Literature DB >> 21579123

4-(4-Pyrid-yl)pyridinium perchlorate methanol solvate.

Yu-Hua Gao1, De-Ming Wu.   

Abstract

In the cation of the title hydrated molecular salt, C(10)H(9)N(2) (+)·ClO(4) (-)·CH(3)OH, the dihedral angle formed by the pyridine rings is 28.82 (15)°. The crystal structure is stabilized by inter-molecular N-H⋯O and O-H⋯N hydrogen bonds and π-π stacking inter-actions, with centroid-to-centroid distances of 3.5913 (7) and 3.6526 (7) Å. Three O atoms of the perchlorate anion are disordered over two positions with refined occupancy factors of 0.649 (7):0.351 (7).

Entities:  

Year:  2010        PMID: 21579123      PMCID: PMC2979109          DOI: 10.1107/S1600536810012985

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For simple mol­ecular–ionic crystals containing organic cations and acid radicals, see: Katrusiak & Szafrański (1999 ▶, 2006 ▶). For the crystal structure of 4,4′-bipyridin-1-ium perchlorate di­hydrate, see: Zhang et al. (2008 ▶).

Experimental

Crystal data

C10H9N2 +·ClO4 −·CH4O M = 288.68 Monoclinic, a = 6.8822 (14) Å b = 15.362 (3) Å c = 12.254 (3) Å β = 92.07 (3)° V = 1294.7 (5) Å3 Z = 4 Mo Kα radiation μ = 0.31 mm−1 T = 293 K 0.3 × 0.26 × 0.2 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.62, T max = 0.81 13295 measured reflections 2956 independent reflections 1803 reflections with I > 2σ(I) R int = 0.067

Refinement

R[F 2 > 2σ(F 2)] = 0.079 wR(F 2) = 0.210 S = 1.00 2956 reflections 201 parameters 88 restraints H-atom parameters constrained Δρmax = 0.63 e Å−3 Δρmin = −0.60 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810012985/rz2430sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810012985/rz2430Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9N2+·ClO4·CH4OF(000) = 600
Mr = 288.68Dx = 1.481 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1803 reflections
a = 6.8822 (14) Åθ = 3.1–27.5°
b = 15.362 (3) ŵ = 0.31 mm1
c = 12.254 (3) ÅT = 293 K
β = 92.07 (3)°Block, colourless
V = 1294.7 (5) Å30.3 × 0.26 × 0.2 mm
Z = 4
Rigaku SCXmini diffractometer2956 independent reflections
Radiation source: fine-focus sealed tube1803 reflections with I > 2σ(I)
graphiteRint = 0.067
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.1°
ω scansh = −8→8
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −19→19
Tmin = 0.62, Tmax = 0.81l = −15→15
13295 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.079Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.210H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0767P)2 + 2.5927P] where P = (Fo2 + 2Fc2)/3
2956 reflections(Δ/σ)max < 0.001
201 parametersΔρmax = 0.63 e Å3
88 restraintsΔρmin = −0.60 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.7627 (6)0.5390 (3)0.5916 (4)0.0459 (11)
H1A0.77040.58820.63560.055*
C20.7575 (6)0.5504 (3)0.4801 (3)0.0395 (10)
H2A0.76240.60610.45050.047*
C30.7449 (6)0.4786 (3)0.4128 (3)0.0348 (9)
C40.7326 (7)0.3979 (3)0.4625 (4)0.0464 (11)
H4A0.71850.34780.42050.056*
C50.7414 (7)0.3929 (3)0.5742 (4)0.0522 (12)
H5A0.73600.33800.60600.063*
C60.6765 (7)0.5634 (4)0.1258 (4)0.0564 (13)
H6A0.62780.61210.08890.068*
C70.6747 (7)0.5599 (3)0.2371 (4)0.0469 (11)
H7A0.62700.60670.27630.056*
C80.7450 (6)0.4859 (3)0.2922 (3)0.0370 (9)
C90.8198 (7)0.4193 (3)0.2298 (4)0.0494 (11)
H9A0.87020.36960.26370.059*
C100.8194 (8)0.4267 (4)0.1186 (4)0.0565 (13)
H10A0.86980.38200.07690.068*
C110.1539 (10)0.6691 (3)0.1471 (5)0.0727 (17)
H11A0.08370.69220.08440.087*
H11B0.27890.69670.15410.087*
H11C0.08230.68010.21140.087*
N10.7476 (6)0.4972 (3)0.0702 (3)0.0547 (11)
H1B0.74700.50030.00020.066*
N20.7572 (5)0.4616 (3)0.6398 (3)0.0472 (9)
O50.1785 (5)0.5786 (2)0.1341 (2)0.0537 (9)
H50.21070.55990.20020.081*
Cl10.32539 (19)0.19524 (7)0.64038 (10)0.0531 (4)
O10.3132 (6)0.1030 (2)0.6349 (3)0.0634 (9)
O20.335 (2)0.2182 (8)0.7540 (9)0.0659 (15)0.351 (7)
O30.1581 (17)0.2295 (7)0.5822 (11)0.0606 (9)0.351 (7)
O40.3801 (19)0.2310 (7)0.5350 (9)0.0601 (9)0.351 (7)
O2'0.4433 (12)0.2213 (4)0.7329 (6)0.0739 (13)0.649 (7)
O3'0.1388 (10)0.2337 (4)0.6422 (7)0.0717 (12)0.649 (7)
O4'0.4702 (11)0.2228 (4)0.5685 (6)0.0732 (12)0.649 (7)
U11U22U33U12U13U23
C10.046 (3)0.048 (3)0.044 (3)0.001 (2)0.000 (2)−0.008 (2)
C20.042 (2)0.036 (2)0.040 (2)0.0015 (18)−0.0002 (18)0.0001 (17)
C30.032 (2)0.039 (2)0.034 (2)0.0004 (17)0.0020 (16)0.0025 (17)
C40.062 (3)0.036 (2)0.041 (2)−0.005 (2)−0.001 (2)−0.0002 (18)
C50.065 (3)0.049 (3)0.042 (2)−0.004 (2)0.003 (2)0.009 (2)
C60.050 (3)0.073 (3)0.046 (3)−0.002 (3)−0.001 (2)0.018 (3)
C70.049 (3)0.050 (3)0.042 (2)0.003 (2)0.004 (2)0.008 (2)
C80.034 (2)0.043 (2)0.033 (2)−0.0030 (18)0.0007 (17)0.0013 (17)
C90.055 (3)0.051 (3)0.042 (3)0.005 (2)0.003 (2)−0.005 (2)
C100.059 (3)0.073 (4)0.038 (3)−0.002 (3)0.002 (2)−0.011 (2)
C110.110 (5)0.051 (3)0.056 (3)0.008 (3)−0.010 (3)−0.003 (3)
N10.043 (2)0.089 (3)0.0322 (19)−0.011 (2)−0.0008 (17)0.004 (2)
N20.047 (2)0.059 (2)0.0356 (19)−0.0010 (18)0.0017 (16)0.0006 (18)
O50.082 (2)0.0453 (18)0.0341 (16)0.0012 (16)−0.0031 (15)0.0001 (13)
Cl10.0674 (8)0.0371 (6)0.0546 (7)−0.0098 (5)0.0003 (5)−0.0051 (5)
O10.093 (2)0.0369 (12)0.0603 (19)−0.0094 (12)0.0059 (17)−0.0059 (12)
O20.084 (3)0.055 (3)0.0592 (16)−0.012 (3)0.000 (2)−0.015 (2)
O30.0715 (16)0.0479 (16)0.0622 (17)−0.0064 (14)−0.0005 (14)−0.0015 (16)
O40.0722 (17)0.0470 (16)0.0609 (15)−0.0095 (16)0.0001 (15)0.0018 (14)
O2'0.084 (3)0.063 (2)0.074 (2)−0.014 (3)−0.010 (2)−0.019 (2)
O3'0.0757 (18)0.062 (2)0.077 (3)0.0039 (18)0.004 (2)−0.011 (2)
O4'0.074 (2)0.066 (2)0.080 (2)−0.017 (2)0.007 (2)0.012 (2)
C1—N21.329 (6)C9—H9A0.9300
C1—C21.376 (6)C10—N11.322 (7)
C1—H1A0.9300C10—H10A0.9300
C2—C31.379 (6)C11—O51.411 (6)
C2—H2A0.9300C11—H11A0.9600
C3—C41.384 (6)C11—H11B0.9600
C3—C81.481 (5)C11—H11C0.9600
C4—C51.370 (6)N1—H1B0.8600
C4—H4A0.9300O5—H50.8804
C5—N21.329 (6)Cl1—O3'1.415 (7)
C5—H5A0.9300Cl1—O4'1.419 (6)
C6—N11.327 (7)Cl1—O11.420 (3)
C6—C71.366 (7)Cl1—O2'1.428 (6)
C6—H6A0.9300Cl1—O31.432 (12)
C7—C81.400 (6)Cl1—O21.435 (11)
C7—H7A0.9300Cl1—O41.465 (11)
C8—C91.387 (6)O3—O41.653 (19)
C9—C101.368 (6)
N2—C1—C2123.8 (4)O5—C11—H11B109.5
N2—C1—H1A118.1H11A—C11—H11B109.5
C2—C1—H1A118.1O5—C11—H11C109.5
C1—C2—C3119.3 (4)H11A—C11—H11C109.5
C1—C2—H2A120.3H11B—C11—H11C109.5
C3—C2—H2A120.3C10—N1—C6122.5 (4)
C2—C3—C4117.2 (4)C10—N1—H1B118.8
C2—C3—C8122.3 (4)C6—N1—H1B118.8
C4—C3—C8120.6 (4)C1—N2—C5116.4 (4)
C5—C4—C3119.3 (4)C11—O5—H5104.2
C5—C4—H4A120.4O3'—Cl1—O4'122.9 (5)
C3—C4—H4A120.4O3'—Cl1—O1111.4 (3)
N2—C5—C4124.0 (4)O4'—Cl1—O1108.1 (3)
N2—C5—H5A118.0O3'—Cl1—O2'111.1 (4)
C4—C5—H5A118.0O4'—Cl1—O2'91.0 (6)
N1—C6—C7120.0 (5)O1—Cl1—O2'110.4 (3)
N1—C6—H6A120.0O4'—Cl1—O398.7 (7)
C7—C6—H6A120.0O1—Cl1—O3107.3 (5)
C6—C7—C8119.9 (5)O2'—Cl1—O3135.7 (6)
C6—C7—H7A120.1O3'—Cl1—O283.7 (6)
C8—C7—H7A120.1O4'—Cl1—O2121.4 (7)
C9—C8—C7117.5 (4)O1—Cl1—O2106.9 (5)
C9—C8—C3120.5 (4)O3—Cl1—O2113.5 (7)
C7—C8—C3122.0 (4)O3'—Cl1—O496.9 (7)
C10—C9—C8120.0 (5)O1—Cl1—O4110.4 (5)
C10—C9—H9A120.0O2'—Cl1—O4116.0 (7)
C8—C9—H9A120.0O3—Cl1—O469.6 (8)
N1—C10—C9120.1 (5)O2—Cl1—O4139.4 (7)
N1—C10—H10A119.9Cl1—O3—O456.1 (6)
C9—C10—H10A119.9Cl1—O4—O354.3 (6)
O5—C11—H11A109.5
D—H···AD—HH···AD···AD—H···A
O5—H5···N2i0.881.992.857 (5)167
N1—H1B···O5ii0.862.122.825 (5)139
N1—H1B···O1iii0.862.313.010 (5)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5⋯N2i0.881.992.857 (5)167
N1—H1B⋯O5ii0.862.122.825 (5)139
N1—H1B⋯O1iii0.862.313.010 (5)138

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

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