| Literature DB >> 21579146 |
Asmae Saber, Abdusalam Al Subari, Hafid Zouihri, El Mokhtar Essassi, Seik Weng Ng.
Abstract
In the mol-ecule of the title compound, C(12)class="Species">H(12)N(4)O, a C atom and an N atom of the <class="Chemical">span class="Chemical">benzimidazole fused-ring portion are part of a seven-membered ring; this ring adopts a boat-shaped conformation (with the fused-ring atoms representing the stern and the sp(3)-hybridized C atom the prow). The amino group is a hydrogen-bond donor to the imidazole group of an inversion-related mol-ecule, the pair of N-H⋯N hydrogen bonds giving rise to a hydrogen-bonded dimer.Entities:
Year: 2010 PMID: 21579146 PMCID: PMC2979075 DOI: 10.1107/S1600536810013498
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H12N4O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3188 reflections |
| θ = 2.4–24.8° | |
| µ = 0.09 mm−1 | |
| β = 104.314 (1)° | Prism, brown |
| 0.21 × 0.19 × 0.16 mm | |
| Bruker X8 APEXII diffractometer | 1823 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 29.4°, θmin = 2.4° |
| φ and ω scans | |
| 14670 measured reflections | |
| 3095 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3095 reflections | (Δ/σ)max < 0.001 |
| 160 parameters | Δρmax = 0.24 e Å−3 |
| 1 restraint | Δρmin = −0.19 e Å−3 |
| O1 | 0.40956 (19) | 0.51793 (12) | 0.14398 (13) | 0.0762 (5) | |
| N1 | 0.5626 (2) | 0.53766 (12) | 0.34574 (15) | 0.0574 (4) | |
| H1 | 0.486 (3) | 0.5002 (13) | 0.3696 (19) | 0.075 (7)* | |
| N2 | 0.95622 (19) | 0.59291 (9) | 0.32932 (14) | 0.0508 (4) | |
| N3 | 0.86966 (19) | 0.60627 (9) | 0.42759 (13) | 0.0475 (4) | |
| N4 | 0.6799 (2) | 0.58224 (10) | 0.55706 (13) | 0.0552 (4) | |
| C1 | 0.6977 (2) | 0.57641 (11) | 0.44172 (16) | 0.0488 (4) | |
| C2 | 0.5294 (2) | 0.55903 (14) | 0.22125 (17) | 0.0569 (5) | |
| C3 | 0.6491 (2) | 0.63705 (13) | 0.18892 (16) | 0.0551 (5) | |
| H3 | 0.6428 | 0.6886 | 0.2454 | 0.066* | |
| C4 | 0.8529 (2) | 0.60475 (11) | 0.21815 (17) | 0.0498 (4) | |
| C5 | 0.5699 (3) | 0.67076 (16) | 0.05638 (19) | 0.0797 (7) | |
| H5A | 0.6472 | 0.7202 | 0.0387 | 0.120* | |
| H5B | 0.4429 | 0.6926 | 0.0475 | 0.120* | |
| H5C | 0.5692 | 0.6210 | −0.0014 | 0.120* | |
| C6 | 0.9446 (3) | 0.58710 (16) | 0.11287 (19) | 0.0694 (6) | |
| H6A | 1.0719 | 0.5659 | 0.1463 | 0.104* | |
| H6B | 0.9466 | 0.6432 | 0.0667 | 0.104* | |
| H6C | 0.8742 | 0.5409 | 0.0580 | 0.104* | |
| C7 | 0.9748 (2) | 0.62947 (10) | 0.54769 (16) | 0.0486 (4) | |
| C8 | 1.1602 (3) | 0.65870 (13) | 0.59037 (19) | 0.0636 (5) | |
| H8 | 1.2399 | 0.6664 | 0.5369 | 0.076* | |
| C9 | 1.2194 (3) | 0.67573 (16) | 0.7180 (2) | 0.0790 (7) | |
| H9 | 1.3432 | 0.6950 | 0.7517 | 0.095* | |
| C10 | 1.0993 (4) | 0.66492 (16) | 0.7969 (2) | 0.0780 (7) | |
| H10 | 1.1444 | 0.6782 | 0.8819 | 0.094* | |
| C11 | 0.9147 (3) | 0.63502 (14) | 0.75350 (18) | 0.0653 (5) | |
| H11 | 0.8348 | 0.6279 | 0.8070 | 0.078* | |
| C12 | 0.8542 (3) | 0.61603 (11) | 0.62561 (16) | 0.0516 (4) |
| O1 | 0.0480 (8) | 0.1131 (12) | 0.0627 (9) | −0.0193 (7) | 0.0049 (6) | −0.0313 (8) |
| N1 | 0.0401 (8) | 0.0756 (10) | 0.0538 (9) | −0.0152 (7) | 0.0068 (7) | −0.0171 (7) |
| N2 | 0.0385 (7) | 0.0536 (8) | 0.0580 (9) | −0.0022 (6) | 0.0074 (7) | −0.0016 (6) |
| N3 | 0.0368 (7) | 0.0521 (8) | 0.0487 (8) | −0.0038 (6) | 0.0012 (6) | −0.0036 (6) |
| N4 | 0.0461 (8) | 0.0639 (9) | 0.0520 (9) | −0.0080 (7) | 0.0055 (7) | −0.0121 (7) |
| C1 | 0.0378 (8) | 0.0540 (9) | 0.0505 (9) | −0.0027 (7) | 0.0035 (7) | −0.0103 (7) |
| C2 | 0.0349 (9) | 0.0763 (12) | 0.0565 (10) | 0.0011 (8) | 0.0056 (8) | −0.0202 (9) |
| C3 | 0.0468 (10) | 0.0591 (10) | 0.0536 (10) | 0.0051 (8) | 0.0014 (8) | −0.0080 (8) |
| C4 | 0.0404 (9) | 0.0497 (9) | 0.0563 (10) | −0.0035 (7) | 0.0066 (8) | −0.0038 (7) |
| C5 | 0.0758 (15) | 0.0797 (14) | 0.0688 (13) | 0.0114 (11) | −0.0103 (11) | −0.0030 (11) |
| C6 | 0.0578 (12) | 0.0891 (15) | 0.0640 (12) | −0.0009 (10) | 0.0202 (10) | −0.0015 (10) |
| C7 | 0.0439 (9) | 0.0417 (8) | 0.0517 (9) | −0.0036 (7) | −0.0045 (8) | 0.0010 (7) |
| C8 | 0.0482 (10) | 0.0662 (11) | 0.0657 (11) | −0.0128 (8) | −0.0065 (9) | 0.0088 (9) |
| C9 | 0.0628 (13) | 0.0825 (14) | 0.0724 (14) | −0.0247 (11) | −0.0200 (11) | 0.0067 (11) |
| C10 | 0.0816 (16) | 0.0786 (14) | 0.0575 (12) | −0.0199 (11) | −0.0137 (11) | −0.0014 (10) |
| C11 | 0.0708 (13) | 0.0655 (11) | 0.0521 (10) | −0.0082 (10) | 0.0009 (9) | −0.0061 (8) |
| C12 | 0.0501 (10) | 0.0467 (9) | 0.0507 (9) | −0.0036 (7) | −0.0012 (8) | −0.0047 (7) |
| O1—C2 | 1.213 (2) | C5—H5B | 0.9600 |
| N1—C2 | 1.365 (2) | C5—H5C | 0.9600 |
| N1—C1 | 1.373 (2) | C6—H6A | 0.9600 |
| N1—H1 | 0.864 (9) | C6—H6B | 0.9600 |
| N2—C4 | 1.279 (2) | C6—H6C | 0.9600 |
| N2—N3 | 1.393 (2) | C7—C8 | 1.383 (2) |
| N3—C1 | 1.371 (2) | C7—C12 | 1.385 (3) |
| N3—C7 | 1.394 (2) | C8—C9 | 1.384 (3) |
| N4—C1 | 1.309 (2) | C8—H8 | 0.9300 |
| N4—C12 | 1.396 (2) | C9—C10 | 1.386 (3) |
| C2—C3 | 1.523 (3) | C9—H9 | 0.9300 |
| C3—C5 | 1.510 (3) | C10—C11 | 1.382 (3) |
| C3—C4 | 1.515 (2) | C10—H10 | 0.9300 |
| C3—H3 | 0.9800 | C11—C12 | 1.393 (2) |
| C4—C6 | 1.495 (3) | C11—H11 | 0.9300 |
| C5—H5A | 0.9600 | ||
| C2—N1—C1 | 126.41 (17) | H5A—C5—H5C | 109.5 |
| C2—N1—H1 | 118.6 (14) | H5B—C5—H5C | 109.5 |
| C1—N1—H1 | 114.7 (14) | C4—C6—H6A | 109.5 |
| C4—N2—N3 | 116.74 (14) | C4—C6—H6B | 109.5 |
| C1—N3—N2 | 130.27 (13) | H6A—C6—H6B | 109.5 |
| C1—N3—C7 | 105.84 (14) | C4—C6—H6C | 109.5 |
| N2—N3—C7 | 121.30 (14) | H6A—C6—H6C | 109.5 |
| C1—N4—C12 | 104.53 (15) | H6B—C6—H6C | 109.5 |
| N4—C1—N3 | 113.68 (14) | C8—C7—C12 | 123.37 (17) |
| N4—C1—N1 | 123.18 (16) | C8—C7—N3 | 131.12 (19) |
| N3—C1—N1 | 122.98 (16) | C12—C7—N3 | 105.50 (14) |
| O1—C2—N1 | 120.60 (19) | C7—C8—C9 | 115.6 (2) |
| O1—C2—C3 | 123.76 (18) | C7—C8—H8 | 122.2 |
| N1—C2—C3 | 115.63 (14) | C9—C8—H8 | 122.2 |
| C5—C3—C4 | 115.20 (18) | C8—C9—C10 | 121.89 (19) |
| C5—C3—C2 | 111.16 (15) | C8—C9—H9 | 119.1 |
| C4—C3—C2 | 108.05 (14) | C10—C9—H9 | 119.1 |
| C5—C3—H3 | 107.4 | C11—C10—C9 | 122.06 (19) |
| C4—C3—H3 | 107.4 | C11—C10—H10 | 119.0 |
| C2—C3—H3 | 107.4 | C9—C10—H10 | 119.0 |
| N2—C4—C6 | 116.53 (16) | C10—C11—C12 | 116.7 (2) |
| N2—C4—C3 | 124.01 (16) | C10—C11—H11 | 121.7 |
| C6—C4—C3 | 119.45 (16) | C12—C11—H11 | 121.7 |
| C3—C5—H5A | 109.5 | C7—C12—C11 | 120.37 (17) |
| C3—C5—H5B | 109.5 | C7—C12—N4 | 110.36 (15) |
| H5A—C5—H5B | 109.5 | C11—C12—N4 | 129.27 (19) |
| C3—C5—H5C | 109.5 | ||
| C4—N2—N3—C1 | 45.3 (2) | C5—C3—C4—C6 | −14.2 (2) |
| C4—N2—N3—C7 | −155.63 (15) | C2—C3—C4—C6 | 110.73 (19) |
| C12—N4—C1—N3 | −1.68 (19) | C1—N3—C7—C8 | 176.13 (18) |
| C12—N4—C1—N1 | 173.69 (17) | N2—N3—C7—C8 | 12.6 (3) |
| N2—N3—C1—N4 | 164.44 (16) | C1—N3—C7—C12 | −2.84 (17) |
| C7—N3—C1—N4 | 2.94 (19) | N2—N3—C7—C12 | −166.39 (14) |
| N2—N3—C1—N1 | −10.9 (3) | C12—C7—C8—C9 | −1.1 (3) |
| C7—N3—C1—N1 | −172.44 (16) | N3—C7—C8—C9 | −179.90 (18) |
| C2—N1—C1—N4 | 152.30 (18) | C7—C8—C9—C10 | −0.6 (3) |
| C2—N1—C1—N3 | −32.8 (3) | C8—C9—C10—C11 | 1.2 (4) |
| C1—N1—C2—O1 | 177.59 (18) | C9—C10—C11—C12 | 0.0 (3) |
| C1—N1—C2—C3 | −3.3 (3) | C8—C7—C12—C11 | 2.3 (3) |
| O1—C2—C3—C5 | 13.2 (3) | N3—C7—C12—C11 | −178.66 (16) |
| N1—C2—C3—C5 | −165.91 (17) | C8—C7—C12—N4 | −177.09 (16) |
| O1—C2—C3—C4 | −114.2 (2) | N3—C7—C12—N4 | 1.99 (18) |
| N1—C2—C3—C4 | 66.8 (2) | C10—C11—C12—C7 | −1.6 (3) |
| N3—N2—C4—C6 | −177.91 (15) | C10—C11—C12—N4 | 177.58 (18) |
| N3—N2—C4—C3 | 3.5 (2) | C1—N4—C12—C7 | −0.27 (19) |
| C5—C3—C4—N2 | 164.30 (17) | C1—N4—C12—C11 | −179.55 (19) |
| C2—C3—C4—N2 | −70.7 (2) |
| H··· | ||||
| N1—H1···N4i | 0.86 (1) | 2.01 (1) | 2.867 (2) | 174 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯N4i | 0.86 (1) | 2.01 (1) | 2.867 (2) | 174 (2) |
Symmetry code: (i) .