| Literature DB >> 21579123 |
Abstract
In the cation of the title hydrated molecular salt, C(10)H(9)N(2) (+)·ClO(4) (-)·CH(3)OH, the dihedral angle formed by the pyridine rings is 28.82 (15)°. The crystal structure is stabilized by inter-molecular N-H⋯O and O-H⋯N hydrogen bonds and π-π stacking inter-actions, with centroid-to-centroid distances of 3.5913 (7) and 3.6526 (7) Å. Three O atoms of the perchlorate anion are disordered over two positions with refined occupancy factors of 0.649 (7):0.351 (7).Entities:
Year: 2010 PMID: 21579123 PMCID: PMC2979109 DOI: 10.1107/S1600536810012985
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H9N2+·ClO4−·CH4O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1803 reflections |
| θ = 3.1–27.5° | |
| µ = 0.31 mm−1 | |
| β = 92.07 (3)° | Block, colourless |
| 0.3 × 0.26 × 0.2 mm | |
| Rigaku SCXmini diffractometer | 2956 independent reflections |
| Radiation source: fine-focus sealed tube | 1803 reflections with |
| graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 13295 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2956 reflections | (Δ/σ)max < 0.001 |
| 201 parameters | Δρmax = 0.63 e Å−3 |
| 88 restraints | Δρmin = −0.60 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C1 | 0.7627 (6) | 0.5390 (3) | 0.5916 (4) | 0.0459 (11) | |
| H1A | 0.7704 | 0.5882 | 0.6356 | 0.055* | |
| C2 | 0.7575 (6) | 0.5504 (3) | 0.4801 (3) | 0.0395 (10) | |
| H2A | 0.7624 | 0.6061 | 0.4505 | 0.047* | |
| C3 | 0.7449 (6) | 0.4786 (3) | 0.4128 (3) | 0.0348 (9) | |
| C4 | 0.7326 (7) | 0.3979 (3) | 0.4625 (4) | 0.0464 (11) | |
| H4A | 0.7185 | 0.3478 | 0.4205 | 0.056* | |
| C5 | 0.7414 (7) | 0.3929 (3) | 0.5742 (4) | 0.0522 (12) | |
| H5A | 0.7360 | 0.3380 | 0.6060 | 0.063* | |
| C6 | 0.6765 (7) | 0.5634 (4) | 0.1258 (4) | 0.0564 (13) | |
| H6A | 0.6278 | 0.6121 | 0.0889 | 0.068* | |
| C7 | 0.6747 (7) | 0.5599 (3) | 0.2371 (4) | 0.0469 (11) | |
| H7A | 0.6270 | 0.6067 | 0.2763 | 0.056* | |
| C8 | 0.7450 (6) | 0.4859 (3) | 0.2922 (3) | 0.0370 (9) | |
| C9 | 0.8198 (7) | 0.4193 (3) | 0.2298 (4) | 0.0494 (11) | |
| H9A | 0.8702 | 0.3696 | 0.2637 | 0.059* | |
| C10 | 0.8194 (8) | 0.4267 (4) | 0.1186 (4) | 0.0565 (13) | |
| H10A | 0.8698 | 0.3820 | 0.0769 | 0.068* | |
| C11 | 0.1539 (10) | 0.6691 (3) | 0.1471 (5) | 0.0727 (17) | |
| H11A | 0.0837 | 0.6922 | 0.0844 | 0.087* | |
| H11B | 0.2789 | 0.6967 | 0.1541 | 0.087* | |
| H11C | 0.0823 | 0.6801 | 0.2114 | 0.087* | |
| N1 | 0.7476 (6) | 0.4972 (3) | 0.0702 (3) | 0.0547 (11) | |
| H1B | 0.7470 | 0.5003 | 0.0002 | 0.066* | |
| N2 | 0.7572 (5) | 0.4616 (3) | 0.6398 (3) | 0.0472 (9) | |
| O5 | 0.1785 (5) | 0.5786 (2) | 0.1341 (2) | 0.0537 (9) | |
| H5 | 0.2107 | 0.5599 | 0.2002 | 0.081* | |
| Cl1 | 0.32539 (19) | 0.19524 (7) | 0.64038 (10) | 0.0531 (4) | |
| O1 | 0.3132 (6) | 0.1030 (2) | 0.6349 (3) | 0.0634 (9) | |
| O2 | 0.335 (2) | 0.2182 (8) | 0.7540 (9) | 0.0659 (15) | 0.351 (7) |
| O3 | 0.1581 (17) | 0.2295 (7) | 0.5822 (11) | 0.0606 (9) | 0.351 (7) |
| O4 | 0.3801 (19) | 0.2310 (7) | 0.5350 (9) | 0.0601 (9) | 0.351 (7) |
| O2' | 0.4433 (12) | 0.2213 (4) | 0.7329 (6) | 0.0739 (13) | 0.649 (7) |
| O3' | 0.1388 (10) | 0.2337 (4) | 0.6422 (7) | 0.0717 (12) | 0.649 (7) |
| O4' | 0.4702 (11) | 0.2228 (4) | 0.5685 (6) | 0.0732 (12) | 0.649 (7) |
| C1 | 0.046 (3) | 0.048 (3) | 0.044 (3) | 0.001 (2) | 0.000 (2) | −0.008 (2) |
| C2 | 0.042 (2) | 0.036 (2) | 0.040 (2) | 0.0015 (18) | −0.0002 (18) | 0.0001 (17) |
| C3 | 0.032 (2) | 0.039 (2) | 0.034 (2) | 0.0004 (17) | 0.0020 (16) | 0.0025 (17) |
| C4 | 0.062 (3) | 0.036 (2) | 0.041 (2) | −0.005 (2) | −0.001 (2) | −0.0002 (18) |
| C5 | 0.065 (3) | 0.049 (3) | 0.042 (2) | −0.004 (2) | 0.003 (2) | 0.009 (2) |
| C6 | 0.050 (3) | 0.073 (3) | 0.046 (3) | −0.002 (3) | −0.001 (2) | 0.018 (3) |
| C7 | 0.049 (3) | 0.050 (3) | 0.042 (2) | 0.003 (2) | 0.004 (2) | 0.008 (2) |
| C8 | 0.034 (2) | 0.043 (2) | 0.033 (2) | −0.0030 (18) | 0.0007 (17) | 0.0013 (17) |
| C9 | 0.055 (3) | 0.051 (3) | 0.042 (3) | 0.005 (2) | 0.003 (2) | −0.005 (2) |
| C10 | 0.059 (3) | 0.073 (4) | 0.038 (3) | −0.002 (3) | 0.002 (2) | −0.011 (2) |
| C11 | 0.110 (5) | 0.051 (3) | 0.056 (3) | 0.008 (3) | −0.010 (3) | −0.003 (3) |
| N1 | 0.043 (2) | 0.089 (3) | 0.0322 (19) | −0.011 (2) | −0.0008 (17) | 0.004 (2) |
| N2 | 0.047 (2) | 0.059 (2) | 0.0356 (19) | −0.0010 (18) | 0.0017 (16) | 0.0006 (18) |
| O5 | 0.082 (2) | 0.0453 (18) | 0.0341 (16) | 0.0012 (16) | −0.0031 (15) | 0.0001 (13) |
| Cl1 | 0.0674 (8) | 0.0371 (6) | 0.0546 (7) | −0.0098 (5) | 0.0003 (5) | −0.0051 (5) |
| O1 | 0.093 (2) | 0.0369 (12) | 0.0603 (19) | −0.0094 (12) | 0.0059 (17) | −0.0059 (12) |
| O2 | 0.084 (3) | 0.055 (3) | 0.0592 (16) | −0.012 (3) | 0.000 (2) | −0.015 (2) |
| O3 | 0.0715 (16) | 0.0479 (16) | 0.0622 (17) | −0.0064 (14) | −0.0005 (14) | −0.0015 (16) |
| O4 | 0.0722 (17) | 0.0470 (16) | 0.0609 (15) | −0.0095 (16) | 0.0001 (15) | 0.0018 (14) |
| O2' | 0.084 (3) | 0.063 (2) | 0.074 (2) | −0.014 (3) | −0.010 (2) | −0.019 (2) |
| O3' | 0.0757 (18) | 0.062 (2) | 0.077 (3) | 0.0039 (18) | 0.004 (2) | −0.011 (2) |
| O4' | 0.074 (2) | 0.066 (2) | 0.080 (2) | −0.017 (2) | 0.007 (2) | 0.012 (2) |
| C1—N2 | 1.329 (6) | C9—H9A | 0.9300 |
| C1—C2 | 1.376 (6) | C10—N1 | 1.322 (7) |
| C1—H1A | 0.9300 | C10—H10A | 0.9300 |
| C2—C3 | 1.379 (6) | C11—O5 | 1.411 (6) |
| C2—H2A | 0.9300 | C11—H11A | 0.9600 |
| C3—C4 | 1.384 (6) | C11—H11B | 0.9600 |
| C3—C8 | 1.481 (5) | C11—H11C | 0.9600 |
| C4—C5 | 1.370 (6) | N1—H1B | 0.8600 |
| C4—H4A | 0.9300 | O5—H5 | 0.8804 |
| C5—N2 | 1.329 (6) | Cl1—O3' | 1.415 (7) |
| C5—H5A | 0.9300 | Cl1—O4' | 1.419 (6) |
| C6—N1 | 1.327 (7) | Cl1—O1 | 1.420 (3) |
| C6—C7 | 1.366 (7) | Cl1—O2' | 1.428 (6) |
| C6—H6A | 0.9300 | Cl1—O3 | 1.432 (12) |
| C7—C8 | 1.400 (6) | Cl1—O2 | 1.435 (11) |
| C7—H7A | 0.9300 | Cl1—O4 | 1.465 (11) |
| C8—C9 | 1.387 (6) | O3—O4 | 1.653 (19) |
| C9—C10 | 1.368 (6) | ||
| N2—C1—C2 | 123.8 (4) | O5—C11—H11B | 109.5 |
| N2—C1—H1A | 118.1 | H11A—C11—H11B | 109.5 |
| C2—C1—H1A | 118.1 | O5—C11—H11C | 109.5 |
| C1—C2—C3 | 119.3 (4) | H11A—C11—H11C | 109.5 |
| C1—C2—H2A | 120.3 | H11B—C11—H11C | 109.5 |
| C3—C2—H2A | 120.3 | C10—N1—C6 | 122.5 (4) |
| C2—C3—C4 | 117.2 (4) | C10—N1—H1B | 118.8 |
| C2—C3—C8 | 122.3 (4) | C6—N1—H1B | 118.8 |
| C4—C3—C8 | 120.6 (4) | C1—N2—C5 | 116.4 (4) |
| C5—C4—C3 | 119.3 (4) | C11—O5—H5 | 104.2 |
| C5—C4—H4A | 120.4 | O3'—Cl1—O4' | 122.9 (5) |
| C3—C4—H4A | 120.4 | O3'—Cl1—O1 | 111.4 (3) |
| N2—C5—C4 | 124.0 (4) | O4'—Cl1—O1 | 108.1 (3) |
| N2—C5—H5A | 118.0 | O3'—Cl1—O2' | 111.1 (4) |
| C4—C5—H5A | 118.0 | O4'—Cl1—O2' | 91.0 (6) |
| N1—C6—C7 | 120.0 (5) | O1—Cl1—O2' | 110.4 (3) |
| N1—C6—H6A | 120.0 | O4'—Cl1—O3 | 98.7 (7) |
| C7—C6—H6A | 120.0 | O1—Cl1—O3 | 107.3 (5) |
| C6—C7—C8 | 119.9 (5) | O2'—Cl1—O3 | 135.7 (6) |
| C6—C7—H7A | 120.1 | O3'—Cl1—O2 | 83.7 (6) |
| C8—C7—H7A | 120.1 | O4'—Cl1—O2 | 121.4 (7) |
| C9—C8—C7 | 117.5 (4) | O1—Cl1—O2 | 106.9 (5) |
| C9—C8—C3 | 120.5 (4) | O3—Cl1—O2 | 113.5 (7) |
| C7—C8—C3 | 122.0 (4) | O3'—Cl1—O4 | 96.9 (7) |
| C10—C9—C8 | 120.0 (5) | O1—Cl1—O4 | 110.4 (5) |
| C10—C9—H9A | 120.0 | O2'—Cl1—O4 | 116.0 (7) |
| C8—C9—H9A | 120.0 | O3—Cl1—O4 | 69.6 (8) |
| N1—C10—C9 | 120.1 (5) | O2—Cl1—O4 | 139.4 (7) |
| N1—C10—H10A | 119.9 | Cl1—O3—O4 | 56.1 (6) |
| C9—C10—H10A | 119.9 | Cl1—O4—O3 | 54.3 (6) |
| O5—C11—H11A | 109.5 |
| H··· | ||||
| O5—H5···N2i | 0.88 | 1.99 | 2.857 (5) | 167 |
| N1—H1B···O5ii | 0.86 | 2.12 | 2.825 (5) | 139 |
| N1—H1B···O1iii | 0.86 | 2.31 | 3.010 (5) | 138 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O5—H5⋯N2i | 0.88 | 1.99 | 2.857 (5) | 167 |
| N1—H1 | 0.86 | 2.12 | 2.825 (5) | 139 |
| N1—H1 | 0.86 | 2.31 | 3.010 (5) | 138 |
Symmetry codes: (i) ; (ii) ; (iii) .