Literature DB >> 21579182

1-(2-Fluoro-phen-yl)-3-(3,4,5-trimethoxy-benzo-yl)thio-urea.

Aamer Saeed, Uzma Shaheen, Ulrich Flörke.   

Abstract

The two m-meth-oxy groups of the title compound, C(17)H(17)FN(2)O(4)S, are almost coplanar with the aromatic ring [CH(3)-O-C-C = 5.8 (1) and 5.9 (1)°], whereas the meth-oxy group in the para position is bent out of the ring plane [78.6 (1)°]. Mol-ecules are connected by inter-molecular N-H⋯S hydrogen bonds to form centrosymmetric dimers that are stacked along the a axis.

Entities:  

Year:  2010        PMID: 21579182      PMCID: PMC2979251          DOI: 10.1107/S160053681001408X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the biological activity of fluorinated thio­ureas, see: Sun et al. (2006 ▶); Saeed et al. (2009 ▶); Xu et al. (2003 ▶). For the use of fluorinated thio­ureas in organic synthesis, see: Nosova et al. (2006 ▶, 2007 ▶); Berkessel et al. (2006 ▶). For fluorine-containing heterocycles, see: Lipunova et al. (2008 ▶). For intra­molecular hydrogen bonds and Fermi resonance measurements, see: Hritzová & Koščík (2008 ▶).

Experimental

Crystal data

C17H17FN2O4S M = 364.39 Triclinic, a = 4.0828 (5) Å b = 14.0420 (16) Å c = 14.2295 (16) Å α = 91.092 (2)° β = 90.694 (2)° γ = 91.712 (2)° V = 815.21 (16) Å3 Z = 2 Mo Kα radiation μ = 0.24 mm−1 T = 120 K 0.48 × 0.20 × 0.19 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.896, T max = 0.957 7686 measured reflections 3868 independent reflections 3128 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.109 S = 1.03 3868 reflections 226 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681001408X/si2257sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681001408X/si2257Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H17FN2O4SZ = 2
Mr = 364.39F(000) = 380
Triclinic, P1Dx = 1.484 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.0828 (5) ÅCell parameters from 2067 reflections
b = 14.0420 (16) Åθ = 2.9–28.2°
c = 14.2295 (16) ŵ = 0.24 mm1
α = 91.092 (2)°T = 120 K
β = 90.694 (2)°Prism, colourless
γ = 91.712 (2)°0.48 × 0.20 × 0.19 mm
V = 815.21 (16) Å3
Bruker SMART APEX diffractometer3868 independent reflections
Radiation source: sealed tube3128 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 27.9°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −5→5
Tmin = 0.896, Tmax = 0.957k = −18→18
7686 measured reflectionsl = −17→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: difference Fourier map
wR(F2) = 0.109H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0485P)2 + 0.2731P] where P = (Fo2 + 2Fc2)/3
3868 reflections(Δ/σ)max < 0.001
226 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.28840 (12)0.51052 (3)0.37700 (3)0.02191 (13)
F10.1367 (3)0.83707 (8)0.21822 (8)0.0346 (3)
O10.0156 (4)0.81511 (9)0.44315 (9)0.0287 (3)
O2−0.5433 (3)0.95757 (8)0.72291 (8)0.0239 (3)
O3−0.3506 (3)0.85284 (8)0.86784 (8)0.0220 (3)
O40.0054 (3)0.70067 (8)0.84415 (8)0.0228 (3)
N10.2791 (4)0.69556 (10)0.32920 (10)0.0220 (3)
H1A0.23600.75320.35000.026*
N20.0880 (4)0.65816 (10)0.47587 (10)0.0199 (3)
H2A0.05590.61480.51890.024*
C10.3979 (4)0.69150 (12)0.23660 (12)0.0199 (4)
C20.5894 (5)0.62118 (13)0.19798 (13)0.0264 (4)
H2B0.65120.56870.23470.032*
C30.6906 (5)0.62772 (13)0.10527 (14)0.0309 (5)
H3A0.82100.57920.07910.037*
C40.6043 (5)0.70389 (13)0.05025 (13)0.0279 (4)
H4A0.67290.7071−0.01320.033*
C50.4183 (5)0.77486 (13)0.08855 (13)0.0271 (4)
H5A0.35900.82790.05220.032*
C60.3206 (5)0.76752 (12)0.17987 (13)0.0232 (4)
C70.2210 (4)0.62634 (12)0.39079 (11)0.0176 (3)
C80.0018 (4)0.74974 (11)0.49981 (12)0.0190 (3)
C9−0.1053 (4)0.76904 (11)0.59750 (11)0.0174 (3)
C10−0.2858 (4)0.85088 (11)0.61089 (12)0.0189 (3)
H10A−0.35180.88680.55840.023*
C11−0.3685 (4)0.87953 (11)0.70090 (12)0.0187 (3)
C12−0.2668 (4)0.82639 (11)0.77787 (11)0.0182 (3)
C13−0.0860 (4)0.74466 (11)0.76356 (11)0.0175 (3)
C14−0.0055 (4)0.71485 (11)0.67339 (12)0.0181 (3)
H14A0.11500.65880.66350.022*
C15−0.6232 (5)1.01977 (12)0.64767 (13)0.0262 (4)
H15A−0.74841.07300.67230.039*
H15B−0.75490.98430.59990.039*
H15C−0.42101.04440.61940.039*
C16−0.1525 (5)0.93050 (14)0.90583 (13)0.0296 (4)
H16A−0.22410.94600.96970.044*
H16B−0.17530.98630.86620.044*
H16C0.07740.91240.90770.044*
C170.1706 (5)0.61312 (12)0.83456 (13)0.0247 (4)
H17B0.22310.58910.89700.037*
H17C0.37350.62370.79960.037*
H17D0.02890.56630.80040.037*
U11U22U33U12U13U23
S10.0321 (3)0.0160 (2)0.0179 (2)0.00099 (17)0.00664 (18)0.00108 (16)
F10.0514 (8)0.0262 (6)0.0278 (6)0.0146 (5)0.0146 (5)0.0083 (5)
O10.0488 (9)0.0200 (6)0.0181 (6)0.0067 (6)0.0106 (6)0.0048 (5)
O20.0307 (7)0.0210 (6)0.0207 (6)0.0083 (5)0.0058 (5)0.0027 (5)
O30.0309 (7)0.0197 (6)0.0152 (6)−0.0016 (5)0.0066 (5)−0.0027 (5)
O40.0358 (8)0.0189 (6)0.0139 (6)0.0060 (5)0.0014 (5)0.0024 (5)
N10.0360 (9)0.0155 (7)0.0147 (7)0.0027 (6)0.0068 (6)0.0006 (5)
N20.0310 (9)0.0165 (7)0.0123 (7)0.0005 (6)0.0037 (6)0.0016 (5)
C10.0266 (10)0.0195 (8)0.0135 (8)−0.0010 (7)0.0035 (7)0.0018 (6)
C20.0348 (11)0.0218 (9)0.0233 (9)0.0045 (8)0.0084 (8)0.0050 (7)
C30.0431 (12)0.0252 (9)0.0250 (10)0.0035 (8)0.0141 (9)−0.0003 (8)
C40.0388 (12)0.0298 (10)0.0150 (8)−0.0035 (8)0.0076 (8)0.0017 (7)
C50.0339 (11)0.0277 (9)0.0199 (9)−0.0004 (8)0.0022 (8)0.0091 (7)
C60.0281 (10)0.0208 (8)0.0209 (9)0.0028 (7)0.0047 (7)0.0004 (7)
C70.0211 (9)0.0196 (8)0.0122 (8)−0.0004 (6)0.0017 (6)−0.0002 (6)
C80.0241 (9)0.0174 (8)0.0156 (8)0.0001 (6)0.0023 (7)0.0007 (6)
C90.0215 (9)0.0160 (7)0.0146 (8)−0.0031 (6)0.0038 (7)−0.0019 (6)
C100.0228 (9)0.0175 (8)0.0167 (8)−0.0003 (6)0.0027 (7)0.0036 (6)
C110.0201 (9)0.0159 (8)0.0202 (8)−0.0004 (6)0.0033 (7)0.0000 (6)
C120.0233 (9)0.0167 (8)0.0146 (8)−0.0024 (6)0.0046 (7)−0.0016 (6)
C130.0221 (9)0.0150 (7)0.0153 (8)−0.0024 (6)0.0004 (7)0.0032 (6)
C140.0224 (9)0.0141 (7)0.0176 (8)−0.0008 (6)0.0029 (7)−0.0002 (6)
C150.0312 (11)0.0219 (9)0.0260 (10)0.0063 (7)0.0017 (8)0.0053 (7)
C160.0355 (11)0.0311 (10)0.0216 (9)−0.0034 (8)0.0032 (8)−0.0087 (8)
C170.0320 (10)0.0207 (8)0.0217 (9)0.0059 (7)−0.0006 (8)0.0031 (7)
S1—C71.6659 (17)C4—H4A0.9500
F1—C61.360 (2)C5—C61.369 (2)
O1—C81.2337 (19)C5—H5A0.9500
O2—C111.359 (2)C8—C91.485 (2)
O2—C151.435 (2)C9—C101.395 (2)
O3—C121.3763 (19)C9—C141.397 (2)
O3—C161.432 (2)C10—C111.384 (2)
O4—C131.3660 (19)C10—H10A0.9500
O4—C171.425 (2)C11—C121.403 (2)
N1—C71.339 (2)C12—C131.396 (2)
N1—C11.410 (2)C13—C141.388 (2)
N1—H1A0.8800C14—H14A0.9500
N2—C81.381 (2)C15—H15A0.9800
N2—C71.404 (2)C15—H15B0.9800
N2—H2A0.8800C15—H15C0.9800
C1—C21.387 (2)C16—H16A0.9800
C1—C61.392 (2)C16—H16B0.9800
C2—C31.391 (3)C16—H16C0.9800
C2—H2B0.9500C17—H17B0.9800
C3—C41.389 (3)C17—H17C0.9800
C3—H3A0.9500C17—H17D0.9800
C4—C51.379 (3)
C11—O2—C15117.24 (13)C14—C9—C8122.59 (15)
C12—O3—C16113.37 (13)C11—C10—C9119.76 (15)
C13—O4—C17117.45 (13)C11—C10—H10A120.1
C7—N1—C1130.78 (14)C9—C10—H10A120.1
C7—N1—H1A114.6O2—C11—C10125.26 (15)
C1—N1—H1A114.6O2—C11—C12115.17 (14)
C8—N2—C7127.44 (14)C10—C11—C12119.56 (15)
C8—N2—H2A116.3O3—C12—C13119.38 (14)
C7—N2—H2A116.3O3—C12—C11120.47 (15)
C2—C1—C6117.45 (16)C13—C12—C11120.13 (15)
C2—C1—N1126.57 (15)O4—C13—C14124.86 (15)
C6—C1—N1115.96 (15)O4—C13—C12114.50 (14)
C1—C2—C3119.80 (17)C14—C13—C12120.63 (15)
C1—C2—H2B120.1C13—C14—C9118.61 (15)
C3—C2—H2B120.1C13—C14—H14A120.7
C4—C3—C2121.17 (18)C9—C14—H14A120.7
C4—C3—H3A119.4O2—C15—H15A109.5
C2—C3—H3A119.4O2—C15—H15B109.5
C5—C4—C3119.40 (17)H15A—C15—H15B109.5
C5—C4—H4A120.3O2—C15—H15C109.5
C3—C4—H4A120.3H15A—C15—H15C109.5
C6—C5—C4118.79 (16)H15B—C15—H15C109.5
C6—C5—H5A120.6O3—C16—H16A109.5
C4—C5—H5A120.6O3—C16—H16B109.5
F1—C6—C5119.23 (15)H16A—C16—H16B109.5
F1—C6—C1117.40 (15)O3—C16—H16C109.5
C5—C6—C1123.38 (17)H16A—C16—H16C109.5
N1—C7—N2114.10 (14)H16B—C16—H16C109.5
N1—C7—S1127.56 (13)O4—C17—H17B109.5
N2—C7—S1118.34 (12)O4—C17—H17C109.5
O1—C8—N2122.03 (15)H17B—C17—H17C109.5
O1—C8—C9119.80 (15)O4—C17—H17D109.5
N2—C8—C9118.16 (14)H17B—C17—H17D109.5
C10—C9—C14121.30 (15)H17C—C17—H17D109.5
C10—C9—C8115.80 (14)
C7—N1—C1—C2−24.6 (3)C14—C9—C10—C110.0 (3)
C7—N1—C1—C6157.28 (18)C8—C9—C10—C11−173.74 (15)
C6—C1—C2—C3−1.2 (3)C15—O2—C11—C10−5.8 (3)
N1—C1—C2—C3−179.34 (19)C15—O2—C11—C12173.60 (15)
C1—C2—C3—C40.2 (3)C9—C10—C11—O2−179.91 (16)
C2—C3—C4—C50.8 (3)C9—C10—C11—C120.7 (3)
C3—C4—C5—C6−0.7 (3)C16—O3—C12—C13102.98 (18)
C4—C5—C6—F1−179.93 (17)C16—O3—C12—C11−78.6 (2)
C4—C5—C6—C1−0.3 (3)O2—C11—C12—O31.5 (2)
C2—C1—C6—F1−179.10 (16)C10—C11—C12—O3−179.01 (15)
N1—C1—C6—F1−0.8 (3)O2—C11—C12—C13179.89 (15)
C2—C1—C6—C51.3 (3)C10—C11—C12—C13−0.6 (3)
N1—C1—C6—C5179.62 (18)C17—O4—C13—C14−5.9 (2)
C1—N1—C7—N2−177.33 (17)C17—O4—C13—C12175.70 (15)
C1—N1—C7—S12.7 (3)O3—C12—C13—O4−3.2 (2)
C8—N2—C7—N12.9 (3)C11—C12—C13—O4178.39 (15)
C8—N2—C7—S1−177.17 (14)O3—C12—C13—C14178.27 (15)
C7—N2—C8—O14.8 (3)C11—C12—C13—C14−0.1 (3)
C7—N2—C8—C9−174.22 (16)O4—C13—C14—C9−177.53 (16)
O1—C8—C9—C1020.7 (3)C12—C13—C14—C90.8 (3)
N2—C8—C9—C10−160.21 (16)C10—C9—C14—C13−0.8 (3)
O1—C8—C9—C14−152.96 (18)C8—C9—C14—C13172.57 (16)
N2—C8—C9—C1426.1 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2A···S1i0.882.703.5219 (15)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯S1i0.882.703.5219 (15)157

Symmetry code: (i) .

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