| Literature DB >> 21579093 |
Rafael Mendoza-Meroño1, Laura Menéndez-Taboada, Eva Fernández-Zapico, Santiago García-Granda.
Abstract
In the title compound, C(14)H(13)N(3)S·H(2)O, the thio-semicarbazide group is nearly planar, with a maximum deviation of 0.072 (2) Å from the ideal least-squares plane, and shows an E conformation. In the crystal packing, the water mol-ecules are involved in an extensive inter-molecular N-H⋯O hydrogen-bond network, assisted by O-H⋯S inter-actions, which link the independent mol-ecules into chains extended along b axis. An intra-molecular hydrogen N-H⋯N bond helps to stabilize the mol-ecular conformation.Entities:
Year: 2010 PMID: 21579093 PMCID: PMC2979168 DOI: 10.1107/S1600536810011888
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H13N3S·H2O | |
| Monoclinic, | Melting point: 475 K |
| Hall symbol: -P 2ybc | Cu |
| Cell parameters from 3594 reflections | |
| θ = 3.9–71.2° | |
| µ = 2.05 mm−1 | |
| β = 99.750 (5)° | |
| Needle, yellow | |
| 0.28 × 0.22 × 0.19 mm |
| Oxford Diffraction Xcalibur Gemini S diffractometer | 2652 independent reflections |
| Radiation source: Enhance (Cu) X-ray Source | 2208 reflections with |
| graphite | |
| Detector resolution: 10.2673 pixels mm-1 | θmax = 71.3°, θmin = 5.9° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 8823 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 2652 reflections | Δρmax = 0.34 e Å−3 |
| 233 parameters | Δρmin = −0.32 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0022 (5) |
| Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.34.9 (release 08-12-2009 CrysAlis171 .NET)(compiled Dec 8 2009,17:31:18). Empirical absorption correction using spherical harmonics,implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 1.03245 (4) | −0.35800 (9) | 0.35948 (4) | 0.0569 (2) | |
| N2 | 0.87783 (13) | −0.1308 (3) | 0.31541 (13) | 0.0506 (5) | |
| N1 | 0.79162 (12) | −0.0958 (3) | 0.26420 (12) | 0.0512 (5) | |
| O1 | 0.95339 (19) | 0.1981 (4) | 0.42955 (18) | 0.0826 (7) | |
| C9 | 0.62409 (16) | 0.3346 (4) | 0.22359 (17) | 0.0554 (6) | |
| C14 | 0.92353 (15) | −0.3091 (4) | 0.30268 (15) | 0.0518 (5) | |
| N3 | 0.87879 (17) | −0.4428 (4) | 0.24280 (16) | 0.0687 (6) | |
| C7 | 0.48473 (14) | 0.2361 (4) | 0.12056 (15) | 0.0490 (5) | |
| C13 | 0.75391 (15) | 0.0839 (4) | 0.27165 (16) | 0.0526 (5) | |
| C10 | 0.66283 (15) | 0.1342 (3) | 0.21913 (15) | 0.0506 (5) | |
| C11 | 0.61170 (16) | −0.0131 (4) | 0.16261 (17) | 0.0546 (5) | |
| C8 | 0.53638 (16) | 0.3841 (4) | 0.17552 (16) | 0.0543 (6) | |
| C6 | 0.39026 (15) | 0.2860 (4) | 0.07042 (15) | 0.0516 (5) | |
| C12 | 0.52453 (16) | 0.0367 (4) | 0.11508 (16) | 0.0545 (6) | |
| C5 | 0.36951 (18) | 0.4859 (4) | 0.03497 (19) | 0.0639 (6) | |
| C1 | 0.31911 (17) | 0.1354 (4) | 0.05726 (18) | 0.0609 (6) | |
| C2 | 0.22957 (19) | 0.1843 (5) | 0.01258 (19) | 0.0707 (7) | |
| C4 | 0.2796 (2) | 0.5341 (5) | −0.0100 (2) | 0.0748 (8) | |
| C3 | 0.2100 (2) | 0.3841 (6) | −0.02047 (18) | 0.0728 (8) | |
| H8 | 0.5121 (18) | 0.525 (5) | 0.1814 (18) | 0.063 (7)* | |
| H12 | 0.4912 (18) | −0.064 (4) | 0.0746 (17) | 0.060 (7)* | |
| H5 | 0.421 (2) | 0.590 (5) | 0.041 (2) | 0.078 (9)* | |
| H1 | 0.3329 (17) | −0.005 (4) | 0.0831 (18) | 0.060 (7)* | |
| H9 | 0.6583 (17) | 0.436 (4) | 0.2642 (17) | 0.057 (7)* | |
| H13 | 0.7819 (17) | 0.187 (4) | 0.3128 (17) | 0.052 (6)* | |
| H11 | 0.638 (2) | −0.147 (4) | 0.1583 (19) | 0.066 (8)* | |
| H3 | 0.146 (2) | 0.420 (5) | −0.053 (2) | 0.085 (9)* | |
| H4 | 0.267 (2) | 0.679 (6) | −0.036 (2) | 0.094 (10)* | |
| H2 | 0.180 (2) | 0.076 (6) | 0.004 (2) | 0.094 (11)* | |
| H14 | 0.907 (2) | −0.033 (5) | 0.3552 (19) | 0.066 (8)* | |
| H15 | 0.825 (2) | −0.392 (5) | 0.211 (2) | 0.072 (8)* | |
| H16 | 0.907 (2) | −0.553 (6) | 0.229 (2) | 0.082 (9)* | |
| H17 | 0.975 (3) | 0.304 (8) | 0.404 (3) | 0.129 (16)* | |
| H18 | 0.959 (3) | 0.210 (7) | 0.481 (3) | 0.120 (17)* |
| S1 | 0.0468 (3) | 0.0545 (4) | 0.0666 (4) | 0.0023 (2) | 0.0016 (3) | 0.0058 (3) |
| N2 | 0.0410 (9) | 0.0526 (10) | 0.0555 (11) | 0.0008 (8) | 0.0005 (8) | −0.0025 (8) |
| N1 | 0.0417 (9) | 0.0596 (11) | 0.0509 (10) | 0.0024 (8) | 0.0035 (7) | −0.0017 (8) |
| O1 | 0.1079 (17) | 0.0666 (12) | 0.0679 (14) | −0.0285 (12) | −0.0003 (12) | −0.0015 (11) |
| C9 | 0.0459 (12) | 0.0556 (13) | 0.0621 (14) | −0.0015 (10) | 0.0020 (10) | −0.0123 (11) |
| C14 | 0.0498 (12) | 0.0509 (12) | 0.0562 (13) | −0.0018 (9) | 0.0134 (10) | 0.0014 (10) |
| N3 | 0.0610 (13) | 0.0635 (14) | 0.0759 (15) | 0.0105 (11) | −0.0048 (11) | −0.0176 (11) |
| C7 | 0.0431 (10) | 0.0533 (12) | 0.0500 (11) | −0.0014 (9) | 0.0066 (9) | −0.0015 (9) |
| C13 | 0.0444 (11) | 0.0564 (13) | 0.0560 (13) | −0.0008 (10) | 0.0052 (9) | −0.0058 (11) |
| C10 | 0.0422 (11) | 0.0541 (12) | 0.0552 (12) | −0.0006 (9) | 0.0073 (9) | −0.0027 (10) |
| C11 | 0.0490 (12) | 0.0500 (12) | 0.0630 (14) | 0.0034 (10) | 0.0046 (10) | −0.0039 (10) |
| C8 | 0.0485 (12) | 0.0516 (13) | 0.0614 (14) | 0.0038 (10) | 0.0057 (10) | −0.0061 (10) |
| C6 | 0.0457 (11) | 0.0598 (13) | 0.0490 (12) | 0.0023 (10) | 0.0067 (9) | −0.0032 (10) |
| C12 | 0.0491 (12) | 0.0536 (13) | 0.0577 (13) | −0.0037 (10) | 0.0004 (10) | −0.0081 (10) |
| C5 | 0.0558 (14) | 0.0617 (15) | 0.0714 (16) | 0.0053 (12) | 0.0030 (11) | 0.0020 (12) |
| C1 | 0.0488 (12) | 0.0681 (16) | 0.0627 (15) | −0.0034 (11) | 0.0007 (10) | 0.0016 (12) |
| C2 | 0.0510 (14) | 0.092 (2) | 0.0656 (16) | −0.0049 (14) | 0.0009 (11) | −0.0072 (14) |
| C4 | 0.0709 (17) | 0.0776 (19) | 0.0721 (18) | 0.0199 (15) | 0.0007 (13) | 0.0035 (14) |
| C3 | 0.0559 (15) | 0.102 (2) | 0.0566 (15) | 0.0155 (15) | −0.0005 (11) | −0.0039 (14) |
| S1—C14 | 1.690 (2) | C13—H13 | 0.95 (3) |
| N2—C14 | 1.341 (3) | C10—C11 | 1.396 (3) |
| N2—N1 | 1.371 (3) | C11—C12 | 1.378 (3) |
| N2—H14 | 0.92 (3) | C11—H11 | 0.94 (3) |
| N1—C13 | 1.278 (3) | C8—H8 | 0.97 (3) |
| O1—H17 | 0.86 (5) | C6—C1 | 1.393 (4) |
| O1—H18 | 0.77 (5) | C6—C5 | 1.393 (4) |
| C9—C8 | 1.387 (3) | C12—H12 | 0.96 (3) |
| C9—C10 | 1.397 (3) | C5—C4 | 1.396 (4) |
| C9—H9 | 0.97 (3) | C5—H5 | 0.98 (3) |
| C14—N3 | 1.332 (3) | C1—C2 | 1.390 (4) |
| N3—H15 | 0.90 (3) | C1—H1 | 0.98 (3) |
| N3—H16 | 0.86 (4) | C2—C3 | 1.377 (5) |
| C7—C8 | 1.390 (3) | C2—H2 | 0.98 (4) |
| C7—C12 | 1.399 (3) | C4—C3 | 1.374 (5) |
| C7—C6 | 1.480 (3) | C4—H4 | 1.01 (4) |
| C13—C10 | 1.454 (3) | C3—H3 | 0.99 (3) |
| C14—N2—N1 | 118.4 (2) | C10—C11—H11 | 118.6 (17) |
| C14—N2—H14 | 119.4 (17) | C9—C8—C7 | 121.0 (2) |
| N1—N2—H14 | 122.1 (17) | C9—C8—H8 | 118.1 (16) |
| C13—N1—N2 | 116.9 (2) | C7—C8—H8 | 120.9 (16) |
| H17—O1—H18 | 113 (4) | C1—C6—C5 | 117.7 (2) |
| C8—C9—C10 | 121.1 (2) | C1—C6—C7 | 121.3 (2) |
| C8—C9—H9 | 120.6 (15) | C5—C6—C7 | 121.0 (2) |
| C10—C9—H9 | 118.1 (15) | C11—C12—C7 | 121.5 (2) |
| N3—C14—N2 | 116.4 (2) | C11—C12—H12 | 120.0 (16) |
| N3—C14—S1 | 122.39 (19) | C7—C12—H12 | 118.4 (16) |
| N2—C14—S1 | 121.19 (18) | C6—C5—C4 | 120.8 (3) |
| C14—N3—H15 | 114.4 (19) | C6—C5—H5 | 118.1 (18) |
| C14—N3—H16 | 120 (2) | C4—C5—H5 | 121.1 (18) |
| H15—N3—H16 | 124 (3) | C2—C1—C6 | 121.2 (3) |
| C8—C7—C12 | 117.7 (2) | C2—C1—H1 | 120.6 (15) |
| C8—C7—C6 | 121.3 (2) | C6—C1—H1 | 118.1 (15) |
| C12—C7—C6 | 121.0 (2) | C3—C2—C1 | 120.1 (3) |
| N1—C13—C10 | 120.4 (2) | C3—C2—H2 | 120 (2) |
| N1—C13—H13 | 122.5 (15) | C1—C2—H2 | 120 (2) |
| C10—C13—H13 | 117.1 (15) | C3—C4—C5 | 120.4 (3) |
| C11—C10—C9 | 117.8 (2) | C3—C4—H4 | 121 (2) |
| C11—C10—C13 | 121.9 (2) | C5—C4—H4 | 119 (2) |
| C9—C10—C13 | 120.3 (2) | C4—C3—C2 | 119.7 (3) |
| C12—C11—C10 | 120.8 (2) | C4—C3—H3 | 119.5 (19) |
| C12—C11—H11 | 120.6 (17) | C2—C3—H3 | 120.8 (19) |
| C14—N2—N1—C13 | −173.4 (2) | C12—C7—C6—C1 | 35.4 (3) |
| N1—N2—C14—N3 | −2.6 (3) | C8—C7—C6—C5 | 36.1 (3) |
| N1—N2—C14—S1 | 176.85 (16) | C12—C7—C6—C5 | −144.8 (3) |
| N2—N1—C13—C10 | 179.54 (19) | C10—C11—C12—C7 | 0.9 (4) |
| C8—C9—C10—C11 | 1.9 (4) | C8—C7—C12—C11 | 0.3 (4) |
| C8—C9—C10—C13 | −178.5 (2) | C6—C7—C12—C11 | −178.8 (2) |
| N1—C13—C10—C11 | 3.1 (4) | C1—C6—C5—C4 | 1.7 (4) |
| N1—C13—C10—C9 | −176.4 (2) | C7—C6—C5—C4 | −178.1 (2) |
| C9—C10—C11—C12 | −2.0 (4) | C5—C6—C1—C2 | −1.9 (4) |
| C13—C10—C11—C12 | 178.5 (2) | C7—C6—C1—C2 | 177.9 (2) |
| C10—C9—C8—C7 | −0.7 (4) | C6—C1—C2—C3 | 0.7 (4) |
| C12—C7—C8—C9 | −0.4 (4) | C6—C5—C4—C3 | −0.3 (4) |
| C6—C7—C8—C9 | 178.8 (2) | C5—C4—C3—C2 | −1.0 (4) |
| C8—C7—C6—C1 | −143.7 (2) | C1—C2—C3—C4 | 0.8 (4) |
| H··· | ||||
| N2—H14···O1 | 0.92 (3) | 1.91 (3) | 2.819 (3) | 172 (3) |
| N3—H15···N1 | 0.91 (3) | 2.14 (3) | 2.585 (3) | 110 (2) |
| N3—H16···S1i | 0.86 (4) | 2.59 (4) | 3.422 (3) | 163 (3) |
| O1—H17···S1ii | 0.86 (5) | 2.44 (5) | 3.287 (3) | 169 (4) |
| O1—H18···S1iii | 0.77 (5) | 2.60 (5) | 3.352 (3) | 164 (5) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H14⋯O1 | 0.92 (3) | 1.91 (3) | 2.819 (3) | 172 (3) |
| N3—H15⋯N1 | 0.91 (3) | 2.14 (3) | 2.585 (3) | 110 (2) |
| N3—H16⋯S1i | 0.86 (4) | 2.59 (4) | 3.422 (3) | 163 (3) |
| O1—H17⋯S1ii | 0.86 (5) | 2.44 (5) | 3.287 (3) | 169 (4) |
| O1—H18⋯S1iii | 0.77 (5) | 2.60 (5) | 3.352 (3) | 164 (5) |
Symmetry codes: (i) ; (ii) ; (iii) .