| Literature DB >> 21579200 |
Guo-Jun Lian, Bo Chen, Ting-Ting Zhang, Li-Zhen Zhuang, Hong-Ze Liang.
Abstract
There are two unique mol-ecules in the asymmetric unit of the title pyridine-thione derivative, C(6)H(7)NS, each of which adopts the thione rather than the mercaptan form. The rings in both mol-ecules are essentially planar, with maximum deviations from the least-squares planes through all non-H atoms of 0.021 (2) and 0.017 (2) Å. In the crystal structure, the mol-ecules form centrosymmetric cyclic dimers through inter-molecular N-H⋯S hydrogen bonds. Additional C-H(meth-yl)⋯S inter-actions generate a three-dimensional network.Entities:
Year: 2010 PMID: 21579200 PMCID: PMC2979122 DOI: 10.1107/S1600536810014273
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H7NS | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 12782 reflections |
| θ = 3.1–27.4° | |
| µ = 0.39 mm−1 | |
| β = 94.85 (3)° | Block, yellow |
| 0.33 × 0.33 × 0.20 mm | |
| Rigaku R-AXIS RAPID diffractometer | 2944 independent reflections |
| Radiation source: fine-focus sealed tube | 2088 reflections with |
| graphite | |
| Detector resolution: 0 pixels mm-1 | θmax = 27.4°, θmin = 3.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 12472 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2944 reflections | (Δ/σ)max < 0.001 |
| 146 parameters | Δρmax = 0.36 e Å−3 |
| 0 restraints | Δρmin = −0.26 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.52754 (9) | 0.10281 (4) | 0.87258 (5) | 0.0561 (2) | |
| S2 | 0.90012 (12) | 0.13575 (4) | 0.50014 (6) | 0.0743 (3) | |
| N1 | 0.5873 (2) | −0.07318 (12) | 0.85963 (15) | 0.0470 (4) | |
| H1A | 0.5725 | −0.0723 | 0.9319 | 0.056* | |
| N2 | 0.9262 (2) | 0.02468 (12) | 0.32400 (15) | 0.0488 (4) | |
| H2A | 0.9555 | −0.0139 | 0.3771 | 0.059* | |
| C1 | 0.6385 (5) | −0.23318 (17) | 0.8905 (2) | 0.0746 (8) | |
| H1B | 0.6160 | −0.2149 | 0.9669 | 0.112* | |
| H1C | 0.7568 | −0.2587 | 0.8916 | 0.112* | |
| H1D | 0.5509 | −0.2772 | 0.8633 | 0.112* | |
| C2 | 0.6257 (3) | −0.15375 (16) | 0.8125 (2) | 0.0541 (6) | |
| C3 | 0.6503 (4) | −0.15630 (18) | 0.6979 (2) | 0.0626 (6) | |
| H3A | 0.6773 | −0.2102 | 0.6631 | 0.075* | |
| C4 | 0.6350 (4) | −0.0782 (2) | 0.6339 (2) | 0.0658 (7) | |
| H4A | 0.6513 | −0.0800 | 0.5557 | 0.079* | |
| C5 | 0.5961 (3) | 0.00181 (18) | 0.68372 (19) | 0.0593 (6) | |
| H5A | 0.5868 | 0.0536 | 0.6392 | 0.071* | |
| C6 | 0.5702 (3) | 0.00646 (15) | 0.80167 (18) | 0.0469 (5) | |
| C7 | 0.9694 (4) | −0.10058 (16) | 0.1955 (2) | 0.0609 (6) | |
| H7A | 0.9963 | −0.1291 | 0.2687 | 0.091* | |
| H7B | 1.0723 | −0.1042 | 0.1516 | 0.091* | |
| H7C | 0.8693 | −0.1303 | 0.1546 | 0.091* | |
| C8 | 0.9229 (3) | −0.00394 (16) | 0.21353 (19) | 0.0499 (5) | |
| C9 | 0.8776 (3) | 0.05620 (18) | 0.1275 (2) | 0.0590 (6) | |
| H9A | 0.8744 | 0.0386 | 0.0508 | 0.071* | |
| C10 | 0.8365 (4) | 0.14393 (18) | 0.1558 (2) | 0.0634 (7) | |
| H10A | 0.8072 | 0.1853 | 0.0975 | 0.076* | |
| C11 | 0.8384 (3) | 0.17037 (16) | 0.2678 (2) | 0.0581 (6) | |
| H11A | 0.8074 | 0.2290 | 0.2849 | 0.070* | |
| C12 | 0.8870 (3) | 0.10976 (15) | 0.3583 (2) | 0.0517 (5) |
| S1 | 0.0712 (4) | 0.0439 (3) | 0.0542 (4) | 0.0043 (3) | 0.0104 (3) | 0.0009 (2) |
| S2 | 0.1163 (7) | 0.0487 (4) | 0.0574 (4) | 0.0151 (4) | 0.0044 (4) | −0.0032 (3) |
| N1 | 0.0524 (11) | 0.0453 (9) | 0.0438 (9) | 0.0011 (8) | 0.0076 (7) | −0.0034 (8) |
| N2 | 0.0570 (11) | 0.0408 (9) | 0.0485 (10) | 0.0023 (8) | 0.0037 (8) | 0.0057 (8) |
| C1 | 0.108 (2) | 0.0494 (14) | 0.0673 (16) | 0.0165 (14) | 0.0117 (15) | −0.0044 (12) |
| C2 | 0.0553 (14) | 0.0508 (13) | 0.0567 (13) | 0.0033 (10) | 0.0078 (10) | −0.0093 (10) |
| C3 | 0.0703 (17) | 0.0623 (15) | 0.0561 (13) | 0.0028 (12) | 0.0102 (11) | −0.0160 (12) |
| C4 | 0.0716 (17) | 0.0807 (18) | 0.0463 (12) | −0.0021 (14) | 0.0114 (11) | −0.0101 (12) |
| C5 | 0.0671 (16) | 0.0642 (15) | 0.0468 (12) | −0.0044 (12) | 0.0059 (10) | 0.0038 (11) |
| C6 | 0.0424 (12) | 0.0508 (12) | 0.0475 (11) | −0.0029 (9) | 0.0044 (8) | −0.0009 (9) |
| C7 | 0.0648 (16) | 0.0570 (14) | 0.0614 (14) | 0.0012 (12) | 0.0087 (11) | −0.0063 (11) |
| C8 | 0.0442 (12) | 0.0530 (12) | 0.0531 (12) | −0.0045 (9) | 0.0073 (9) | −0.0001 (10) |
| C9 | 0.0590 (15) | 0.0682 (16) | 0.0502 (12) | −0.0028 (12) | 0.0057 (10) | 0.0077 (11) |
| C10 | 0.0646 (16) | 0.0623 (15) | 0.0619 (15) | −0.0042 (12) | −0.0030 (11) | 0.0229 (12) |
| C11 | 0.0595 (15) | 0.0423 (11) | 0.0716 (15) | −0.0034 (10) | −0.0006 (11) | 0.0120 (11) |
| C12 | 0.0534 (13) | 0.0418 (11) | 0.0601 (13) | −0.0022 (10) | 0.0053 (10) | 0.0047 (10) |
| S1—C6 | 1.700 (2) | C4—C5 | 1.368 (4) |
| S2—C12 | 1.694 (3) | C4—H4A | 0.9300 |
| N1—C2 | 1.361 (3) | C5—C6 | 1.407 (3) |
| N1—C6 | 1.367 (3) | C5—H5A | 0.9300 |
| N1—H1A | 0.8600 | C7—C8 | 1.500 (3) |
| N2—C8 | 1.356 (3) | C7—H7A | 0.9600 |
| N2—C12 | 1.369 (3) | C7—H7B | 0.9600 |
| N2—H2A | 0.8600 | C7—H7C | 0.9600 |
| C1—C2 | 1.491 (4) | C8—C9 | 1.367 (3) |
| C1—H1B | 0.9600 | C9—C10 | 1.389 (4) |
| C1—H1C | 0.9600 | C9—H9A | 0.9300 |
| C1—H1D | 0.9600 | C10—C11 | 1.363 (4) |
| C2—C3 | 1.366 (3) | C10—H10A | 0.9300 |
| C3—C4 | 1.383 (4) | C11—C12 | 1.413 (3) |
| C3—H3A | 0.9300 | C11—H11A | 0.9300 |
| C2—N1—C6 | 125.47 (18) | N1—C6—C5 | 115.2 (2) |
| C2—N1—H1A | 117.3 | N1—C6—S1 | 120.41 (15) |
| C6—N1—H1A | 117.3 | C5—C6—S1 | 124.34 (19) |
| C8—N2—C12 | 125.61 (19) | C8—C7—H7A | 109.5 |
| C8—N2—H2A | 117.2 | C8—C7—H7B | 109.5 |
| C12—N2—H2A | 117.2 | H7A—C7—H7B | 109.5 |
| C2—C1—H1B | 109.5 | C8—C7—H7C | 109.5 |
| C2—C1—H1C | 109.5 | H7A—C7—H7C | 109.5 |
| H1B—C1—H1C | 109.5 | H7B—C7—H7C | 109.5 |
| C2—C1—H1D | 109.5 | N2—C8—C9 | 118.4 (2) |
| H1B—C1—H1D | 109.5 | N2—C8—C7 | 116.7 (2) |
| H1C—C1—H1D | 109.5 | C9—C8—C7 | 124.9 (2) |
| N1—C2—C3 | 118.1 (2) | C8—C9—C10 | 119.2 (2) |
| N1—C2—C1 | 117.3 (2) | C8—C9—H9A | 120.4 |
| C3—C2—C1 | 124.6 (2) | C10—C9—H9A | 120.4 |
| C2—C3—C4 | 119.6 (2) | C11—C10—C9 | 121.0 (2) |
| C2—C3—H3A | 120.2 | C11—C10—H10A | 119.5 |
| C4—C3—H3A | 120.2 | C9—C10—H10A | 119.5 |
| C5—C4—C3 | 121.0 (2) | C10—C11—C12 | 120.8 (2) |
| C5—C4—H4A | 119.5 | C10—C11—H11A | 119.6 |
| C3—C4—H4A | 119.5 | C12—C11—H11A | 119.6 |
| C4—C5—C6 | 120.7 (2) | N2—C12—C11 | 114.9 (2) |
| C4—C5—H5A | 119.7 | N2—C12—S2 | 120.08 (17) |
| C6—C5—H5A | 119.7 | C11—C12—S2 | 125.00 (19) |
| H··· | ||||
| N1—H1A···S1i | 0.86 | 2.50 | 3.3376 (19) | 165 |
| N2—H2A···S2ii | 0.86 | 2.50 | 3.340 (2) | 166 |
| C1—H1B···S1i | 0.96 | 2.79 | 3.678 (3) | 154 |
| C7—H7A···S2ii | 0.96 | 2.74 | 3.639 (3) | 156 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.50 | 3.3376 (19) | 165 |
| N2—H2 | 0.86 | 2.50 | 3.340 (2) | 166 |
| C1—H1 | 0.96 | 2.79 | 3.678 (3) | 154 |
| C7—H7 | 0.96 | 2.74 | 3.639 (3) | 156 |
Symmetry codes: (i) ; (ii) .