Literature DB >> 21579059

(2-{[2-Carboxyl-ato-1-(4-chloro-phen-yl)eth-yl]imino-meth-yl}phenolato-κO,N,O')(1H-imidazole-κN)copper(II) monohydrate.

Wen-Jun Zhou1, Yin-Zhi Jiang, Yang Zou.   

Abstract

The Cu(II) atom of the title complex, [Cu(C(16)H(12)ClNO(3))(C(3)H(4)N(2))]·H(2)O, has a distorted square-planar coordination geometry formed by a tridentate Schiff base dianion and an imidazole ligand. The imidazole is nearly coplanar with the coordination plane, the dihedral angle between the planes being 3.73 (12)°. In the Schiff base ligand, the two benzene rings are oriented at a dihedral angle of 75.87 (12)°. O-H⋯O and N-H⋯O hydrogen bonding is present in the crystal structure. One H atom of the uncoordinated water mol-ecule is disordered equally over two sites.

Entities:  

Year:  2010        PMID: 21579059      PMCID: PMC2979152          DOI: 10.1107/S1600536810014765

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Transition metal complexes of salicylaldehyde-peptides and salicylaldehyde-amino­acid Schiff bases are non-enzymatic models for pyridoxal amino acid systems, which are of importance as key inter­mediates in many metabolic reactions of amino acid catalyses by enzymes, see: Bkouche-Waksman et al. (1988 ▶); Wetmore et al. (2001 ▶); Zabinski & Toney (2001 ▶). For the preparation, structural characterization, appropriate spectroscopy and magnetic studies of Schiff-base complexes derived from salicylaldehyde and amino acids, see: Ganguly et al. (2008 ▶) and references cited therein. For Schiff bases derived from β-amino acids, see: Vančo et al. (2008 ▶).

Experimental

Crystal data

[Cu(C16H12ClNO3)(C3H4N2)]·H2O M = 451.35 Monoclinic, a = 23.884 (1) Å b = 4.944 (1) Å c = 32.008 (1) Å β = 96.88 (1)° V = 3752.4 (8) Å3 Z = 8 Mo Kα radiation μ = 1.34 mm−1 T = 296 K 0.20 × 0.20 × 0.15 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2003 ▶) T min = 0.776, T max = 0.825 18085 measured reflections 4310 independent reflections 3298 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.087 S = 1.04 4310 reflections 253 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.30 e Å−3 Data collection: SMART (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810014765/xu2751sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810014765/xu2751Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C16H12ClNO3)(C3H4N2)]·H2OF(000) = 1848
Mr = 451.35Dx = 1.598 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3298 reflections
a = 23.884 (1) Åθ = 1.7–27.5°
b = 4.944 (1) ŵ = 1.34 mm1
c = 32.008 (1) ÅT = 296 K
β = 96.88 (1)°Block, dark green
V = 3752.4 (8) Å30.20 × 0.20 × 0.15 mm
Z = 8
Bruker SMART CCD diffractometer4310 independent reflections
Radiation source: fine-focus sealed tube3298 reflections with I > 2σ(I)
graphiteRint = 0.035
φ and ω scansθmax = 27.5°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2003)h = −30→30
Tmin = 0.776, Tmax = 0.825k = −6→6
18085 measured reflectionsl = −41→41
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.087H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0381P)2 + 2.3614P] where P = (Fo2 + 2Fc2)/3
4310 reflections(Δ/σ)max < 0.001
253 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cu10.257392 (11)0.70003 (6)0.103939 (8)0.03102 (10)
Cl1−0.00394 (3)1.30201 (17)0.18252 (3)0.0645 (2)
N10.20142 (7)0.4707 (4)0.12667 (6)0.0301 (4)
N20.31243 (7)0.9444 (4)0.08174 (6)0.0332 (4)
N30.34883 (9)1.2624 (4)0.04560 (7)0.0414 (5)
H3A0.35131.39150.02790.050*
O10.31821 (6)0.5542 (4)0.14014 (5)0.0406 (4)
O20.13208 (7)0.8259 (4)0.00906 (5)0.0425 (4)
O30.20152 (7)0.8490 (4)0.06065 (5)0.0436 (4)
C10.31811 (10)0.3666 (5)0.16842 (7)0.0351 (5)
C20.36998 (10)0.2833 (6)0.19110 (8)0.0439 (6)
H20.40330.36710.18580.053*
C30.37183 (11)0.0827 (6)0.22041 (7)0.0447 (6)
H30.40650.03160.23460.054*
C40.32307 (11)−0.0477 (6)0.22958 (8)0.0462 (7)
H40.3250−0.18380.24980.055*
C50.27261 (10)0.0272 (5)0.20854 (7)0.0409 (6)
H50.2400−0.05940.21460.049*
C60.26851 (10)0.2331 (5)0.17774 (7)0.0329 (5)
C70.21439 (10)0.2914 (5)0.15579 (7)0.0335 (5)
H70.18460.18790.16330.040*
C80.14124 (9)0.4717 (5)0.10794 (7)0.0308 (5)
H80.12510.29930.11570.037*
C90.10709 (9)0.6933 (5)0.12577 (7)0.0313 (5)
C100.11509 (10)0.7554 (5)0.16848 (8)0.0383 (6)
H100.14400.67010.18570.046*
C110.08136 (10)0.9405 (6)0.18610 (8)0.0433 (6)
H110.08750.97880.21470.052*
C120.03856 (10)1.0673 (5)0.16069 (8)0.0426 (6)
C130.02920 (10)1.0118 (5)0.11820 (8)0.0431 (6)
H130.00031.09870.10130.052*
C140.06307 (9)0.8260 (5)0.10105 (8)0.0387 (6)
H140.05650.78810.07240.046*
C150.13857 (9)0.4720 (5)0.05973 (7)0.0331 (5)
H15A0.16170.32500.05130.040*
H15B0.10000.43730.04770.040*
C160.15803 (9)0.7320 (5)0.04156 (7)0.0325 (5)
C170.30207 (10)1.1329 (5)0.05273 (7)0.0385 (6)
H170.26641.17070.03890.046*
C180.39202 (11)1.1523 (6)0.07154 (8)0.0487 (7)
H180.42981.20160.07350.058*
C190.36968 (9)0.9583 (6)0.09385 (8)0.0408 (6)
H190.38970.85040.11420.049*
O1W0.48323 (8)0.7498 (5)0.01584 (7)0.0703 (6)
H1W0.44690.73370.01590.084*
H2W10.49590.88830.00660.084*0.50
H2W20.49870.62090.00500.084*0.50
U11U22U33U12U13U23
Cu10.02878 (15)0.03081 (17)0.03347 (16)−0.00405 (12)0.00374 (11)0.00462 (13)
Cl10.0498 (4)0.0640 (5)0.0836 (6)0.0023 (4)0.0240 (4)−0.0184 (4)
N10.0281 (9)0.0298 (11)0.0323 (10)−0.0028 (8)0.0034 (8)0.0038 (9)
N20.0315 (10)0.0363 (12)0.0314 (10)−0.0053 (9)0.0027 (8)0.0040 (9)
N30.0459 (12)0.0394 (13)0.0399 (11)−0.0119 (10)0.0094 (9)0.0071 (10)
O10.0320 (8)0.0453 (11)0.0439 (10)−0.0041 (8)0.0017 (7)0.0127 (9)
O20.0417 (9)0.0455 (11)0.0387 (9)−0.0073 (8)−0.0022 (8)0.0123 (8)
O30.0362 (9)0.0392 (11)0.0525 (10)−0.0121 (8)−0.0064 (8)0.0160 (9)
C10.0399 (13)0.0362 (14)0.0290 (12)0.0020 (11)0.0040 (10)−0.0005 (11)
C20.0349 (13)0.0546 (18)0.0418 (14)0.0031 (12)0.0025 (11)0.0028 (13)
C30.0447 (14)0.0524 (17)0.0354 (13)0.0139 (13)−0.0020 (11)0.0034 (13)
C40.0584 (16)0.0458 (17)0.0340 (13)0.0074 (14)0.0034 (12)0.0102 (12)
C50.0450 (14)0.0396 (15)0.0381 (13)−0.0007 (12)0.0050 (11)0.0069 (12)
C60.0354 (12)0.0322 (13)0.0310 (12)0.0030 (10)0.0044 (9)0.0014 (10)
C70.0341 (12)0.0310 (13)0.0364 (12)−0.0047 (11)0.0081 (10)0.0022 (11)
C80.0276 (11)0.0297 (12)0.0349 (12)−0.0080 (10)0.0026 (9)0.0058 (10)
C90.0271 (11)0.0332 (13)0.0340 (12)−0.0093 (10)0.0043 (9)0.0028 (11)
C100.0343 (12)0.0436 (16)0.0366 (13)−0.0048 (11)0.0023 (10)0.0048 (11)
C110.0448 (14)0.0499 (17)0.0359 (13)−0.0082 (13)0.0076 (11)−0.0029 (13)
C120.0344 (12)0.0404 (15)0.0552 (16)−0.0069 (12)0.0152 (11)−0.0048 (13)
C130.0293 (12)0.0477 (16)0.0508 (15)−0.0029 (12)−0.0009 (11)0.0003 (13)
C140.0329 (12)0.0457 (16)0.0367 (13)−0.0029 (12)0.0003 (10)−0.0016 (12)
C150.0348 (12)0.0282 (13)0.0355 (12)−0.0060 (10)0.0009 (10)−0.0003 (11)
C160.0325 (11)0.0325 (13)0.0332 (12)−0.0026 (10)0.0073 (10)0.0018 (10)
C170.0354 (12)0.0422 (15)0.0381 (13)−0.0083 (11)0.0046 (10)0.0050 (12)
C180.0370 (13)0.0574 (19)0.0522 (16)−0.0136 (13)0.0069 (12)0.0030 (14)
C190.0319 (12)0.0470 (16)0.0425 (14)−0.0066 (11)0.0004 (10)0.0069 (12)
O1W0.0450 (11)0.0803 (16)0.0830 (15)−0.0032 (11)−0.0032 (11)0.0025 (12)
Cu1—O11.8894 (16)C6—C71.425 (3)
Cu1—O31.9494 (16)C7—H70.9300
Cu1—N11.9582 (18)C8—C91.518 (3)
Cu1—N21.9789 (18)C8—C151.537 (3)
Cl1—C121.742 (3)C8—H80.9800
N1—C71.297 (3)C9—C101.392 (3)
N1—C81.489 (3)C9—C141.401 (3)
N2—C171.318 (3)C10—C111.383 (3)
N2—C191.378 (3)C10—H100.9300
N3—C171.331 (3)C11—C121.379 (3)
N3—C181.358 (3)C11—H110.9300
N3—H3A0.8600C12—C131.379 (3)
O1—C11.296 (3)C13—C141.381 (3)
O2—C161.236 (3)C13—H130.9300
O3—C161.278 (3)C14—H140.9300
C1—C61.419 (3)C15—C161.507 (3)
C1—C21.420 (3)C15—H15A0.9700
C2—C31.362 (4)C15—H15B0.9700
C2—H20.9300C17—H170.9300
C3—C41.393 (4)C18—C191.344 (3)
C3—H30.9300C18—H180.9300
C4—C51.360 (3)C19—H190.9300
C4—H40.9300O1W—H1W0.8709
C5—C61.412 (3)O1W—H2W10.8180
C5—H50.9300O1W—H2W20.8325
O1—Cu1—O3172.18 (7)C9—C8—H8106.6
O1—Cu1—N193.45 (7)C15—C8—H8106.6
O3—Cu1—N192.47 (7)C10—C9—C14117.2 (2)
O1—Cu1—N287.61 (7)C10—C9—C8120.8 (2)
O3—Cu1—N286.66 (7)C14—C9—C8121.8 (2)
N1—Cu1—N2177.75 (8)C11—C10—C9121.9 (2)
C7—N1—C8115.30 (18)C11—C10—H10119.1
C7—N1—Cu1123.22 (15)C9—C10—H10119.1
C8—N1—Cu1121.16 (14)C12—C11—C10119.2 (2)
C17—N2—C19105.0 (2)C12—C11—H11120.4
C17—N2—Cu1127.44 (16)C10—C11—H11120.4
C19—N2—Cu1127.53 (16)C11—C12—C13120.8 (2)
C17—N3—C18107.1 (2)C11—C12—Cl1119.5 (2)
C17—N3—H3A126.5C13—C12—Cl1119.6 (2)
C18—N3—H3A126.5C12—C13—C14119.4 (2)
C1—O1—Cu1129.47 (15)C12—C13—H13120.3
C16—O3—Cu1128.07 (16)C14—C13—H13120.3
O1—C1—C6123.5 (2)C13—C14—C9121.5 (2)
O1—C1—C2119.3 (2)C13—C14—H14119.2
C6—C1—C2117.2 (2)C9—C14—H14119.2
C3—C2—C1121.2 (2)C16—C15—C8114.26 (19)
C3—C2—H2119.4C16—C15—H15A108.7
C1—C2—H2119.4C8—C15—H15A108.7
C2—C3—C4121.5 (2)C16—C15—H15B108.7
C2—C3—H3119.2C8—C15—H15B108.7
C4—C3—H3119.2H15A—C15—H15B107.6
C5—C4—C3118.9 (2)O2—C16—O3122.0 (2)
C5—C4—H4120.5O2—C16—C15119.9 (2)
C3—C4—H4120.5O3—C16—C15118.1 (2)
C4—C5—C6121.7 (2)N2—C17—N3111.7 (2)
C4—C5—H5119.2N2—C17—H17124.1
C6—C5—H5119.2N3—C17—H17124.1
C5—C6—C1119.5 (2)C19—C18—N3106.9 (2)
C5—C6—C7118.2 (2)C19—C18—H18126.6
C1—C6—C7122.2 (2)N3—C18—H18126.6
N1—C7—C6128.1 (2)C18—C19—N2109.3 (2)
N1—C7—H7115.9C18—C19—H19125.4
C6—C7—H7115.9N2—C19—H19125.4
N1—C8—C9112.78 (18)H1W—O1W—H2W1119.3
N1—C8—C15109.03 (17)H1W—O1W—H2W2115.1
C9—C8—C15114.66 (19)H2W1—O1W—H2W2106.8
N1—C8—H8106.6
D—H···AD—HH···AD···AD—H···A
O1W—H1W···O2i0.871.982.799 (3)156
O1W—H2W1···O1Wii0.822.012.826 (4)172
O1W—H2W2···O1Wiii0.832.022.822 (5)163
N3—H3A···O2iv0.861.902.758 (3)172
Table 1

Selected bond lengths (Å)

Cu1—O11.8894 (16)
Cu1—O31.9494 (16)
Cu1—N11.9582 (18)
Cu1—N21.9789 (18)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W⋯O2i0.871.982.799 (3)156
O1W—H2W1⋯O1Wii0.822.012.826 (4)172
O1W—H2W2⋯O1Wiii0.832.022.822 (5)163
N3—H3A⋯O2iv0.861.902.758 (3)172

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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Authors:  I Bkouche-Waksman; J M Barbe; A Kvick
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