Literature DB >> 21579163

2-(4-Methoxy-phen-yl)-6-trifluoro-methyl-1H-pyrrolo[3,2-c]quinoline monohydrate.

Grzegorz Dutkiewicz, Anil N Mayekar, H S Yathirajan, B Narayana, Maciej Kubicki.   

Abstract

In the title compound, C(19)H(13)F(3)N(2)O·H(2)O, the phenyl and pyrroloquinoline ring system are close to coplanar [dihedral angle = 10.94 (4)°]. The meth-oxy group also is almost coplanar with the phenyl ring [5.4 (1)°]. In the crystal structure N-H⋯O(water) and water-quinoline O-H⋯N hydrogen bonds build up a supra-molecular chain-like arrangement along [001]. The remaining H atom of the water mol-ecule does not take part in classical hydrogen bonds. Instead, this O-H bond points toward the center of the phenyl ring of a neighbouring mol-ecule. Weak C-H⋯O and C-H⋯π inter-actions are also present.

Entities:  

Year:  2010        PMID: 21579163      PMCID: PMC2979020          DOI: 10.1107/S1600536810013644

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For O—H⋯π bonds, see: Atwood et al. (1991 ▶). For the graph-set description of hydrogen-bond systems, see: Bernstein et al. (1995 ▶). For the influence of substituents on the geometry of aromatic rings, see: Domenicano (1988 ▶). For a similar synthesis, see: Dutkiewicz et al. (2010 ▶). For related structures, see: Fan & Chen (1987 ▶); Lynch et al. (2001 ▶); Lynch & McClenaghan (2002 ▶).

Experimental

Crystal data

C19H13F3N2O·H2O M = 360.33 Monoclinic, a = 13.838 (1) Å b = 7.0432 (5) Å c = 17.758 (2) Å β = 102.743 (8)° V = 1688.2 (2) Å3 Z = 4 Cu Kα radiation μ = 0.99 mm−1 T = 295 K 0.4 × 0.2 × 0.1 mm

Data collection

Oxford Diffraction SuperNova (single source at offset) Atlas diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.340, T max = 1.000 5601 measured reflections 3304 independent reflections 2767 reflections with I > 2σ(I) R int = 0.013

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.128 S = 1.07 3304 reflections 296 parameters All H-atom parameters refined Δρmax = 0.19 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Stereochemical Workstation Operation Manual (Siemens, 1989 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810013644/im2190sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810013644/im2190Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H13F3N2O·H2OF(000) = 744
Mr = 360.33Dx = 1.418 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 3587 reflections
a = 13.838 (1) Åθ = 3.3–75.2°
b = 7.0432 (5) ŵ = 0.99 mm1
c = 17.758 (2) ÅT = 295 K
β = 102.743 (8)°Plate, colourless
V = 1688.2 (2) Å30.4 × 0.2 × 0.1 mm
Z = 4
Oxford Diffraction SuperNova (single source at offset) Atlas diffractometer3304 independent reflections
Radiation source: SuperNova (Cu) X-ray Source2767 reflections with I > 2σ(I)
mirrorRint = 0.013
Detector resolution: 5.2679 pixels mm-1θmax = 75.3°, θmin = 3.3°
ω scansh = −17→15
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −8→5
Tmin = 0.340, Tmax = 1.000l = −22→19
5601 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041All H-atom parameters refined
wR(F2) = 0.128w = 1/[σ2(Fo2) + (0.0763P)2 + 0.1838P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.009
3304 reflectionsΔρmax = 0.19 e Å3
296 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0039 (10)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.78945 (9)0.29250 (19)0.16925 (7)0.0550 (3)
C20.88353 (11)0.3157 (3)0.20243 (8)0.0585 (4)
H20.9306 (14)0.344 (3)0.1687 (10)0.071 (5)*
C30.92113 (10)0.3055 (2)0.28263 (8)0.0510 (3)
C40.85387 (10)0.26693 (18)0.32912 (7)0.0439 (3)
C50.75150 (10)0.24194 (18)0.29686 (8)0.0457 (3)
C60.67970 (11)0.2042 (2)0.34033 (9)0.0564 (4)
H60.6994 (13)0.196 (3)0.3971 (11)0.069 (5)*
C70.58263 (12)0.1830 (3)0.30423 (10)0.0684 (5)
H70.5303 (15)0.158 (3)0.3354 (11)0.080 (6)*
C80.55295 (12)0.1992 (3)0.22380 (10)0.0668 (4)
H80.4799 (16)0.183 (3)0.1986 (11)0.080 (6)*
C90.62098 (11)0.2358 (2)0.18026 (9)0.0564 (4)
C910.58623 (13)0.2559 (3)0.09412 (11)0.0790 (6)
F91A0.48893 (9)0.2321 (3)0.07127 (7)0.1234 (6)
F91B0.62834 (10)0.1319 (2)0.05506 (7)0.1118 (5)
F91C0.60642 (9)0.4282 (2)0.06897 (7)0.1051 (5)
C100.72299 (10)0.25735 (19)0.21521 (8)0.0474 (3)
N110.90552 (8)0.26236 (16)0.40374 (6)0.0451 (3)
H110.8790 (14)0.233 (2)0.4455 (11)0.065 (5)*
C121.00454 (10)0.2982 (2)0.40618 (8)0.0472 (3)
C131.01616 (10)0.3251 (2)0.33251 (8)0.0560 (4)
H131.0773 (14)0.354 (3)0.3175 (10)0.073 (5)*
C141.07851 (10)0.30124 (19)0.47970 (8)0.0469 (3)
C151.17510 (10)0.3653 (2)0.48185 (9)0.0557 (4)
H151.1925 (12)0.408 (3)0.4342 (10)0.067 (5)*
C161.24628 (11)0.3636 (2)0.54972 (9)0.0590 (4)
H161.3115 (14)0.409 (3)0.5519 (10)0.072 (5)*
C171.22347 (10)0.3006 (2)0.61766 (8)0.0528 (3)
C181.12861 (11)0.2388 (2)0.61730 (9)0.0547 (4)
H181.1117 (13)0.195 (2)0.6656 (11)0.064 (5)*
C191.05731 (10)0.2390 (2)0.54829 (8)0.0525 (3)
H190.9913 (14)0.193 (2)0.5499 (10)0.064 (5)*
O201.29904 (8)0.30707 (18)0.68177 (6)0.0660 (3)
C211.27720 (15)0.2604 (3)0.75398 (10)0.0669 (5)
H21A1.3371 (18)0.280 (3)0.7903 (13)0.090 (7)*
H21B1.2269 (17)0.345 (3)0.7653 (12)0.089 (6)*
H21C1.2575 (14)0.133 (3)0.7546 (11)0.078 (6)*
O1W0.81044 (9)0.12279 (19)0.51922 (6)0.0610 (3)
H1W10.7916 (17)0.165 (3)0.5623 (13)0.092 (7)*
H1W20.802 (2)0.008 (4)0.5170 (15)0.121 (10)*
U11U22U33U12U13U23
N10.0483 (6)0.0776 (8)0.0393 (6)0.0045 (6)0.0100 (5)−0.0023 (5)
C20.0472 (7)0.0893 (11)0.0408 (7)0.0035 (7)0.0132 (6)0.0002 (7)
C30.0445 (7)0.0674 (8)0.0416 (7)0.0037 (6)0.0105 (5)−0.0016 (6)
C40.0430 (7)0.0504 (7)0.0378 (6)0.0029 (5)0.0077 (5)−0.0014 (5)
C50.0448 (7)0.0500 (7)0.0414 (7)0.0012 (5)0.0076 (5)−0.0008 (5)
C60.0491 (8)0.0735 (9)0.0463 (7)−0.0054 (7)0.0100 (6)0.0035 (7)
C70.0489 (8)0.0975 (12)0.0597 (9)−0.0095 (8)0.0143 (7)0.0046 (9)
C80.0443 (8)0.0930 (12)0.0600 (9)−0.0049 (8)0.0046 (7)−0.0004 (8)
C90.0463 (8)0.0711 (9)0.0487 (8)0.0016 (6)0.0043 (6)−0.0033 (6)
C910.0496 (9)0.1272 (17)0.0557 (10)−0.0007 (10)0.0016 (7)−0.0078 (10)
F91A0.0517 (6)0.2442 (19)0.0643 (7)−0.0149 (8)−0.0089 (5)0.0008 (8)
F91B0.0891 (8)0.1757 (14)0.0664 (6)−0.0034 (8)0.0080 (6)−0.0496 (8)
F91C0.0881 (8)0.1500 (12)0.0710 (7)0.0129 (8)0.0040 (6)0.0398 (8)
C100.0460 (7)0.0539 (7)0.0415 (7)0.0029 (5)0.0080 (6)−0.0027 (5)
N110.0421 (6)0.0557 (6)0.0369 (5)0.0007 (4)0.0074 (4)0.0000 (4)
C120.0403 (6)0.0557 (7)0.0446 (7)0.0039 (5)0.0068 (5)−0.0019 (5)
C130.0410 (7)0.0829 (10)0.0446 (7)0.0022 (7)0.0108 (6)0.0002 (7)
C140.0412 (7)0.0537 (7)0.0444 (7)0.0042 (5)0.0061 (5)−0.0023 (5)
C150.0445 (7)0.0705 (9)0.0514 (8)−0.0003 (6)0.0090 (6)0.0010 (7)
C160.0412 (7)0.0743 (10)0.0596 (8)−0.0019 (7)0.0069 (6)−0.0005 (7)
C170.0430 (7)0.0580 (8)0.0515 (7)0.0063 (6)−0.0022 (6)−0.0032 (6)
C180.0495 (8)0.0667 (9)0.0457 (8)0.0007 (6)0.0054 (6)0.0027 (6)
C190.0415 (7)0.0682 (9)0.0459 (7)−0.0012 (6)0.0057 (6)−0.0004 (6)
O200.0488 (6)0.0855 (8)0.0553 (6)0.0016 (5)−0.0065 (5)−0.0003 (5)
C210.0688 (11)0.0694 (11)0.0532 (9)0.0023 (8)−0.0063 (8)−0.0012 (8)
O1W0.0696 (7)0.0718 (8)0.0449 (5)−0.0025 (6)0.0199 (5)0.0002 (5)
N1—C21.3155 (19)N11—H110.92 (2)
N1—C101.3800 (18)C12—C131.3662 (19)
C2—C31.4061 (19)C12—C141.4707 (18)
C2—H21.00 (2)C13—H130.96 (2)
C3—C41.4004 (19)C14—C191.385 (2)
C3—C131.4210 (19)C14—C151.403 (2)
C4—N111.3601 (17)C15—C161.378 (2)
C4—C51.4170 (19)C15—H150.977 (18)
C5—C61.411 (2)C16—C171.386 (2)
C5—C101.4202 (19)C16—H160.950 (19)
C6—C71.363 (2)C17—O201.3663 (16)
C6—H60.987 (19)C17—C181.382 (2)
C7—C81.401 (2)C18—C191.394 (2)
C7—H71.02 (2)C18—H180.988 (19)
C8—C91.368 (2)C19—H190.977 (19)
C8—H81.02 (2)O20—C211.419 (2)
C9—C101.419 (2)C21—H21A0.94 (2)
C9—C911.506 (2)C21—H21B0.97 (2)
C91—F91B1.327 (2)C21—H21C0.94 (2)
C91—F91A1.328 (2)O1W—H1W10.91 (2)
C91—F91C1.344 (3)O1W—H1W20.82 (3)
N11—C121.3845 (17)
C2—N1—C10118.69 (12)C4—N11—H11124.9 (11)
N1—C2—C3123.77 (13)C12—N11—H11125.7 (11)
N1—C2—H2117.9 (10)C13—C12—N11108.67 (12)
C3—C2—H2118.3 (10)C13—C12—C14129.95 (13)
C4—C3—C2117.49 (13)N11—C12—C14121.38 (12)
C4—C3—C13107.18 (12)C12—C13—C3107.17 (12)
C2—C3—C13135.34 (14)C12—C13—H13126.2 (11)
N11—C4—C3107.71 (12)C3—C13—H13126.6 (11)
N11—C4—C5130.89 (12)C19—C14—C15117.58 (13)
C3—C4—C5121.39 (12)C19—C14—C12122.34 (12)
C6—C5—C4124.31 (13)C15—C14—C12120.07 (13)
C6—C5—C10120.15 (13)C16—C15—C14120.92 (14)
C4—C5—C10115.54 (12)C16—C15—H15119.7 (10)
C7—C6—C5120.19 (14)C14—C15—H15119.4 (10)
C7—C6—H6119.7 (11)C15—C16—C17120.54 (14)
C5—C6—H6120.1 (11)C15—C16—H16121.5 (11)
C6—C7—C8120.51 (15)C17—C16—H16117.9 (11)
C6—C7—H7120.5 (11)O20—C17—C18124.48 (14)
C8—C7—H7119.0 (11)O20—C17—C16115.81 (13)
C9—C8—C7120.52 (15)C18—C17—C16119.70 (13)
C9—C8—H8120.9 (12)C17—C18—C19119.43 (14)
C7—C8—H8118.6 (12)C17—C18—H18120.1 (11)
C8—C9—C10121.00 (14)C19—C18—H18120.5 (11)
C8—C9—C91119.11 (14)C14—C19—C18121.83 (14)
C10—C9—C91119.88 (14)C14—C19—H19120.8 (10)
F91B—C91—F91A106.84 (17)C18—C19—H19117.4 (10)
F91B—C91—F91C105.85 (17)C17—O20—C21117.95 (13)
F91A—C91—F91C106.47 (18)O20—C21—H21A104.7 (14)
F91B—C91—C9112.99 (17)O20—C21—H21B110.5 (13)
F91A—C91—C9111.93 (16)H21A—C21—H21B109.4 (17)
F91C—C91—C9112.29 (16)O20—C21—H21C110.6 (12)
N1—C10—C5123.12 (13)H21A—C21—H21C110.3 (17)
N1—C10—C9119.26 (13)H21B—C21—H21C111.1 (18)
C5—C10—C9117.63 (13)H1W1—O1W—H1W2107 (2)
C4—N11—C12109.27 (11)
C10—N1—C2—C30.5 (3)C8—C9—C10—N1179.42 (16)
N1—C2—C3—C40.5 (3)C91—C9—C10—N1−1.4 (2)
N1—C2—C3—C13−179.65 (17)C8—C9—C10—C5−0.8 (2)
C2—C3—C4—N11179.62 (13)C91—C9—C10—C5178.39 (15)
C13—C3—C4—N11−0.26 (16)C3—C4—N11—C120.29 (15)
C2—C3—C4—C5−1.0 (2)C5—C4—N11—C12−179.04 (13)
C13—C3—C4—C5179.15 (13)C4—N11—C12—C13−0.21 (16)
N11—C4—C5—C6−0.2 (2)C4—N11—C12—C14−179.70 (12)
C3—C4—C5—C6−179.49 (14)N11—C12—C13—C30.05 (17)
N11—C4—C5—C10179.70 (13)C14—C12—C13—C3179.47 (14)
C3—C4—C5—C100.45 (19)C4—C3—C13—C120.12 (17)
C4—C5—C6—C7179.73 (15)C2—C3—C13—C12−179.72 (18)
C10—C5—C6—C7−0.2 (2)C13—C12—C14—C19−168.59 (16)
C5—C6—C7—C8−0.3 (3)N11—C12—C14—C1910.8 (2)
C6—C7—C8—C90.2 (3)C13—C12—C14—C1510.1 (2)
C7—C8—C9—C100.3 (3)N11—C12—C14—C15−170.52 (13)
C7—C8—C9—C91−178.87 (18)C19—C14—C15—C160.8 (2)
C8—C9—C91—F91B−121.27 (19)C12—C14—C15—C16−177.96 (14)
C10—C9—C91—F91B59.5 (2)C14—C15—C16—C17−0.8 (2)
C8—C9—C91—F91A−0.6 (3)C15—C16—C17—O20−179.21 (14)
C10—C9—C91—F91A−179.81 (17)C15—C16—C17—C180.0 (2)
C8—C9—C91—F91C119.09 (18)O20—C17—C18—C19179.80 (14)
C10—C9—C91—F91C−60.1 (2)C16—C17—C18—C190.6 (2)
C2—N1—C10—C5−1.0 (2)C15—C14—C19—C18−0.1 (2)
C2—N1—C10—C9178.74 (15)C12—C14—C19—C18178.60 (13)
C6—C5—C10—N1−179.48 (14)C17—C18—C19—C14−0.6 (2)
C4—C5—C10—N10.6 (2)C18—C17—O20—C21−4.8 (2)
C6—C5—C10—C90.7 (2)C16—C17—O20—C21174.42 (15)
C4—C5—C10—C9−179.21 (12)
CgA, CgB, CgD are the centroids of the C5–C9,C1C, N1,C2–C5,C1C and C14–C19 rings, respectively
D—H···AD—HH···AD···AD—H···A
C6—H6···O1W0.987 (19)2.42 (2)3.340 (2)155 (2)
N11—H11···O1W0.92 (2)1.94 (2)2.845 (2)167 (2)
C19—H19···O1W0.977 (19)2.49 (2)3.439 (2)164 (1)
C8—H8···O20i1.02 (2)2.45 (2)3.427 (2)160 (2)
O1W—H1W1···N1ii0.91 (2)1.93 (2)2.807 (2)161 (2)
C21—H21C···CgAiii0.94 (2)2.83 (2)3.550 (2)135 (2)
C21—H21B···CgBiv0.97 (2)2.72 (2)3.503 (2)138 (2)
O1W—H1W2···CgDiii0.82 (3)2.62 (3)3.310 (2)143 (2)
Table 1

Hydrogen-bond geometry (Å, °)

CgA, CgB, CgD are the centroids of the C5–C9,C1C, N1,C2–C5,C1C and C14–C19 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯O1W0.987 (19)2.42 (2)3.340 (2)155 (2)
N11—H11⋯O1W0.92 (2)1.94 (2)2.845 (2)167 (2)
C19—H19⋯O1W0.977 (19)2.49 (2)3.439 (2)164 (1)
C8—H8⋯O20i1.02 (2)2.45 (2)3.427 (2)160 (2)
O1W—H1W1⋯N1ii0.91 (2)1.93 (2)2.807 (2)161 (2)
C21—H21C⋯CgAiii0.94 (2)2.83 (2)3.550 (2)135 (2)
C21—H21B⋯CgBiv0.97 (2)2.72 (2)3.503 (2)138 (2)
O1W—H1W2⋯CgDiii0.82 (3)2.62 (3)3.310 (2)143 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  (E)-1-(4-Methyl-phen-yl)ethanone [8-(trifluoro-meth-yl)quinolin-4-yl]hydrazone.

Authors:  Grzegorz Dutkiewicz; Anil N Mayekar; H S Yathirajan; B Narayana; Maciej Kubicki
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-20
  3 in total

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