Literature DB >> 21579176

6-Chloro-8-methyl-4H-3,1-benzoxazine-2,4(1H)-dione.

Yan-Ling Zhou, Hua Wang, Min Zhao.   

Abstract

The two mol-ecules in the asymmetric unit of the title compound, C(9)H(6)ClNO(3), are nearly planar, with r.m.s. deviations of 0.034 and 0.037 Å. The crystal structure is stabilized by two weak inter-molecular N-H⋯O inter-actions.

Entities:  

Year:  2010        PMID: 21579176      PMCID: PMC2979130          DOI: 10.1107/S1600536810013346

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to isatoic anhydrides, see: Miyamae (1996 ▶); Nawrot et al. (1997 ▶); Nawrot & Sprinz (1998 ▶); Deifel et al. (2010 ▶); Ren et al. (1996 ▶). For the preparation, see: Coppola (1980 ▶).

Experimental

Crystal data

C9H6ClNO3 M = 211.60 Monoclinic, a = 8.3019 (12) Å b = 13.1322 (18) Å c = 15.742 (2) Å β = 99.675 (9)° V = 1691.8 (4) Å3 Z = 8 Cu Kα radiation μ = 3.85 mm−1 T = 173 K 0.22 × 0.22 × 0.15 mm

Data collection

Rigaku R-AXIS RAPID IP area-detector diffractometer Absorption correction: numerical (NUMABS; Higashi, 1999 ▶) T min = 0.485, T max = 0.596 11524 measured reflections 3050 independent reflections 2280 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.107 S = 1.01 3050 reflections 256 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.29 e Å−3 Data collection: RAPID-AUTO (Rigaku, 2001 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810013346/vm2022sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810013346/vm2022Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H6ClNO3F(000) = 864
Mr = 211.60Dx = 1.661 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54186 Å
Hall symbol: -P 2ynCell parameters from 687 reflections
a = 8.3019 (12) Åθ = 3.1–68.2°
b = 13.1322 (18) ŵ = 3.85 mm1
c = 15.742 (2) ÅT = 173 K
β = 99.675 (9)°Plate, colorless
V = 1691.8 (4) Å30.22 × 0.22 × 0.15 mm
Z = 8
Rigaku R-AXIS RAPID IP area-detector diffractometer3050 independent reflections
Radiation source: rotating anode2280 reflections with I > 2σ(I)
graphiteRint = 0.054
ω scansθmax = 68.2°, θmin = 4.4°
Absorption correction: numerical (NUMABS; Higashi, 1999)h = −10→9
Tmin = 0.485, Tmax = 0.596k = −15→15
11524 measured reflectionsl = −18→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.107w = 1/[σ2(Fo2) + (0.0569P)2] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
3050 reflectionsΔρmax = 0.49 e Å3
256 parametersΔρmin = −0.29 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0023 (3)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.74255 (7)0.37308 (4)0.31233 (4)0.03722 (19)
Cl20.15868 (6)0.36329 (4)0.20423 (3)0.03096 (18)
O10.15834 (17)0.35341 (10)0.42141 (10)0.0352 (4)
O20.21462 (17)0.36049 (9)0.56311 (10)0.0292 (4)
O30.25940 (17)0.36009 (10)0.70532 (10)0.0343 (4)
O40.74385 (17)0.36875 (10)0.09544 (10)0.0325 (4)
O50.68671 (17)0.37641 (10)−0.04621 (9)0.0281 (4)
O60.64195 (17)0.37865 (10)−0.18829 (10)0.0342 (4)
N10.4795 (2)0.37337 (11)0.63750 (11)0.0263 (4)
H1A0.54720.37890.68670.032*
N20.4212 (2)0.38050 (11)−0.12090 (11)0.0248 (4)
H2A0.35310.3836−0.17010.030*
C10.6645 (3)0.37491 (14)0.40801 (14)0.0287 (5)
C20.4986 (3)0.36648 (13)0.40569 (14)0.0265 (5)
H2B0.42610.36070.35240.032*
C30.4396 (3)0.36668 (13)0.48353 (14)0.0251 (5)
C40.5457 (3)0.37476 (13)0.56177 (13)0.0232 (5)
C50.7156 (3)0.38488 (13)0.56459 (14)0.0255 (5)
C60.7711 (3)0.38478 (13)0.48592 (14)0.0270 (5)
H6A0.88490.39160.48540.032*
C70.2637 (3)0.35950 (14)0.48294 (14)0.0262 (5)
C80.3186 (3)0.36409 (14)0.64046 (15)0.0277 (5)
C90.8305 (2)0.39789 (15)0.64787 (13)0.0297 (5)
H9A0.94270.40320.63650.045*
H9B0.82170.33900.68510.045*
H9C0.80230.46000.67660.045*
C100.2366 (3)0.37177 (13)0.10859 (14)0.0260 (5)
C110.4028 (2)0.36882 (13)0.11139 (14)0.0250 (5)
H11A0.47540.36410.16480.030*
C120.4623 (3)0.37296 (13)0.03310 (14)0.0245 (5)
C130.3552 (3)0.37864 (12)−0.04491 (13)0.0226 (5)
C140.1853 (2)0.38394 (14)−0.04755 (14)0.0248 (5)
C150.1296 (3)0.38043 (12)0.03084 (14)0.0249 (5)
H15A0.01550.38410.03130.030*
C160.6380 (3)0.37193 (13)0.03436 (14)0.0252 (5)
C170.5828 (3)0.37785 (14)−0.12356 (15)0.0278 (5)
C180.0708 (2)0.39453 (15)−0.13148 (14)0.0299 (5)
H18A−0.04210.3958−0.12080.045*
H18B0.08520.3367−0.16880.045*
H18C0.09440.4580−0.15970.045*
U11U22U33U12U13U23
Cl10.0344 (3)0.0529 (4)0.0255 (3)0.0024 (2)0.0083 (3)−0.0006 (2)
Cl20.0292 (3)0.0399 (3)0.0246 (3)−0.0011 (2)0.0072 (2)0.0001 (2)
O10.0251 (8)0.0467 (9)0.0321 (10)−0.0004 (7)−0.0004 (8)0.0003 (7)
O20.0202 (7)0.0424 (9)0.0244 (9)−0.0006 (6)0.0020 (7)0.0030 (6)
O30.0242 (8)0.0540 (10)0.0252 (9)−0.0013 (7)0.0053 (7)0.0004 (7)
O40.0222 (8)0.0449 (9)0.0287 (9)0.0000 (6)−0.0012 (8)0.0026 (7)
O50.0178 (7)0.0407 (8)0.0252 (9)−0.0001 (6)0.0019 (7)−0.0038 (6)
O60.0220 (8)0.0575 (10)0.0240 (9)−0.0022 (6)0.0062 (7)−0.0037 (7)
N10.0210 (9)0.0348 (10)0.0225 (10)−0.0011 (7)0.0016 (8)−0.0008 (7)
N20.0177 (9)0.0349 (9)0.0209 (10)−0.0006 (7)0.0007 (8)0.0000 (7)
C10.0324 (12)0.0304 (11)0.0236 (13)0.0030 (9)0.0059 (10)0.0010 (8)
C20.0259 (11)0.0275 (11)0.0250 (12)0.0030 (8)0.0007 (10)0.0010 (8)
C30.0236 (11)0.0251 (10)0.0257 (12)0.0007 (8)0.0015 (10)0.0004 (8)
C40.0228 (11)0.0213 (10)0.0249 (12)0.0001 (7)0.0025 (10)0.0008 (8)
C50.0244 (11)0.0245 (10)0.0268 (13)0.0015 (8)0.0021 (10)−0.0015 (8)
C60.0222 (11)0.0300 (11)0.0289 (13)0.0005 (8)0.0047 (10)−0.0005 (9)
C70.0232 (11)0.0278 (11)0.0258 (13)−0.0001 (8)−0.0015 (10)0.0006 (8)
C80.0247 (11)0.0280 (11)0.0292 (13)0.0015 (8)0.0009 (10)0.0037 (9)
C90.0222 (11)0.0388 (12)0.0272 (13)−0.0023 (9)0.0019 (10)−0.0019 (9)
C100.0275 (11)0.0256 (10)0.0253 (13)−0.0024 (8)0.0060 (10)−0.0020 (8)
C110.0230 (11)0.0282 (11)0.0230 (12)0.0003 (8)0.0012 (10)0.0004 (8)
C120.0206 (10)0.0240 (10)0.0284 (13)−0.0015 (8)0.0028 (10)−0.0013 (8)
C130.0231 (11)0.0223 (10)0.0224 (12)−0.0011 (8)0.0037 (10)0.0001 (8)
C140.0206 (10)0.0240 (10)0.0288 (13)−0.0004 (8)0.0011 (10)−0.0003 (8)
C150.0197 (10)0.0259 (10)0.0286 (13)−0.0006 (8)0.0030 (9)−0.0007 (8)
C160.0219 (11)0.0261 (10)0.0265 (13)0.0006 (8)0.0012 (10)−0.0006 (8)
C170.0250 (11)0.0300 (11)0.0277 (13)−0.0018 (8)0.0022 (10)−0.0039 (9)
C180.0205 (11)0.0381 (12)0.0304 (13)0.0020 (9)0.0020 (10)0.0008 (9)
Cl1—C11.737 (2)C3—C71.462 (3)
Cl2—C101.739 (2)C4—C51.410 (3)
O1—C71.194 (2)C5—C61.392 (3)
O2—C81.370 (3)C5—C91.496 (3)
O2—C71.390 (3)C6—H6A0.9500
O3—C81.206 (2)C9—H9A0.9800
O4—C161.189 (3)C9—H9B0.9800
O5—C171.369 (3)C9—H9C0.9800
O5—C161.396 (3)C10—C111.374 (3)
O6—C171.203 (2)C10—C151.391 (3)
N1—C81.350 (3)C11—C121.403 (3)
N1—C41.394 (3)C11—H11A0.9500
N1—H1A0.8800C12—C131.392 (3)
N2—C171.349 (3)C12—C161.456 (3)
N2—C131.397 (3)C13—C141.406 (3)
N2—H2A0.8800C14—C151.389 (3)
C1—C21.376 (3)C14—C181.499 (3)
C1—C61.393 (3)C15—H15A0.9500
C2—C31.394 (3)C18—H18A0.9800
C2—H2B0.9500C18—H18B0.9800
C3—C41.393 (3)C18—H18C0.9800
C8—O2—C7124.77 (17)H9A—C9—H9B109.5
C17—O5—C16124.97 (17)C5—C9—H9C109.5
C8—N1—C4124.42 (19)H9A—C9—H9C109.5
C8—N1—H1A117.8H9B—C9—H9C109.5
C4—N1—H1A117.8C11—C10—C15121.3 (2)
C17—N2—C13124.13 (18)C11—C10—Cl2119.22 (17)
C17—N2—H2A117.9C15—C10—Cl2119.45 (17)
C13—N2—H2A117.9C10—C11—C12118.0 (2)
C2—C1—C6121.1 (2)C10—C11—H11A121.0
C2—C1—Cl1119.58 (18)C12—C11—H11A121.0
C6—C1—Cl1119.34 (17)C13—C12—C11120.68 (19)
C1—C2—C3118.3 (2)C13—C12—C16120.2 (2)
C1—C2—H2B120.8C11—C12—C16119.14 (19)
C3—C2—H2B120.8C12—C13—N2118.17 (19)
C4—C3—C2120.9 (2)C12—C13—C14121.2 (2)
C4—C3—C7119.6 (2)N2—C13—C14120.65 (19)
C2—C3—C7119.51 (19)C15—C14—C13116.99 (19)
C3—C4—N1118.26 (19)C15—C14—C18121.99 (19)
C3—C4—C5121.1 (2)C13—C14—C18121.01 (19)
N1—C4—C5120.68 (19)C14—C15—C10121.7 (2)
C6—C5—C4116.81 (19)C14—C15—H15A119.1
C6—C5—C9121.48 (19)C10—C15—H15A119.1
C4—C5—C9121.69 (19)O4—C16—O5116.66 (19)
C5—C6—C1121.8 (2)O4—C16—C12127.9 (2)
C5—C6—H6A119.1O5—C16—C12115.46 (18)
C1—C6—H6A119.1O6—C17—N2125.1 (2)
O1—C7—O2116.79 (19)O6—C17—O5117.84 (19)
O1—C7—C3127.2 (2)N2—C17—O5117.00 (19)
O2—C7—C3116.02 (18)C14—C18—H18A109.5
O3—C8—N1125.4 (2)C14—C18—H18B109.5
O3—C8—O2117.74 (19)H18A—C18—H18B109.5
N1—C8—O2116.9 (2)C14—C18—H18C109.5
C5—C9—H9A109.5H18A—C18—H18C109.5
C5—C9—H9B109.5H18B—C18—H18C109.5
C6—C1—C2—C3−0.8 (3)C15—C10—C11—C12−1.1 (3)
Cl1—C1—C2—C3179.08 (13)Cl2—C10—C11—C12178.26 (12)
C1—C2—C3—C4−0.3 (3)C10—C11—C12—C13−0.7 (3)
C1—C2—C3—C7179.00 (16)C10—C11—C12—C16178.83 (16)
C2—C3—C4—N1−179.29 (15)C11—C12—C13—N2−178.74 (15)
C7—C3—C4—N11.4 (2)C16—C12—C13—N21.7 (2)
C2—C3—C4—C51.2 (3)C11—C12—C13—C142.2 (3)
C7—C3—C4—C5−178.09 (17)C16—C12—C13—C14−177.37 (16)
C8—N1—C4—C30.4 (3)C17—N2—C13—C12−0.5 (3)
C8—N1—C4—C5179.93 (17)C17—N2—C13—C14178.58 (16)
C3—C4—C5—C6−0.9 (3)C12—C13—C14—C15−1.7 (3)
N1—C4—C5—C6179.55 (15)N2—C13—C14—C15179.27 (15)
C3—C4—C5—C9177.47 (16)C12—C13—C14—C18177.37 (16)
N1—C4—C5—C9−2.0 (3)N2—C13—C14—C18−1.7 (3)
C4—C5—C6—C1−0.2 (3)C13—C14—C15—C10−0.2 (3)
C9—C5—C6—C1−178.58 (16)C18—C14—C15—C10−179.25 (16)
C2—C1—C6—C51.1 (3)C11—C10—C15—C141.6 (3)
Cl1—C1—C6—C5−178.84 (14)Cl2—C10—C15—C14−177.76 (13)
C8—O2—C7—O1178.00 (15)C17—O5—C16—O4178.23 (15)
C8—O2—C7—C3−2.3 (2)C17—O5—C16—C12−2.5 (2)
C4—C3—C7—O1179.09 (18)C13—C12—C16—O4178.89 (18)
C2—C3—C7—O1−0.2 (3)C11—C12—C16—O4−0.7 (3)
C4—C3—C7—O2−0.5 (2)C13—C12—C16—O5−0.3 (2)
C2—C3—C7—O2−179.82 (15)C11—C12—C16—O5−179.91 (14)
C4—N1—C8—O3177.97 (17)C13—N2—C17—O6179.44 (17)
C4—N1—C8—O2−3.1 (3)C13—N2—C17—O5−2.1 (3)
C7—O2—C8—O3−176.85 (16)C16—O5—C17—O6−177.76 (16)
C7—O2—C8—N14.1 (2)C16—O5—C17—N23.6 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O6i0.881.992.846 (3)163
N2—H2A···O3ii0.882.012.850 (2)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O6i0.881.992.846 (3)163
N2—H2A⋯O3ii0.882.012.850 (2)160

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Further search for small molecular inactivants capable of eliciting respiratory mucosal immunogenicity by modifying Sendai virus core RNA.

Authors:  T Miyamae
Journal:  Microbiol Immunol       Date:  1996       Impact factor: 1.955

3.  The structure of 3'-O-anthraniloyladenosine, an analogue of the 3'-end of aminoacyl-tRNA.

Authors:  B Nawrot; W Milius; A Ejchart; S Limmer; M Sprinzl
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Aminoacyl-tRNA analogues; synthesis, purification and properties of 3'-anthraniloyl oligoribonucleotides.

Authors:  B Nawrot; M Sprinzl
Journal:  Nucleosides Nucleotides       Date:  1998-04

5.  1-Methyl-4H-3,1-benzoxazine-2,4(1H)dione.

Authors:  Nicholas P Deifel; Emily Cherney; David A Hunt; Benny C Chan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-20

6.  Synthesis of a fluorescent 7-methylguanosine analog and a fluorescence spectroscopic study of its reaction with wheatgerm cap binding proteins.

Authors:  J Ren; D J Goss
Journal:  Nucleic Acids Res       Date:  1996-09-15       Impact factor: 16.971

  6 in total

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