Literature DB >> 21579200

6-Methyl-pyridine-2(1H)-thione.

Guo-Jun Lian, Bo Chen, Ting-Ting Zhang, Li-Zhen Zhuang, Hong-Ze Liang.   

Abstract

There are two unique mol-ecules in the asymmetric unit of the title pyridine-thione derivative, C(6)H(7)NS, each of which adopts the thione rather than the mercaptan form. The rings in both mol-ecules are essentially planar, with maximum deviations from the least-squares planes through all non-H atoms of 0.021 (2) and 0.017 (2) Å. In the crystal structure, the mol-ecules form centrosymmetric cyclic dimers through inter-molecular N-H⋯S hydrogen bonds. Additional C-H(meth-yl)⋯S inter-actions generate a three-dimensional network.

Entities:  

Year:  2010        PMID: 21579200      PMCID: PMC2979122          DOI: 10.1107/S1600536810014273

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 2-mercaptopyridines, see: Thirtle (1946 ▶). For background to the applications of organic sulfur-containing compounds, see: Cui et al. (2009 ▶); Saadat et al. (2004 ▶); Qian et al. (2007 ▶). For metal complexes of 2-mercapto pyridine N-oxide and 6-methyl substituted derivatives, see: Hamaguchi et al. (2007 ▶); Chunchuryukin et al. (2006 ▶); Cotton et al. (1978 ▶); West et al. (1998 ▶); Fielding et al. (1997 ▶); Berardini et al. (1997 ▶); Tylicki et al. (1995 ▶); Hong et al. (1999 ▶); Cabeza et al. (2007 ▶).

Experimental

Crystal data

C6H7NS M = 125.19 Monoclinic, a = 7.4608 (15) Å b = 14.902 (3) Å c = 11.665 (2) Å β = 94.85 (3)° V = 1292.3 (4) Å3 Z = 8 Mo Kα radiation μ = 0.39 mm−1 T = 295 K 0.33 × 0.33 × 0.20 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.880, T max = 0.926 12472 measured reflections 2944 independent reflections 2088 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.148 S = 1.12 2944 reflections 146 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.26 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810014273/sj2766sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810014273/sj2766Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H7NSF(000) = 528
Mr = 125.19Dx = 1.287 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 12782 reflections
a = 7.4608 (15) Åθ = 3.1–27.4°
b = 14.902 (3) ŵ = 0.39 mm1
c = 11.665 (2) ÅT = 295 K
β = 94.85 (3)°Block, yellow
V = 1292.3 (4) Å30.33 × 0.33 × 0.20 mm
Z = 8
Rigaku R-AXIS RAPID diffractometer2944 independent reflections
Radiation source: fine-focus sealed tube2088 reflections with I > 2σ(I)
graphiteRint = 0.030
Detector resolution: 0 pixels mm-1θmax = 27.4°, θmin = 3.1°
ω scansh = −9→9
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −19→19
Tmin = 0.880, Tmax = 0.926l = −15→15
12472 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.148H-atom parameters constrained
S = 1.12w = 1/[σ2(Fo2) + (0.0738P)2 + 0.3029P] where P = (Fo2 + 2Fc2)/3
2944 reflections(Δ/σ)max < 0.001
146 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.52754 (9)0.10281 (4)0.87258 (5)0.0561 (2)
S20.90012 (12)0.13575 (4)0.50014 (6)0.0743 (3)
N10.5873 (2)−0.07318 (12)0.85963 (15)0.0470 (4)
H1A0.5725−0.07230.93190.056*
N20.9262 (2)0.02468 (12)0.32400 (15)0.0488 (4)
H2A0.9555−0.01390.37710.059*
C10.6385 (5)−0.23318 (17)0.8905 (2)0.0746 (8)
H1B0.6160−0.21490.96690.112*
H1C0.7568−0.25870.89160.112*
H1D0.5509−0.27720.86330.112*
C20.6257 (3)−0.15375 (16)0.8125 (2)0.0541 (6)
C30.6503 (4)−0.15630 (18)0.6979 (2)0.0626 (6)
H3A0.6773−0.21020.66310.075*
C40.6350 (4)−0.0782 (2)0.6339 (2)0.0658 (7)
H4A0.6513−0.08000.55570.079*
C50.5961 (3)0.00181 (18)0.68372 (19)0.0593 (6)
H5A0.58680.05360.63920.071*
C60.5702 (3)0.00646 (15)0.80167 (18)0.0469 (5)
C70.9694 (4)−0.10058 (16)0.1955 (2)0.0609 (6)
H7A0.9963−0.12910.26870.091*
H7B1.0723−0.10420.15160.091*
H7C0.8693−0.13030.15460.091*
C80.9229 (3)−0.00394 (16)0.21353 (19)0.0499 (5)
C90.8776 (3)0.05620 (18)0.1275 (2)0.0590 (6)
H9A0.87440.03860.05080.071*
C100.8365 (4)0.14393 (18)0.1558 (2)0.0634 (7)
H10A0.80720.18530.09750.076*
C110.8384 (3)0.17037 (16)0.2678 (2)0.0581 (6)
H11A0.80740.22900.28490.070*
C120.8870 (3)0.10976 (15)0.3583 (2)0.0517 (5)
U11U22U33U12U13U23
S10.0712 (4)0.0439 (3)0.0542 (4)0.0043 (3)0.0104 (3)0.0009 (2)
S20.1163 (7)0.0487 (4)0.0574 (4)0.0151 (4)0.0044 (4)−0.0032 (3)
N10.0524 (11)0.0453 (9)0.0438 (9)0.0011 (8)0.0076 (7)−0.0034 (8)
N20.0570 (11)0.0408 (9)0.0485 (10)0.0023 (8)0.0037 (8)0.0057 (8)
C10.108 (2)0.0494 (14)0.0673 (16)0.0165 (14)0.0117 (15)−0.0044 (12)
C20.0553 (14)0.0508 (13)0.0567 (13)0.0033 (10)0.0078 (10)−0.0093 (10)
C30.0703 (17)0.0623 (15)0.0561 (13)0.0028 (12)0.0102 (11)−0.0160 (12)
C40.0716 (17)0.0807 (18)0.0463 (12)−0.0021 (14)0.0114 (11)−0.0101 (12)
C50.0671 (16)0.0642 (15)0.0468 (12)−0.0044 (12)0.0059 (10)0.0038 (11)
C60.0424 (12)0.0508 (12)0.0475 (11)−0.0029 (9)0.0044 (8)−0.0009 (9)
C70.0648 (16)0.0570 (14)0.0614 (14)0.0012 (12)0.0087 (11)−0.0063 (11)
C80.0442 (12)0.0530 (12)0.0531 (12)−0.0045 (9)0.0073 (9)−0.0001 (10)
C90.0590 (15)0.0682 (16)0.0502 (12)−0.0028 (12)0.0057 (10)0.0077 (11)
C100.0646 (16)0.0623 (15)0.0619 (15)−0.0042 (12)−0.0030 (11)0.0229 (12)
C110.0595 (15)0.0423 (11)0.0716 (15)−0.0034 (10)−0.0006 (11)0.0120 (11)
C120.0534 (13)0.0418 (11)0.0601 (13)−0.0022 (10)0.0053 (10)0.0047 (10)
S1—C61.700 (2)C4—C51.368 (4)
S2—C121.694 (3)C4—H4A0.9300
N1—C21.361 (3)C5—C61.407 (3)
N1—C61.367 (3)C5—H5A0.9300
N1—H1A0.8600C7—C81.500 (3)
N2—C81.356 (3)C7—H7A0.9600
N2—C121.369 (3)C7—H7B0.9600
N2—H2A0.8600C7—H7C0.9600
C1—C21.491 (4)C8—C91.367 (3)
C1—H1B0.9600C9—C101.389 (4)
C1—H1C0.9600C9—H9A0.9300
C1—H1D0.9600C10—C111.363 (4)
C2—C31.366 (3)C10—H10A0.9300
C3—C41.383 (4)C11—C121.413 (3)
C3—H3A0.9300C11—H11A0.9300
C2—N1—C6125.47 (18)N1—C6—C5115.2 (2)
C2—N1—H1A117.3N1—C6—S1120.41 (15)
C6—N1—H1A117.3C5—C6—S1124.34 (19)
C8—N2—C12125.61 (19)C8—C7—H7A109.5
C8—N2—H2A117.2C8—C7—H7B109.5
C12—N2—H2A117.2H7A—C7—H7B109.5
C2—C1—H1B109.5C8—C7—H7C109.5
C2—C1—H1C109.5H7A—C7—H7C109.5
H1B—C1—H1C109.5H7B—C7—H7C109.5
C2—C1—H1D109.5N2—C8—C9118.4 (2)
H1B—C1—H1D109.5N2—C8—C7116.7 (2)
H1C—C1—H1D109.5C9—C8—C7124.9 (2)
N1—C2—C3118.1 (2)C8—C9—C10119.2 (2)
N1—C2—C1117.3 (2)C8—C9—H9A120.4
C3—C2—C1124.6 (2)C10—C9—H9A120.4
C2—C3—C4119.6 (2)C11—C10—C9121.0 (2)
C2—C3—H3A120.2C11—C10—H10A119.5
C4—C3—H3A120.2C9—C10—H10A119.5
C5—C4—C3121.0 (2)C10—C11—C12120.8 (2)
C5—C4—H4A119.5C10—C11—H11A119.6
C3—C4—H4A119.5C12—C11—H11A119.6
C4—C5—C6120.7 (2)N2—C12—C11114.9 (2)
C4—C5—H5A119.7N2—C12—S2120.08 (17)
C6—C5—H5A119.7C11—C12—S2125.00 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1A···S1i0.862.503.3376 (19)165
N2—H2A···S2ii0.862.503.340 (2)166
C1—H1B···S1i0.962.793.678 (3)154
C7—H7A···S2ii0.962.743.639 (3)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯S1i0.862.503.3376 (19)165
N2—H2A⋯S2ii0.862.503.340 (2)166
C1—H1B⋯S1i0.962.793.678 (3)154
C7—H7A⋯S2ii0.962.743.639 (3)156

Symmetry codes: (i) ; (ii) .

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