 mm
Z = 4
Oxford Diffraction Gemini diffractometer6353 independent reflections
Radiation source: fine-focus sealed tube4493 reflections with I > 2σ(I)
graphiteRint = 0.028
Detector resolution: 10.5081 pixels mm-1θmax = 34.8°, θmin = 4.7°
φ and ω scansh = −11→11
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007)k = −43→44
Tmin = 0.962, Tmax = 0.970l = −13→13
24773 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.150H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.074P)2 + 0.3582P] where P = (Fo2 + 2Fc2)/3
6353 reflections(Δ/σ)max = 0.001
228 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1A0.30761 (14)0.42368 (3)0.49438 (11)0.02584 (19)
O21A0.1166 (2)0.37603 (5)0.19050 (14)0.0569 (4)
O22A0.2759 (3)0.30970 (5)0.20409 (16)0.0696 (5)
O41A0.2539 (2)0.20668 (4)0.67603 (15)0.0493 (3)
O42A0.2899 (2)0.23953 (4)0.92133 (14)0.0444 (3)
O61A0.4592 (2)0.41131 (4)0.99837 (13)0.0466 (3)
O62A0.26070 (17)0.45405 (3)0.79164 (13)0.0374 (2)
N2A0.2123 (2)0.34203 (4)0.27069 (14)0.0367 (3)
N4A0.27398 (18)0.24249 (4)0.76838 (15)0.0295 (2)
N6A0.34729 (18)0.41624 (4)0.84935 (13)0.0257 (2)
C1A0.28914 (16)0.38355 (4)0.55484 (14)0.0188 (2)
C2A0.25139 (19)0.33908 (4)0.45574 (14)0.0230 (2)
C3A0.2521 (2)0.29387 (4)0.52339 (15)0.0247 (2)
H3AA0.23310.26600.45240.030*
C4A0.28112 (19)0.28952 (4)0.69802 (15)0.0224 (2)
C5A0.31328 (18)0.32993 (4)0.80487 (15)0.0213 (2)
H5AA0.33400.32650.92410.026*
C6A0.31432 (17)0.37484 (4)0.73403 (14)0.0194 (2)
C7B0.2662 (3)0.50023 (5)0.18073 (19)0.0357 (3)
H7BA0.21990.46910.20880.054*
H7BB0.40740.49810.19930.054*
H7BC0.19290.50820.05970.054*
N1B0.23246 (16)0.52460 (3)0.44657 (14)0.0252 (2)
H1BC0.26480.49430.47620.030*
N2B0.24482 (17)0.63760 (3)0.48145 (13)0.0250 (2)
H2BC0.23280.66740.51410.030*
C1B0.1824 (2)0.55501 (4)0.56818 (17)0.0277 (3)
H1BA0.20140.53620.67460.033*
H1BB0.04090.56380.51780.033*
C2B0.3044 (2)0.60105 (4)0.61571 (16)0.0267 (2)
H2BA0.29270.61460.72230.032*
H2BB0.44500.59290.64060.032*
C3B0.20682 (17)0.63060 (4)0.31478 (15)0.0212 (2)
C4B0.1720 (2)0.67590 (4)0.20732 (17)0.0283 (3)
H4BA0.16550.70380.27820.042*
H4BB0.04720.67300.10980.042*
H4BC0.28060.68040.16400.042*
C5B0.20560 (19)0.58659 (4)0.23242 (15)0.0236 (2)
H5BA0.18190.58930.11250.028*
C6B0.23301 (18)0.53901 (4)0.29478 (16)0.0236 (2)
U11U22U33U12U13U23
O1A0.0363 (5)0.0169 (4)0.0265 (4)0.0020 (3)0.0138 (4)0.0052 (3)
O21A0.0920 (11)0.0391 (6)0.0227 (5)−0.0056 (6)−0.0006 (6)0.0072 (4)
O22A0.1363 (15)0.0502 (7)0.0365 (6)0.0110 (8)0.0483 (8)−0.0054 (5)
O41A0.0938 (10)0.0162 (4)0.0481 (6)−0.0019 (5)0.0378 (7)−0.0017 (4)
O42A0.0815 (9)0.0244 (5)0.0330 (5)−0.0010 (5)0.0272 (6)0.0081 (4)
O61A0.0723 (8)0.0370 (6)0.0193 (5)0.0035 (5)0.0023 (5)−0.0045 (4)
O62A0.0584 (7)0.0192 (4)0.0337 (5)0.0086 (4)0.0150 (5)−0.0019 (4)
N2A0.0604 (8)0.0305 (6)0.0191 (5)−0.0096 (5)0.0139 (5)−0.0011 (4)
N4A0.0437 (6)0.0171 (4)0.0323 (5)0.0016 (4)0.0190 (5)0.0044 (4)
N6A0.0378 (6)0.0195 (4)0.0210 (5)−0.0017 (4)0.0119 (4)−0.0019 (3)
C1A0.0215 (5)0.0170 (4)0.0183 (5)0.0017 (4)0.0075 (4)0.0011 (3)
C2A0.0325 (6)0.0205 (5)0.0165 (5)−0.0013 (4)0.0093 (4)0.0003 (4)
C3A0.0355 (6)0.0173 (5)0.0231 (5)−0.0019 (4)0.0127 (5)−0.0020 (4)
C4A0.0315 (6)0.0143 (4)0.0246 (5)0.0011 (4)0.0137 (5)0.0031 (4)
C5A0.0277 (5)0.0182 (4)0.0197 (5)0.0015 (4)0.0105 (4)0.0024 (4)
C6A0.0251 (5)0.0153 (4)0.0184 (5)0.0008 (4)0.0083 (4)−0.0009 (3)
C7B0.0506 (9)0.0219 (5)0.0345 (7)0.0020 (5)0.0146 (7)−0.0077 (5)
N1B0.0317 (5)0.0142 (4)0.0306 (5)0.0025 (4)0.0120 (4)0.0028 (3)
N2B0.0366 (6)0.0156 (4)0.0234 (5)0.0027 (4)0.0115 (4)−0.0005 (3)
C1B0.0352 (7)0.0209 (5)0.0322 (6)0.0049 (5)0.0185 (5)0.0059 (4)
C2B0.0371 (7)0.0217 (5)0.0213 (5)0.0045 (5)0.0104 (5)0.0008 (4)
C3B0.0232 (5)0.0169 (4)0.0232 (5)0.0010 (4)0.0078 (4)0.0019 (4)
C4B0.0371 (7)0.0194 (5)0.0297 (6)0.0039 (5)0.0135 (5)0.0070 (4)
C5B0.0308 (6)0.0190 (5)0.0198 (5)0.0013 (4)0.0074 (5)−0.0004 (4)
C6B0.0252 (5)0.0170 (4)0.0269 (5)−0.0002 (4)0.0071 (5)−0.0027 (4)
O1A—C1A1.2438 (13)C7B—H7BB0.9800
O21A—N2A1.2165 (17)C7B—H7BC0.9800
O22A—N2A1.2219 (18)N1B—C6B1.3202 (16)
O41A—N4A1.2281 (15)N1B—C1B1.4524 (16)
O42A—N4A1.2338 (15)N1B—H1BC0.8800
O61A—N6A1.2223 (15)N2B—C3B1.3235 (15)
O62A—N6A1.2257 (14)N2B—C2B1.4512 (15)
N2A—C2A1.4597 (15)N2B—H2BC0.8800
N4A—C4A1.4332 (14)C1B—C2B1.5199 (18)
N6A—C6A1.4558 (14)C1B—H1BA0.9900
C1A—C2A1.4496 (15)C1B—H1BB0.9900
C1A—C6A1.4504 (15)C2B—H2BA0.9900
C2A—C3A1.3692 (16)C2B—H2BB0.9900
C3A—C4A1.3918 (16)C3B—C5B1.3935 (15)
C3A—H3AA0.9500C3B—C4B1.5055 (16)
C4A—C5A1.3929 (15)C4B—H4BA0.9800
C5A—C6A1.3744 (15)C4B—H4BB0.9800
C5A—H5AA0.9500C4B—H4BC0.9800
C7B—C6B1.5031 (17)C5B—C6B1.4014 (16)
C7B—H7BA0.9800C5B—H5BA0.9500
O21A—N2A—O22A123.42 (13)C6B—N1B—C1B124.82 (10)
O21A—N2A—C2A118.62 (12)C6B—N1B—H1BC117.6
O22A—N2A—C2A117.95 (12)C1B—N1B—H1BC117.6
O41A—N4A—O42A122.28 (11)C3B—N2B—C2B126.45 (10)
O41A—N4A—C4A119.43 (11)C3B—N2B—H2BC116.8
O42A—N4A—C4A118.29 (10)C2B—N2B—H2BC116.8
O61A—N6A—O62A123.71 (11)N1B—C1B—C2B113.60 (10)
O61A—N6A—C6A118.17 (10)N1B—C1B—H1BA108.8
O62A—N6A—C6A118.12 (10)C2B—C1B—H1BA108.8
O1A—C1A—C2A123.64 (10)N1B—C1B—H1BB108.8
O1A—C1A—C6A124.58 (10)C2B—C1B—H1BB108.8
C2A—C1A—C6A111.68 (9)H1BA—C1B—H1BB107.7
C3A—C2A—C1A124.72 (10)N2B—C2B—C1B113.33 (11)
C3A—C2A—N2A116.88 (10)N2B—C2B—H2BA108.9
C1A—C2A—N2A118.39 (10)C1B—C2B—H2BA108.9
C2A—C3A—C4A118.80 (10)N2B—C2B—H2BB108.9
C2A—C3A—H3AA120.6C1B—C2B—H2BB108.9
C4A—C3A—H3AA120.6H2BA—C2B—H2BB107.7
C3A—C4A—C5A121.43 (10)N2B—C3B—C5B126.98 (10)
C3A—C4A—N4A119.15 (10)N2B—C3B—C4B115.16 (10)
C5A—C4A—N4A119.41 (10)C5B—C3B—C4B117.78 (10)
C6A—C5A—C4A118.55 (10)C3B—C4B—H4BA109.5
C6A—C5A—H5AA120.7C3B—C4B—H4BB109.5
C4A—C5A—H5AA120.7H4BA—C4B—H4BB109.5
C5A—C6A—C1A124.70 (10)C3B—C4B—H4BC109.5
C5A—C6A—N6A117.03 (10)H4BA—C4B—H4BC109.5
C1A—C6A—N6A118.26 (9)H4BB—C4B—H4BC109.5
C6B—C7B—H7BA109.5C3B—C5B—C6B131.55 (11)
C6B—C7B—H7BB109.5C3B—C5B—H5BA114.2
H7BA—C7B—H7BB109.5C6B—C5B—H5BA114.2
C6B—C7B—H7BC109.5N1B—C6B—C5B125.93 (11)
H7BA—C7B—H7BC109.5N1B—C6B—C7B115.97 (11)
H7BB—C7B—H7BC109.5C5B—C6B—C7B118.10 (11)
O1A—C1A—C2A—C3A172.43 (12)O1A—C1A—C6A—C5A−173.26 (12)
C6A—C1A—C2A—C3A−4.09 (18)C2A—C1A—C6A—C5A3.22 (17)
O1A—C1A—C2A—N2A−6.66 (18)O1A—C1A—C6A—N6A5.39 (18)
C6A—C1A—C2A—N2A176.82 (11)C2A—C1A—C6A—N6A−178.13 (10)
O21A—N2A—C2A—C3A143.77 (15)O61A—N6A—C6A—C5A34.74 (17)
O22A—N2A—C2A—C3A−35.4 (2)O62A—N6A—C6A—C5A−145.02 (12)
O21A—N2A—C2A—C1A−37.07 (19)O61A—N6A—C6A—C1A−144.01 (13)
O22A—N2A—C2A—C1A143.81 (15)O62A—N6A—C6A—C1A36.22 (16)
C1A—C2A—C3A—C4A3.4 (2)C6B—N1B—C1B—C2B−55.05 (17)
N2A—C2A—C3A—C4A−177.54 (12)C3B—N2B—C2B—C1B−45.65 (17)
C2A—C3A—C4A—C5A−1.33 (19)N1B—C1B—C2B—N2B75.70 (14)
C2A—C3A—C4A—N4A177.46 (12)C2B—N2B—C3B—C5B3.7 (2)
O41A—N4A—C4A—C3A4.2 (2)C2B—N2B—C3B—C4B−172.89 (12)
O42A—N4A—C4A—C3A−176.34 (13)N2B—C3B—C5B—C6B3.3 (2)
O41A—N4A—C4A—C5A−176.96 (13)C4B—C3B—C5B—C6B179.87 (13)
O42A—N4A—C4A—C5A2.48 (19)C1B—N1B—C6B—C5B6.9 (2)
C3A—C4A—C5A—C6A0.53 (19)C1B—N1B—C6B—C7B−173.08 (13)
N4A—C4A—C5A—C6A−178.27 (11)C3B—C5B—C6B—N1B13.0 (2)
C4A—C5A—C6A—C1A−1.66 (19)C3B—C5B—C6B—C7B−167.02 (14)
C4A—C5A—C6A—N6A179.67 (11)
D—H···AD—HH···AD···AD—H···A
N1B—H1BC···O1A0.881.982.8434 (13)169
N2B—H2BC···O42Ai0.882.092.9657 (14)176
C5A—H5AA···O22Aii0.952.543.4570 (16)162
C7B—H7BA···O1A0.982.553.2817 (17)131
C1B—H1BA···O62A0.992.453.2861 (15)142
C1B—H1BB···O1Aiii0.992.513.4477 (16)158
C2B—H2BA···O61Aiv0.992.483.0678 (16)117
C2B—H2BB···O1Av0.992.463.3135 (16)144
C4B—H4BA···O42Ai0.982.593.4692 (17)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1B—H1BC⋯O1A0.881.982.8434 (13)169
N2B—H2BC⋯O42Ai0.882.092.9657 (14)176
C5A—H5AA⋯O22Aii0.952.543.4570 (16)162
C7B—H7BA⋯O1A0.982.553.2817 (17)131
C1B—H1BA⋯O62A0.992.453.2861 (15)142
C1B—H1BB⋯O1Aiii0.992.513.4477 (16)158
C2B—H2BA⋯O61Aiv0.992.483.0678 (16)117
C2B—H2BB⋯O1Av0.992.463.3135 (16)144
C4B—H4BA⋯O42Ai0.982.593.4692 (17)149

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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