Literature DB >> 21579045

(Dimethyl-formamide-κO)[2-meth-oxy-6-(2-pyridylmethyl-imino-meth-yl)phenolato-κN,N',O](thio-cyanato-κN)copper(II).

Qianqian Bao, Xiaodan Chen, Rong Rong, Feifei Shi.   

Abstract

In the title compound, [Cu(C(14)H(13)N(2)O(2))(NCS)(C(3)H(7)NO)], the Cu(2+) ion is coordinated by an N,N',O-tridentate 2-meth-oxy-6-(2-pyridylmethyl-imino-meth-yl)phenolate ligand, an N-bonded thio-cyanate ion and an O-bonded dimethyl-formamide (DMF) mol-ecule, resulting in a distorted CuN(3)O(2) square-based pyramidal geometry for the metal ion, with the DMF O atom in the apical site. The dihedral angle between the aromatic rings in the ligand is 8.70 (16)°. The S atom is disordered over two positions in a 0.901 (6):0.099 (6) ratio. In the crystal, mol-ecules inter-act by way of π-π stacking inter-actions [centroid-centroid separation = 3.720 (2) Å].

Entities:  

Year:  2010        PMID: 21579045      PMCID: PMC2979238          DOI: 10.1107/S1600536810014212

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Pointeau et al. (1986 ▶). For related structures, see: Li & Zhang (2004 ▶); You & Zhu (2004 ▶).

Experimental

Crystal data

[Cu(C14H13N2O2)(NCS)(C3H7NO)] M = 435.98 Triclinic, a = 8.6768 (9) Å b = 10.9310 (11) Å c = 11.0689 (12) Å α = 83.251 (2)° β = 72.023 (1)° γ = 79.530 (1)° V = 979.84 (18) Å3 Z = 2 Mo Kα radiation μ = 1.25 mm−1 T = 298 K 0.20 × 0.12 × 0.09 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.737, T max = 0.868 5129 measured reflections 3392 independent reflections 2679 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.090 S = 1.09 3392 reflections 251 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.37 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810014212/hb5406sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810014212/hb5406Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C14H13N2O2)(NCS)(C3H7NO)]Z = 2
Mr = 435.98F(000) = 450
Triclinic, P1Dx = 1.478 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.6768 (9) ÅCell parameters from 13380 reflections
b = 10.9310 (11) Åθ = 3.0–27.6°
c = 11.0689 (12) ŵ = 1.25 mm1
α = 83.251 (2)°T = 298 K
β = 72.023 (1)°Prism, dark brown
γ = 79.530 (1)°0.20 × 0.12 × 0.09 mm
V = 979.84 (18) Å3
Rigaku SCXmini diffractometer3392 independent reflections
Radiation source: fine-focus sealed tube2679 reflections with I > 2σ(I)
graphiteRint = 0.016
Detector resolution: 8.192 pixels mm-1θmax = 25.0°, θmin = 1.9°
Thin–slice ω scansh = −9→10
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −13→7
Tmin = 0.737, Tmax = 0.868l = −12→13
5129 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.039P)2 + 0.2715P] where P = (Fo2 + 2Fc2)/3
3392 reflections(Δ/σ)max = 0.001
251 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cu10.63382 (4)0.88140 (3)0.58156 (3)0.03823 (14)
S10.1914 (3)0.73555 (19)0.89276 (15)0.0641 (6)0.901 (6)
S1'0.255 (2)0.6960 (16)0.9198 (14)0.0641 (6)0.099 (6)
N10.7507 (3)0.9830 (2)0.4385 (2)0.0367 (5)
N20.6888 (3)1.0010 (2)0.6814 (2)0.0386 (6)
N30.4812 (3)0.8079 (2)0.7321 (2)0.0450 (6)
N40.9692 (3)0.5684 (2)0.7084 (3)0.0512 (7)
O10.5788 (2)0.78300 (18)0.47433 (19)0.0442 (5)
O20.4899 (3)0.61550 (19)0.3729 (2)0.0514 (6)
O30.8691 (3)0.73557 (19)0.5981 (2)0.0545 (6)
C10.7883 (3)0.9606 (3)0.3205 (3)0.0405 (7)
H10.85351.01230.26180.049*
C20.7394 (3)0.8639 (3)0.2710 (3)0.0385 (7)
C30.6353 (3)0.7818 (3)0.3508 (3)0.0385 (7)
C40.5880 (4)0.6919 (3)0.2902 (3)0.0430 (7)
C50.6418 (4)0.6871 (3)0.1600 (3)0.0514 (8)
H50.60840.62910.12230.062*
C60.7457 (4)0.7678 (3)0.0834 (3)0.0575 (9)
H60.78180.7628−0.00440.069*
C70.7939 (4)0.8537 (3)0.1377 (3)0.0507 (8)
H70.86390.90660.08630.061*
C80.4532 (5)0.5136 (3)0.3227 (4)0.0697 (11)
H8A0.37920.54450.27320.105*
H8B0.40320.45790.39140.105*
H8C0.55260.46980.26960.105*
C90.8024 (4)1.0923 (3)0.4699 (3)0.0417 (7)
H9A0.73971.16770.44330.050*
H9B0.91751.09360.42520.050*
C100.7757 (3)1.0878 (3)0.6111 (3)0.0388 (7)
C110.8352 (4)1.1694 (3)0.6660 (3)0.0479 (8)
H110.89731.22770.61550.058*
C120.8012 (4)1.1628 (3)0.7959 (3)0.0525 (8)
H120.83931.21730.83450.063*
C130.7099 (4)1.0746 (3)0.8691 (3)0.0550 (9)
H130.68501.06920.95730.066*
C140.6569 (4)0.9956 (3)0.8089 (3)0.0496 (8)
H140.59640.93560.85790.059*
C150.3643 (4)0.7751 (3)0.7999 (3)0.0399 (7)
C160.8581 (4)0.6634 (3)0.6928 (3)0.0490 (8)
H160.76230.67690.75990.059*
C170.9490 (5)0.4915 (4)0.8262 (4)0.0790 (12)
H17A1.02810.50390.86620.118*
H17B0.96490.40550.80870.118*
H17C0.84050.51420.88200.118*
C181.1236 (5)0.5440 (4)0.6098 (4)0.0901 (14)
H18A1.11350.58660.53100.135*
H18B1.15220.45590.59960.135*
H18C1.20770.57310.63330.135*
U11U22U33U12U13U23
Cu10.0348 (2)0.0348 (2)0.0399 (2)−0.00972 (15)−0.00338 (15)0.00433 (15)
S10.0534 (10)0.0732 (10)0.0568 (7)−0.0317 (8)0.0074 (7)0.0010 (6)
S1'0.0534 (10)0.0732 (10)0.0568 (7)−0.0317 (8)0.0074 (7)0.0010 (6)
N10.0332 (13)0.0317 (13)0.0418 (15)−0.0070 (10)−0.0076 (11)0.0055 (10)
N20.0333 (13)0.0359 (14)0.0412 (15)−0.0073 (10)−0.0041 (11)0.0034 (11)
N30.0414 (14)0.0411 (15)0.0473 (16)−0.0123 (12)−0.0039 (13)0.0023 (12)
N40.0492 (16)0.0414 (16)0.0636 (18)−0.0062 (13)−0.0228 (14)0.0096 (13)
O10.0451 (12)0.0429 (12)0.0410 (13)−0.0173 (9)−0.0029 (10)0.0004 (9)
O20.0515 (13)0.0434 (13)0.0574 (14)−0.0159 (10)−0.0072 (11)−0.0065 (10)
O30.0445 (13)0.0485 (14)0.0601 (15)0.0008 (10)−0.0118 (11)0.0156 (11)
C10.0311 (15)0.0377 (17)0.0450 (19)−0.0043 (13)−0.0058 (13)0.0120 (13)
C20.0321 (15)0.0351 (16)0.0425 (18)−0.0011 (12)−0.0070 (13)0.0034 (13)
C30.0310 (15)0.0325 (16)0.0461 (19)0.0040 (12)−0.0092 (13)0.0006 (13)
C40.0359 (16)0.0380 (17)0.052 (2)−0.0006 (13)−0.0120 (14)−0.0023 (14)
C50.052 (2)0.050 (2)0.054 (2)−0.0060 (16)−0.0167 (17)−0.0080 (16)
C60.065 (2)0.063 (2)0.0405 (19)−0.0064 (18)−0.0121 (17)−0.0028 (16)
C70.0478 (19)0.054 (2)0.0447 (19)−0.0083 (15)−0.0085 (15)0.0073 (15)
C80.071 (2)0.055 (2)0.084 (3)−0.0228 (19)−0.012 (2)−0.021 (2)
C90.0393 (16)0.0373 (17)0.0471 (19)−0.0141 (13)−0.0109 (14)0.0100 (13)
C100.0282 (14)0.0326 (16)0.0502 (19)−0.0010 (12)−0.0074 (13)0.0014 (13)
C110.0413 (17)0.0449 (19)0.056 (2)−0.0119 (14)−0.0129 (15)0.0064 (15)
C120.052 (2)0.050 (2)0.060 (2)−0.0109 (16)−0.0202 (17)−0.0063 (16)
C130.059 (2)0.058 (2)0.046 (2)−0.0076 (17)−0.0131 (17)−0.0038 (16)
C140.0510 (19)0.0473 (19)0.047 (2)−0.0154 (15)−0.0074 (16)0.0042 (15)
C150.0478 (18)0.0331 (16)0.0367 (17)−0.0109 (14)−0.0066 (15)−0.0022 (13)
C160.0421 (18)0.0425 (19)0.059 (2)−0.0060 (15)−0.0104 (16)−0.0016 (16)
C170.090 (3)0.068 (3)0.080 (3)−0.016 (2)−0.039 (2)0.032 (2)
C180.061 (2)0.090 (3)0.092 (3)0.024 (2)−0.012 (2)0.016 (2)
Cu1—O11.905 (2)C5—H50.9300
Cu1—N11.942 (2)C6—C71.358 (5)
Cu1—N31.971 (3)C6—H60.9300
Cu1—N22.012 (2)C7—H70.9300
Cu1—O32.392 (2)C8—H8A0.9600
S1—C151.635 (3)C8—H8B0.9600
S1'—C151.633 (13)C8—H8C0.9600
N1—C11.287 (4)C9—C101.504 (4)
N1—C91.463 (3)C9—H9A0.9700
N2—C101.342 (4)C9—H9B0.9700
N2—C141.347 (4)C10—C111.385 (4)
N3—C151.149 (4)C11—C121.372 (4)
N4—C161.317 (4)C11—H110.9300
N4—C181.447 (5)C12—C131.383 (4)
N4—C171.447 (4)C12—H120.9300
O1—C31.304 (3)C13—C141.368 (4)
O2—C41.364 (4)C13—H130.9300
O2—C81.426 (4)C14—H140.9300
O3—C161.225 (4)C16—H160.9300
C1—C21.427 (4)C17—H17A0.9600
C1—H10.9300C17—H17B0.9600
C2—C71.416 (4)C17—H17C0.9600
C2—C31.420 (4)C18—H18A0.9600
C3—C41.433 (4)C18—H18B0.9600
C4—C51.375 (4)C18—H18C0.9600
C5—C61.397 (5)
O1—Cu1—N192.88 (9)O2—C8—H8B109.5
O1—Cu1—N390.19 (9)H8A—C8—H8B109.5
N1—Cu1—N3168.56 (9)O2—C8—H8C109.5
O1—Cu1—N2173.84 (9)H8A—C8—H8C109.5
N1—Cu1—N282.13 (10)H8B—C8—H8C109.5
N3—Cu1—N294.01 (10)N1—C9—C10109.5 (2)
O1—Cu1—O393.96 (8)N1—C9—H9A109.8
N1—Cu1—O396.07 (8)C10—C9—H9A109.8
N3—Cu1—O394.71 (9)N1—C9—H9B109.8
N2—Cu1—O390.18 (8)C10—C9—H9B109.8
C1—N1—C9118.2 (2)H9A—C9—H9B108.2
C1—N1—Cu1125.6 (2)N2—C10—C11121.8 (3)
C9—N1—Cu1116.20 (18)N2—C10—C9116.1 (3)
C10—N2—C14118.4 (3)C11—C10—C9122.2 (3)
C10—N2—Cu1115.2 (2)C12—C11—C10119.0 (3)
C14—N2—Cu1126.2 (2)C12—C11—H11120.5
C15—N3—Cu1161.4 (3)C10—C11—H11120.5
C16—N4—C18120.1 (3)C11—C12—C13119.5 (3)
C16—N4—C17122.3 (3)C11—C12—H12120.2
C18—N4—C17117.5 (3)C13—C12—H12120.2
C3—O1—Cu1127.30 (19)C14—C13—C12118.5 (3)
C4—O2—C8117.7 (3)C14—C13—H13120.7
C16—O3—Cu1119.2 (2)C12—C13—H13120.7
N1—C1—C2126.2 (3)N2—C14—C13122.7 (3)
N1—C1—H1116.9N2—C14—H14118.6
C2—C1—H1116.9C13—C14—H14118.6
C7—C2—C3119.9 (3)N3—C15—S1'156.9 (9)
C7—C2—C1118.0 (3)N3—C15—S1176.5 (3)
C3—C2—C1122.1 (3)S1'—C15—S126.5 (8)
O1—C3—C2124.9 (3)O3—C16—N4126.1 (3)
O1—C3—C4117.8 (3)O3—C16—H16116.9
C2—C3—C4117.3 (3)N4—C16—H16116.9
O2—C4—C5125.5 (3)N4—C17—H17A109.5
O2—C4—C3113.9 (3)N4—C17—H17B109.5
C5—C4—C3120.6 (3)H17A—C17—H17B109.5
C4—C5—C6121.2 (3)N4—C17—H17C109.5
C4—C5—H5119.4H17A—C17—H17C109.5
C6—C5—H5119.4H17B—C17—H17C109.5
C7—C6—C5119.8 (3)N4—C18—H18A109.5
C7—C6—H6120.1N4—C18—H18B109.5
C5—C6—H6120.1H18A—C18—H18B109.5
C6—C7—C2121.2 (3)N4—C18—H18C109.5
C6—C7—H7119.4H18A—C18—H18C109.5
C2—C7—H7119.4H18B—C18—H18C109.5
O2—C8—H8A109.5
Cu1—O11.905 (2)
Cu1—N11.942 (2)
Cu1—N31.971 (3)
Cu1—N22.012 (2)
Cu1—O32.392 (2)
O1—Cu1—N192.88 (9)
O1—Cu1—N390.19 (9)
N1—Cu1—N3168.56 (9)
O1—Cu1—N2173.84 (9)
N1—Cu1—N282.13 (10)
N3—Cu1—N294.01 (10)
O1—Cu1—O393.96 (8)
N1—Cu1—O396.07 (8)
N3—Cu1—O394.71 (9)
N2—Cu1—O390.18 (8)
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