| Literature DB >> 21579124 |
Mei-Mei Zhang, Ke Yang, Xiang-Shan Wang.
Abstract
In the title compound, C(15)H(13)BrN(2)O, the pyrimidine ring adopts a skew boat conformation. The amino H atom forms an inter-molecular hydrogen bond with the carbonyl O atom of an adjacent mol-ecule, forming an inversion dimer. Another lone pair of electrons on the same carbonyl O atom acts as acceptor for another N-H⋯O inter-molecular hydrogen bond with a neighbouring mol-ecule, forming chains along the c axis.Entities:
Year: 2010 PMID: 21579124 PMCID: PMC2979070 DOI: 10.1107/S1600536810012584
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H13BrN2O | |
| Monoclinic, | Melting point = 494–496 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 7144 reflections | |
| θ = 2.8–27.1° | |
| µ = 3.06 mm−1 | |
| β = 101.719 (1)° | |
| Block, colourless | |
| 0.39 × 0.31 × 0.07 mm |
| Bruker SMART CCD area-detector diffractometer | 2369 independent reflections |
| Radiation source: fine-focus sealed tube | 2068 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 16905 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2369 reflections | (Δ/σ)max < 0.001 |
| 181 parameters | Δρmax = 0.89 e Å−3 |
| 2 restraints | Δρmin = −0.86 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| Br1 | 0.39200 (3) | 0.15530 (4) | 0.53610 (3) | 0.06231 (16) | |
| O1 | 0.12331 (16) | 0.5903 (2) | −0.02983 (14) | 0.0438 (5) | |
| N2 | 0.14117 (19) | 0.7611 (2) | 0.27005 (18) | 0.0356 (5) | |
| C2 | 0.1400 (2) | 0.6296 (3) | 0.0687 (2) | 0.0331 (6) | |
| C10 | 0.1575 (2) | 0.4972 (3) | 0.3192 (2) | 0.0305 (5) | |
| N1 | 0.07053 (18) | 0.5872 (3) | 0.13329 (17) | 0.0341 (5) | |
| C15 | 0.1462 (2) | 0.4648 (3) | 0.4258 (2) | 0.0423 (6) | |
| H15A | 0.0918 | 0.5136 | 0.4550 | 0.051* | |
| C8 | 0.2278 (2) | 0.7955 (3) | 0.2193 (2) | 0.0339 (6) | |
| C7 | 0.3078 (2) | 0.9022 (3) | 0.2615 (2) | 0.0430 (7) | |
| H7A | 0.3047 | 0.9501 | 0.3271 | 0.052* | |
| C11 | 0.2387 (2) | 0.4209 (3) | 0.2788 (2) | 0.0371 (6) | |
| H11A | 0.2471 | 0.4391 | 0.2071 | 0.045* | |
| C3 | 0.2318 (2) | 0.7284 (3) | 0.1177 (2) | 0.0342 (6) | |
| C9 | −0.0294 (2) | 0.6307 (3) | 0.2795 (2) | 0.0418 (6) | |
| H9A | −0.0752 | 0.6953 | 0.2278 | 0.050* | |
| H9B | −0.0224 | 0.6699 | 0.3525 | 0.050* | |
| H9C | −0.0633 | 0.5346 | 0.2760 | 0.050* | |
| C1 | 0.0863 (2) | 0.6182 (3) | 0.2514 (2) | 0.0312 (5) | |
| C13 | 0.2944 (2) | 0.2903 (3) | 0.4473 (2) | 0.0396 (6) | |
| C14 | 0.2138 (3) | 0.3620 (3) | 0.4894 (2) | 0.0462 (7) | |
| H14A | 0.2046 | 0.3415 | 0.5605 | 0.055* | |
| C4 | 0.3171 (2) | 0.7652 (3) | 0.0637 (2) | 0.0417 (6) | |
| H4A | 0.3202 | 0.7199 | −0.0030 | 0.050* | |
| C5 | 0.3972 (2) | 0.8676 (4) | 0.1070 (3) | 0.0494 (7) | |
| H5A | 0.4546 | 0.8906 | 0.0707 | 0.059* | |
| C12 | 0.3077 (2) | 0.3185 (3) | 0.3416 (2) | 0.0416 (6) | |
| H12A | 0.3623 | 0.2693 | 0.3129 | 0.050* | |
| C6 | 0.3913 (3) | 0.9364 (3) | 0.2060 (3) | 0.0500 (7) | |
| H6A | 0.4447 | 1.0067 | 0.2352 | 0.060* | |
| H2 | 0.146 (2) | 0.794 (3) | 0.3350 (12) | 0.042 (8)* | |
| H1 | 0.0147 (16) | 0.535 (3) | 0.103 (2) | 0.035 (7)* |
| Br1 | 0.0575 (2) | 0.0674 (3) | 0.0598 (2) | 0.01474 (16) | 0.00690 (16) | 0.02754 (17) |
| O1 | 0.0550 (12) | 0.0520 (12) | 0.0237 (10) | −0.0116 (9) | 0.0066 (8) | −0.0021 (8) |
| N2 | 0.0477 (13) | 0.0326 (11) | 0.0280 (12) | −0.0021 (10) | 0.0111 (10) | −0.0048 (9) |
| C2 | 0.0381 (14) | 0.0331 (13) | 0.0269 (13) | 0.0041 (11) | 0.0038 (10) | 0.0031 (10) |
| C10 | 0.0313 (12) | 0.0325 (13) | 0.0277 (13) | −0.0051 (10) | 0.0064 (10) | −0.0031 (10) |
| N1 | 0.0361 (12) | 0.0392 (12) | 0.0257 (11) | −0.0056 (10) | 0.0030 (9) | −0.0014 (9) |
| C15 | 0.0455 (16) | 0.0506 (17) | 0.0340 (15) | 0.0063 (13) | 0.0156 (12) | 0.0007 (13) |
| C8 | 0.0374 (14) | 0.0318 (13) | 0.0311 (14) | 0.0028 (11) | 0.0036 (11) | 0.0024 (11) |
| C7 | 0.0515 (17) | 0.0393 (15) | 0.0359 (15) | −0.0041 (13) | 0.0030 (12) | −0.0031 (12) |
| C11 | 0.0417 (14) | 0.0418 (15) | 0.0301 (14) | 0.0035 (12) | 0.0129 (11) | 0.0039 (11) |
| C3 | 0.0374 (14) | 0.0353 (13) | 0.0294 (13) | 0.0018 (11) | 0.0057 (11) | 0.0016 (11) |
| C9 | 0.0376 (14) | 0.0474 (16) | 0.0416 (16) | 0.0047 (12) | 0.0111 (12) | 0.0009 (13) |
| C1 | 0.0346 (13) | 0.0338 (13) | 0.0257 (13) | −0.0010 (10) | 0.0075 (10) | −0.0022 (10) |
| C13 | 0.0366 (14) | 0.0401 (15) | 0.0394 (15) | −0.0012 (12) | 0.0013 (11) | 0.0088 (12) |
| C14 | 0.0519 (17) | 0.0572 (18) | 0.0307 (15) | 0.0038 (14) | 0.0116 (13) | 0.0083 (13) |
| C4 | 0.0403 (15) | 0.0485 (16) | 0.0370 (15) | 0.0016 (13) | 0.0100 (12) | 0.0010 (12) |
| C5 | 0.0365 (15) | 0.0568 (19) | 0.056 (2) | −0.0031 (13) | 0.0116 (13) | 0.0052 (15) |
| C12 | 0.0381 (15) | 0.0444 (15) | 0.0438 (16) | 0.0054 (12) | 0.0120 (12) | 0.0021 (13) |
| C6 | 0.0428 (16) | 0.0477 (17) | 0.0556 (19) | −0.0108 (13) | 0.0011 (14) | 0.0004 (14) |
| Br1—C13 | 1.896 (3) | C7—H7A | 0.9300 |
| O1—C2 | 1.249 (3) | C11—C12 | 1.382 (4) |
| N2—C8 | 1.372 (3) | C11—H11A | 0.9300 |
| N2—C1 | 1.453 (3) | C3—C4 | 1.389 (4) |
| N2—H2 | 0.851 (10) | C9—C1 | 1.526 (4) |
| C2—N1 | 1.336 (3) | C9—H9A | 0.9600 |
| C2—C3 | 1.466 (4) | C9—H9B | 0.9600 |
| C10—C11 | 1.384 (4) | C9—H9C | 0.9600 |
| C10—C15 | 1.388 (4) | C13—C14 | 1.368 (4) |
| C10—C1 | 1.538 (3) | C13—C12 | 1.378 (4) |
| N1—C1 | 1.466 (3) | C14—H14A | 0.9300 |
| N1—H1 | 0.854 (10) | C4—C5 | 1.375 (4) |
| C15—C14 | 1.381 (4) | C4—H4A | 0.9300 |
| C15—H15A | 0.9300 | C5—C6 | 1.391 (4) |
| C8—C7 | 1.397 (4) | C5—H5A | 0.9300 |
| C8—C3 | 1.409 (4) | C12—H12A | 0.9300 |
| C7—C6 | 1.376 (4) | C6—H6A | 0.9300 |
| C8—N2—C1 | 120.2 (2) | H9A—C9—H9B | 109.5 |
| C8—N2—H2 | 116 (2) | C1—C9—H9C | 109.5 |
| C1—N2—H2 | 114 (2) | H9A—C9—H9C | 109.5 |
| O1—C2—N1 | 120.5 (2) | H9B—C9—H9C | 109.5 |
| O1—C2—C3 | 122.6 (2) | N2—C1—N1 | 107.0 (2) |
| N1—C2—C3 | 116.8 (2) | N2—C1—C9 | 108.4 (2) |
| C11—C10—C15 | 117.2 (2) | N1—C1—C9 | 107.6 (2) |
| C11—C10—C1 | 121.6 (2) | N2—C1—C10 | 110.9 (2) |
| C15—C10—C1 | 121.1 (2) | N1—C1—C10 | 110.8 (2) |
| C2—N1—C1 | 125.0 (2) | C9—C1—C10 | 112.0 (2) |
| C2—N1—H1 | 116.3 (19) | C14—C13—C12 | 120.6 (3) |
| C1—N1—H1 | 118.5 (19) | C14—C13—Br1 | 120.0 (2) |
| C14—C15—C10 | 121.6 (3) | C12—C13—Br1 | 119.4 (2) |
| C14—C15—H15A | 119.2 | C13—C14—C15 | 119.6 (3) |
| C10—C15—H15A | 119.2 | C13—C14—H14A | 120.2 |
| N2—C8—C7 | 122.1 (2) | C15—C14—H14A | 120.2 |
| N2—C8—C3 | 118.9 (2) | C5—C4—C3 | 121.1 (3) |
| C7—C8—C3 | 118.9 (2) | C5—C4—H4A | 119.5 |
| C6—C7—C8 | 120.1 (3) | C3—C4—H4A | 119.5 |
| C6—C7—H7A | 120.0 | C4—C5—C6 | 119.1 (3) |
| C8—C7—H7A | 120.0 | C4—C5—H5A | 120.4 |
| C12—C11—C10 | 122.0 (2) | C6—C5—H5A | 120.4 |
| C12—C11—H11A | 119.0 | C13—C12—C11 | 119.0 (3) |
| C10—C11—H11A | 119.0 | C13—C12—H12A | 120.5 |
| C4—C3—C8 | 119.6 (2) | C11—C12—H12A | 120.5 |
| C4—C3—C2 | 122.1 (2) | C7—C6—C5 | 121.1 (3) |
| C8—C3—C2 | 118.1 (2) | C7—C6—H6A | 119.4 |
| C1—C9—H9A | 109.5 | C5—C6—H6A | 119.4 |
| C1—C9—H9B | 109.5 | ||
| O1—C2—N1—C1 | 175.6 (2) | C2—N1—C1—N2 | 33.1 (3) |
| C3—C2—N1—C1 | −7.2 (4) | C2—N1—C1—C9 | 149.4 (2) |
| C11—C10—C15—C14 | 0.6 (4) | C2—N1—C1—C10 | −87.8 (3) |
| C1—C10—C15—C14 | −176.5 (3) | C11—C10—C1—N2 | −88.1 (3) |
| C1—N2—C8—C7 | −156.5 (2) | C15—C10—C1—N2 | 88.9 (3) |
| C1—N2—C8—C3 | 27.8 (4) | C11—C10—C1—N1 | 30.5 (3) |
| N2—C8—C7—C6 | −178.0 (3) | C15—C10—C1—N1 | −152.5 (2) |
| C3—C8—C7—C6 | −2.4 (4) | C11—C10—C1—C9 | 150.7 (2) |
| C15—C10—C11—C12 | −1.2 (4) | C15—C10—C1—C9 | −32.4 (3) |
| C1—C10—C11—C12 | 175.9 (2) | C12—C13—C14—C15 | −0.8 (5) |
| N2—C8—C3—C4 | 178.1 (2) | Br1—C13—C14—C15 | 177.2 (2) |
| C7—C8—C3—C4 | 2.4 (4) | C10—C15—C14—C13 | 0.4 (5) |
| N2—C8—C3—C2 | 2.7 (4) | C8—C3—C4—C5 | −0.8 (4) |
| C7—C8—C3—C2 | −173.1 (2) | C2—C3—C4—C5 | 174.5 (3) |
| O1—C2—C3—C4 | −11.0 (4) | C3—C4—C5—C6 | −0.8 (4) |
| N1—C2—C3—C4 | 171.9 (2) | C14—C13—C12—C11 | 0.3 (4) |
| O1—C2—C3—C8 | 164.4 (2) | Br1—C13—C12—C11 | −177.8 (2) |
| N1—C2—C3—C8 | −12.8 (3) | C10—C11—C12—C13 | 0.7 (4) |
| C8—N2—C1—N1 | −43.0 (3) | C8—C7—C6—C5 | 0.8 (5) |
| C8—N2—C1—C9 | −158.8 (2) | C4—C5—C6—C7 | 0.8 (5) |
| C8—N2—C1—C10 | 77.9 (3) |
| H··· | ||||
| N1—H1···O1i | 0.85 (1) | 2.08 (1) | 2.932 (3) | 179 (3) |
| N2—H2···O1ii | 0.85 (1) | 2.04 (1) | 2.870 (3) | 164 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1i | 0.85 (1) | 2.08 (1) | 2.932 (3) | 179 (3) |
| N2—H2⋯O1ii | 0.85 (1) | 2.04 (1) | 2.870 (3) | 164 (3) |
Symmetry codes: (i) ; (ii) .