Literature DB >> 21579146

3,4-Dimethyl-1H-1,2,4-triazepino[2,3-a]benzimidazol-2(3H)-one.

Asmae Saber, Abdusalam Al Subari, Hafid Zouihri, El Mokhtar Essassi, Seik Weng Ng.   

Abstract

In the mol-ecule of the title compound, C(12)class="Species">H(12)N(4)O, a C atom and an N atom of the <class="Chemical">span class="Chemical">benzimidazole fused-ring portion are part of a seven-membered ring; this ring adopts a boat-shaped conformation (with the fused-ring atoms representing the stern and the sp(3)-hybridized C atom the prow). The amino group is a hydrogen-bond donor to the imidazole group of an inversion-related mol-ecule, the pair of N-H⋯N hydrogen bonds giving rise to a hydrogen-bonded dimer.

Entities:  

Year:  2010        PMID: 21579146      PMCID: PMC2979075          DOI: 10.1107/S1600536810013498

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Romano et al. (1988 ▶).

Experimental

Crystal data

C12<span class="Species">H12N4O M = 228.26 Monoclinic, a = 7.2899 (3) Å b = 14.4888 (5) Å c = 10.9932 (4) Å β = 104.314 (1)° V = 1125.08 (7) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.21 × 0.19 × 0.16 mm

Data collection

Bruker X8 APEXII diffractometer 14670 measured reflections 3095 independent reflections 1823 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.157 S = 1.01 3095 reflections 160 parameters 1 restraint <span class="Disease">H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810013498/si2255sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810013498/si2255Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N4OF(000) = 480
Mr = 228.26Dx = 1.348 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3188 reflections
a = 7.2899 (3) Åθ = 2.4–24.8°
b = 14.4888 (5) ŵ = 0.09 mm1
c = 10.9932 (4) ÅT = 293 K
β = 104.314 (1)°Prism, brown
V = 1125.08 (7) Å30.21 × 0.19 × 0.16 mm
Z = 4
Bruker X8 APEXII diffractometer1823 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.034
graphiteθmax = 29.4°, θmin = 2.4°
φ and ω scansh = −9→10
14670 measured reflectionsk = −20→19
3095 independent reflectionsl = −15→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.157H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0742P)2 + 0.1838P] where P = (Fo2 + 2Fc2)/3
3095 reflections(Δ/σ)max < 0.001
160 parametersΔρmax = 0.24 e Å3
1 restraintΔρmin = −0.19 e Å3
xyzUiso*/Ueq
O10.40956 (19)0.51793 (12)0.14398 (13)0.0762 (5)
N10.5626 (2)0.53766 (12)0.34574 (15)0.0574 (4)
H10.486 (3)0.5002 (13)0.3696 (19)0.075 (7)*
N20.95622 (19)0.59291 (9)0.32932 (14)0.0508 (4)
N30.86966 (19)0.60627 (9)0.42759 (13)0.0475 (4)
N40.6799 (2)0.58224 (10)0.55706 (13)0.0552 (4)
C10.6977 (2)0.57641 (11)0.44172 (16)0.0488 (4)
C20.5294 (2)0.55903 (14)0.22125 (17)0.0569 (5)
C30.6491 (2)0.63705 (13)0.18892 (16)0.0551 (5)
H30.64280.68860.24540.066*
C40.8529 (2)0.60475 (11)0.21815 (17)0.0498 (4)
C50.5699 (3)0.67076 (16)0.05638 (19)0.0797 (7)
H5A0.64720.72020.03870.120*
H5B0.44290.69260.04750.120*
H5C0.56920.6210−0.00140.120*
C60.9446 (3)0.58710 (16)0.11287 (19)0.0694 (6)
H6A1.07190.56590.14630.104*
H6B0.94660.64320.06670.104*
H6C0.87420.54090.05800.104*
C70.9748 (2)0.62947 (10)0.54769 (16)0.0486 (4)
C81.1602 (3)0.65870 (13)0.59037 (19)0.0636 (5)
H81.23990.66640.53690.076*
C91.2194 (3)0.67573 (16)0.7180 (2)0.0790 (7)
H91.34320.69500.75170.095*
C101.0993 (4)0.66492 (16)0.7969 (2)0.0780 (7)
H101.14440.67820.88190.094*
C110.9147 (3)0.63502 (14)0.75350 (18)0.0653 (5)
H110.83480.62790.80700.078*
C120.8542 (3)0.61603 (11)0.62561 (16)0.0516 (4)
U11U22U33U12U13U23
O10.0480 (8)0.1131 (12)0.0627 (9)−0.0193 (7)0.0049 (6)−0.0313 (8)
N10.0401 (8)0.0756 (10)0.0538 (9)−0.0152 (7)0.0068 (7)−0.0171 (7)
N20.0385 (7)0.0536 (8)0.0580 (9)−0.0022 (6)0.0074 (7)−0.0016 (6)
N30.0368 (7)0.0521 (8)0.0487 (8)−0.0038 (6)0.0012 (6)−0.0036 (6)
N40.0461 (8)0.0639 (9)0.0520 (9)−0.0080 (7)0.0055 (7)−0.0121 (7)
C10.0378 (8)0.0540 (9)0.0505 (9)−0.0027 (7)0.0035 (7)−0.0103 (7)
C20.0349 (9)0.0763 (12)0.0565 (10)0.0011 (8)0.0056 (8)−0.0202 (9)
C30.0468 (10)0.0591 (10)0.0536 (10)0.0051 (8)0.0014 (8)−0.0080 (8)
C40.0404 (9)0.0497 (9)0.0563 (10)−0.0035 (7)0.0066 (8)−0.0038 (7)
C50.0758 (15)0.0797 (14)0.0688 (13)0.0114 (11)−0.0103 (11)−0.0030 (11)
C60.0578 (12)0.0891 (15)0.0640 (12)−0.0009 (10)0.0202 (10)−0.0015 (10)
C70.0439 (9)0.0417 (8)0.0517 (9)−0.0036 (7)−0.0045 (8)0.0010 (7)
C80.0482 (10)0.0662 (11)0.0657 (11)−0.0128 (8)−0.0065 (9)0.0088 (9)
C90.0628 (13)0.0825 (14)0.0724 (14)−0.0247 (11)−0.0200 (11)0.0067 (11)
C100.0816 (16)0.0786 (14)0.0575 (12)−0.0199 (11)−0.0137 (11)−0.0014 (10)
C110.0708 (13)0.0655 (11)0.0521 (10)−0.0082 (10)0.0009 (9)−0.0061 (8)
C120.0501 (10)0.0467 (9)0.0507 (9)−0.0036 (7)−0.0012 (8)−0.0047 (7)
O1—C21.213 (2)C5—H5B0.9600
N1—C21.365 (2)C5—H5C0.9600
N1—C11.373 (2)C6—H6A0.9600
N1—H10.864 (9)C6—H6B0.9600
N2—C41.279 (2)C6—H6C0.9600
N2—N31.393 (2)C7—C81.383 (2)
N3—C11.371 (2)C7—C121.385 (3)
N3—C71.394 (2)C8—C91.384 (3)
N4—C11.309 (2)C8—H80.9300
N4—C121.396 (2)C9—C101.386 (3)
C2—C31.523 (3)C9—H90.9300
C3—C51.510 (3)C10—C111.382 (3)
C3—C41.515 (2)C10—H100.9300
C3—H30.9800C11—C121.393 (2)
C4—C61.495 (3)C11—H110.9300
C5—H5A0.9600
C2—N1—C1126.41 (17)H5A—C5—H5C109.5
C2—N1—H1118.6 (14)H5B—C5—H5C109.5
C1—N1—H1114.7 (14)C4—C6—H6A109.5
C4—N2—N3116.74 (14)C4—C6—H6B109.5
C1—N3—N2130.27 (13)H6A—C6—H6B109.5
C1—N3—C7105.84 (14)C4—C6—H6C109.5
N2—N3—C7121.30 (14)H6A—C6—H6C109.5
C1—N4—C12104.53 (15)H6B—C6—H6C109.5
N4—C1—N3113.68 (14)C8—C7—C12123.37 (17)
N4—C1—N1123.18 (16)C8—C7—N3131.12 (19)
N3—C1—N1122.98 (16)C12—C7—N3105.50 (14)
O1—C2—N1120.60 (19)C7—C8—C9115.6 (2)
O1—C2—C3123.76 (18)C7—C8—H8122.2
N1—C2—C3115.63 (14)C9—C8—H8122.2
C5—C3—C4115.20 (18)C8—C9—C10121.89 (19)
C5—C3—C2111.16 (15)C8—C9—H9119.1
C4—C3—C2108.05 (14)C10—C9—H9119.1
C5—C3—H3107.4C11—C10—C9122.06 (19)
C4—C3—H3107.4C11—C10—H10119.0
C2—C3—H3107.4C9—C10—H10119.0
N2—C4—C6116.53 (16)C10—C11—C12116.7 (2)
N2—C4—C3124.01 (16)C10—C11—H11121.7
C6—C4—C3119.45 (16)C12—C11—H11121.7
C3—C5—H5A109.5C7—C12—C11120.37 (17)
C3—C5—H5B109.5C7—C12—N4110.36 (15)
H5A—C5—H5B109.5C11—C12—N4129.27 (19)
C3—C5—H5C109.5
C4—N2—N3—C145.3 (2)C5—C3—C4—C6−14.2 (2)
C4—N2—N3—C7−155.63 (15)C2—C3—C4—C6110.73 (19)
C12—N4—C1—N3−1.68 (19)C1—N3—C7—C8176.13 (18)
C12—N4—C1—N1173.69 (17)N2—N3—C7—C812.6 (3)
N2—N3—C1—N4164.44 (16)C1—N3—C7—C12−2.84 (17)
C7—N3—C1—N42.94 (19)N2—N3—C7—C12−166.39 (14)
N2—N3—C1—N1−10.9 (3)C12—C7—C8—C9−1.1 (3)
C7—N3—C1—N1−172.44 (16)N3—C7—C8—C9−179.90 (18)
C2—N1—C1—N4152.30 (18)C7—C8—C9—C10−0.6 (3)
C2—N1—C1—N3−32.8 (3)C8—C9—C10—C111.2 (4)
C1—N1—C2—O1177.59 (18)C9—C10—C11—C120.0 (3)
C1—N1—C2—C3−3.3 (3)C8—C7—C12—C112.3 (3)
O1—C2—C3—C513.2 (3)N3—C7—C12—C11−178.66 (16)
N1—C2—C3—C5−165.91 (17)C8—C7—C12—N4−177.09 (16)
O1—C2—C3—C4−114.2 (2)N3—C7—C12—N41.99 (18)
N1—C2—C3—C466.8 (2)C10—C11—C12—C7−1.6 (3)
N3—N2—C4—C6−177.91 (15)C10—C11—C12—N4177.58 (18)
N3—N2—C4—C33.5 (2)C1—N4—C12—C7−0.27 (19)
C5—C3—C4—N2164.30 (17)C1—N4—C12—C11−179.55 (19)
C2—C3—C4—N2−70.7 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···N4i0.86 (1)2.01 (1)2.867 (2)174 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N4i0.86 (1)2.01 (1)2.867 (2)174 (2)

Symmetry code: (i) .

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