Literature DB >> 21579093

1-(Biphenyl-4-ylmethyl-idene)thio-semicarbazide monohydrate.

Rafael Mendoza-Meroño1, Laura Menéndez-Taboada, Eva Fernández-Zapico, Santiago García-Granda.   

Abstract

In the title compound, C(14)H(13)N(3)S·H(2)O, the thio-semicarbazide group is nearly planar, with a maximum deviation of 0.072 (2) Å from the ideal least-squares plane, and shows an E conformation. In the crystal packing, the water mol-ecules are involved in an extensive inter-molecular N-H⋯O hydrogen-bond network, assisted by O-H⋯S inter-actions, which link the independent mol-ecules into chains extended along b axis. An intra-molecular hydrogen N-H⋯N bond helps to stabilize the mol-ecular conformation.

Entities:  

Year:  2010        PMID: 21579093      PMCID: PMC2979168          DOI: 10.1107/S1600536810011888

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity and potential medical applications of thio­semicarbazides, see: West et al. (1991 ▶). For thio­semicarbazides as ligands, see: Kowol et al. (2007 ▶).

Experimental

Crystal data

C14H13N3H2O M = 273.36 Monoclinic, a = 14.428 (5) Å b = 6.350 (5) Å c = 15.276 (4) Å β = 99.750 (5)° V = 1379.3 (12) Å3 Z = 4 Cu Kα radiation μ = 2.05 mm−1 T = 293 K 0.28 × 0.22 × 0.19 mm

Data collection

Oxford Diffraction Xcalibur Gemini S diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.659, T max = 1.000 8823 measured reflections 2652 independent reflections 2208 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.145 S = 1.12 2652 reflections 233 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.32 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810011888/vm2023sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810011888/vm2023Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H13N3S·H2OF(000) = 576
Mr = 273.36Dx = 1.316 Mg m3
Monoclinic, P21/cMelting point: 475 K
Hall symbol: -P 2ybcCu Kα radiation, λ = 1.54180 Å
a = 14.428 (5) ÅCell parameters from 3594 reflections
b = 6.350 (5) Åθ = 3.9–71.2°
c = 15.276 (4) ŵ = 2.05 mm1
β = 99.750 (5)°T = 293 K
V = 1379.3 (12) Å3Needle, yellow
Z = 40.28 × 0.22 × 0.19 mm
Oxford Diffraction Xcalibur Gemini S diffractometer2652 independent reflections
Radiation source: Enhance (Cu) X-ray Source2208 reflections with I > 2σ(I)
graphiteRint = 0.035
Detector resolution: 10.2673 pixels mm-1θmax = 71.3°, θmin = 5.9°
ω scansh = −17→17
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −6→7
Tmin = 0.659, Tmax = 1.000l = −17→18
8823 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.145w = 1/[σ2(Fo2) + (0.0724P)2 + 0.4128P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max = 0.001
2652 reflectionsΔρmax = 0.34 e Å3
233 parametersΔρmin = −0.32 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0022 (5)
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.34.9 (release 08-12-2009 CrysAlis171 .NET)(compiled Dec 8 2009,17:31:18). Empirical absorption correction using spherical harmonics,implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S11.03245 (4)−0.35800 (9)0.35948 (4)0.0569 (2)
N20.87783 (13)−0.1308 (3)0.31541 (13)0.0506 (5)
N10.79162 (12)−0.0958 (3)0.26420 (12)0.0512 (5)
O10.95339 (19)0.1981 (4)0.42955 (18)0.0826 (7)
C90.62409 (16)0.3346 (4)0.22359 (17)0.0554 (6)
C140.92353 (15)−0.3091 (4)0.30268 (15)0.0518 (5)
N30.87879 (17)−0.4428 (4)0.24280 (16)0.0687 (6)
C70.48473 (14)0.2361 (4)0.12056 (15)0.0490 (5)
C130.75391 (15)0.0839 (4)0.27165 (16)0.0526 (5)
C100.66283 (15)0.1342 (3)0.21913 (15)0.0506 (5)
C110.61170 (16)−0.0131 (4)0.16261 (17)0.0546 (5)
C80.53638 (16)0.3841 (4)0.17552 (16)0.0543 (6)
C60.39026 (15)0.2860 (4)0.07042 (15)0.0516 (5)
C120.52453 (16)0.0367 (4)0.11508 (16)0.0545 (6)
C50.36951 (18)0.4859 (4)0.03497 (19)0.0639 (6)
C10.31911 (17)0.1354 (4)0.05726 (18)0.0609 (6)
C20.22957 (19)0.1843 (5)0.01258 (19)0.0707 (7)
C40.2796 (2)0.5341 (5)−0.0100 (2)0.0748 (8)
C30.2100 (2)0.3841 (6)−0.02047 (18)0.0728 (8)
H80.5121 (18)0.525 (5)0.1814 (18)0.063 (7)*
H120.4912 (18)−0.064 (4)0.0746 (17)0.060 (7)*
H50.421 (2)0.590 (5)0.041 (2)0.078 (9)*
H10.3329 (17)−0.005 (4)0.0831 (18)0.060 (7)*
H90.6583 (17)0.436 (4)0.2642 (17)0.057 (7)*
H130.7819 (17)0.187 (4)0.3128 (17)0.052 (6)*
H110.638 (2)−0.147 (4)0.1583 (19)0.066 (8)*
H30.146 (2)0.420 (5)−0.053 (2)0.085 (9)*
H40.267 (2)0.679 (6)−0.036 (2)0.094 (10)*
H20.180 (2)0.076 (6)0.004 (2)0.094 (11)*
H140.907 (2)−0.033 (5)0.3552 (19)0.066 (8)*
H150.825 (2)−0.392 (5)0.211 (2)0.072 (8)*
H160.907 (2)−0.553 (6)0.229 (2)0.082 (9)*
H170.975 (3)0.304 (8)0.404 (3)0.129 (16)*
H180.959 (3)0.210 (7)0.481 (3)0.120 (17)*
U11U22U33U12U13U23
S10.0468 (3)0.0545 (4)0.0666 (4)0.0023 (2)0.0016 (3)0.0058 (3)
N20.0410 (9)0.0526 (10)0.0555 (11)0.0008 (8)0.0005 (8)−0.0025 (8)
N10.0417 (9)0.0596 (11)0.0509 (10)0.0024 (8)0.0035 (7)−0.0017 (8)
O10.1079 (17)0.0666 (12)0.0679 (14)−0.0285 (12)−0.0003 (12)−0.0015 (11)
C90.0459 (12)0.0556 (13)0.0621 (14)−0.0015 (10)0.0020 (10)−0.0123 (11)
C140.0498 (12)0.0509 (12)0.0562 (13)−0.0018 (9)0.0134 (10)0.0014 (10)
N30.0610 (13)0.0635 (14)0.0759 (15)0.0105 (11)−0.0048 (11)−0.0176 (11)
C70.0431 (10)0.0533 (12)0.0500 (11)−0.0014 (9)0.0066 (9)−0.0015 (9)
C130.0444 (11)0.0564 (13)0.0560 (13)−0.0008 (10)0.0052 (9)−0.0058 (11)
C100.0422 (11)0.0541 (12)0.0552 (12)−0.0006 (9)0.0073 (9)−0.0027 (10)
C110.0490 (12)0.0500 (12)0.0630 (14)0.0034 (10)0.0046 (10)−0.0039 (10)
C80.0485 (12)0.0516 (13)0.0614 (14)0.0038 (10)0.0057 (10)−0.0061 (10)
C60.0457 (11)0.0598 (13)0.0490 (12)0.0023 (10)0.0067 (9)−0.0032 (10)
C120.0491 (12)0.0536 (13)0.0577 (13)−0.0037 (10)0.0004 (10)−0.0081 (10)
C50.0558 (14)0.0617 (15)0.0714 (16)0.0053 (12)0.0030 (11)0.0020 (12)
C10.0488 (12)0.0681 (16)0.0627 (15)−0.0034 (11)0.0007 (10)0.0016 (12)
C20.0510 (14)0.092 (2)0.0656 (16)−0.0049 (14)0.0009 (11)−0.0072 (14)
C40.0709 (17)0.0776 (19)0.0721 (18)0.0199 (15)0.0007 (13)0.0035 (14)
C30.0559 (15)0.102 (2)0.0566 (15)0.0155 (15)−0.0005 (11)−0.0039 (14)
S1—C141.690 (2)C13—H130.95 (3)
N2—C141.341 (3)C10—C111.396 (3)
N2—N11.371 (3)C11—C121.378 (3)
N2—H140.92 (3)C11—H110.94 (3)
N1—C131.278 (3)C8—H80.97 (3)
O1—H170.86 (5)C6—C11.393 (4)
O1—H180.77 (5)C6—C51.393 (4)
C9—C81.387 (3)C12—H120.96 (3)
C9—C101.397 (3)C5—C41.396 (4)
C9—H90.97 (3)C5—H50.98 (3)
C14—N31.332 (3)C1—C21.390 (4)
N3—H150.90 (3)C1—H10.98 (3)
N3—H160.86 (4)C2—C31.377 (5)
C7—C81.390 (3)C2—H20.98 (4)
C7—C121.399 (3)C4—C31.374 (5)
C7—C61.480 (3)C4—H41.01 (4)
C13—C101.454 (3)C3—H30.99 (3)
C14—N2—N1118.4 (2)C10—C11—H11118.6 (17)
C14—N2—H14119.4 (17)C9—C8—C7121.0 (2)
N1—N2—H14122.1 (17)C9—C8—H8118.1 (16)
C13—N1—N2116.9 (2)C7—C8—H8120.9 (16)
H17—O1—H18113 (4)C1—C6—C5117.7 (2)
C8—C9—C10121.1 (2)C1—C6—C7121.3 (2)
C8—C9—H9120.6 (15)C5—C6—C7121.0 (2)
C10—C9—H9118.1 (15)C11—C12—C7121.5 (2)
N3—C14—N2116.4 (2)C11—C12—H12120.0 (16)
N3—C14—S1122.39 (19)C7—C12—H12118.4 (16)
N2—C14—S1121.19 (18)C6—C5—C4120.8 (3)
C14—N3—H15114.4 (19)C6—C5—H5118.1 (18)
C14—N3—H16120 (2)C4—C5—H5121.1 (18)
H15—N3—H16124 (3)C2—C1—C6121.2 (3)
C8—C7—C12117.7 (2)C2—C1—H1120.6 (15)
C8—C7—C6121.3 (2)C6—C1—H1118.1 (15)
C12—C7—C6121.0 (2)C3—C2—C1120.1 (3)
N1—C13—C10120.4 (2)C3—C2—H2120 (2)
N1—C13—H13122.5 (15)C1—C2—H2120 (2)
C10—C13—H13117.1 (15)C3—C4—C5120.4 (3)
C11—C10—C9117.8 (2)C3—C4—H4121 (2)
C11—C10—C13121.9 (2)C5—C4—H4119 (2)
C9—C10—C13120.3 (2)C4—C3—C2119.7 (3)
C12—C11—C10120.8 (2)C4—C3—H3119.5 (19)
C12—C11—H11120.6 (17)C2—C3—H3120.8 (19)
C14—N2—N1—C13−173.4 (2)C12—C7—C6—C135.4 (3)
N1—N2—C14—N3−2.6 (3)C8—C7—C6—C536.1 (3)
N1—N2—C14—S1176.85 (16)C12—C7—C6—C5−144.8 (3)
N2—N1—C13—C10179.54 (19)C10—C11—C12—C70.9 (4)
C8—C9—C10—C111.9 (4)C8—C7—C12—C110.3 (4)
C8—C9—C10—C13−178.5 (2)C6—C7—C12—C11−178.8 (2)
N1—C13—C10—C113.1 (4)C1—C6—C5—C41.7 (4)
N1—C13—C10—C9−176.4 (2)C7—C6—C5—C4−178.1 (2)
C9—C10—C11—C12−2.0 (4)C5—C6—C1—C2−1.9 (4)
C13—C10—C11—C12178.5 (2)C7—C6—C1—C2177.9 (2)
C10—C9—C8—C7−0.7 (4)C6—C1—C2—C30.7 (4)
C12—C7—C8—C9−0.4 (4)C6—C5—C4—C3−0.3 (4)
C6—C7—C8—C9178.8 (2)C5—C4—C3—C2−1.0 (4)
C8—C7—C6—C1−143.7 (2)C1—C2—C3—C40.8 (4)
D—H···AD—HH···AD···AD—H···A
N2—H14···O10.92 (3)1.91 (3)2.819 (3)172 (3)
N3—H15···N10.91 (3)2.14 (3)2.585 (3)110 (2)
N3—H16···S1i0.86 (4)2.59 (4)3.422 (3)163 (3)
O1—H17···S1ii0.86 (5)2.44 (5)3.287 (3)169 (4)
O1—H18···S1iii0.77 (5)2.60 (5)3.352 (3)164 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H14⋯O10.92 (3)1.91 (3)2.819 (3)172 (3)
N3—H15⋯N10.91 (3)2.14 (3)2.585 (3)110 (2)
N3—H16⋯S1i0.86 (4)2.59 (4)3.422 (3)163 (3)
O1—H17⋯S1ii0.86 (5)2.44 (5)3.287 (3)169 (4)
O1—H18⋯S1iii0.77 (5)2.60 (5)3.352 (3)164 (5)

Symmetry codes: (i) ; (ii) ; (iii) .

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