Literature DB >> 21579008

Poly[μ(2)-aqua-aqua-(μ(3)-1H-benzimidazole-5,6-dicarboxyl-ato-κN:O:O)manganese(II)].

Tan Zheng-De1, Hai Qian-Qian, Yi Bing.   

Abstract

In the title complex, [Mn(C(9)H(4)N(2)O(4))(H(2)O)(2)](n), the Mn(II) atom is in a distorted octa-hedral coordination completed by one N atom from one 1H-benzimidazole-5,6-dicarboxyl-ate ligand, two O atoms from two different 1H-benzimidazole-5,6-dicarboxyl-ate ligands, and three O atoms from three water mol-ecules. Two bridging water mol-ecules and two bridging carboxyl-ate groups from a 1H-benzimidazole-5,6-dicarboxyl-ate ligand connect two Mn(II) ions into a dimeric structure. In the crystal, extensive inter-molecular O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonding forms a three-dimensional network.

Entities:  

Year:  2010        PMID: 21579008      PMCID: PMC2979272          DOI: 10.1107/S1600536810011979

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to 1H-benzimidazole-5,6-dicarboxyl­ate complexes and related structures, see: Yao et al. (2008 ▶); Wei et al. (2009 ▶); Song et al. (2009a ▶,b ▶).

Experimental

Crystal data

[Mn(C9H4N2O4)(H2O)2] M = 295.11 Monoclinic, a = 8.8875 (18) Å b = 9.2079 (18) Å c = 12.939 (3) Å β = 97.22 (3)° V = 1050.5 (4) Å3 Z = 4 Mo Kα radiation μ = 1.28 mm−1 T = 293 K 0.29 × 0.26 × 0.25 mm

Data collection

Rigaku/MSC Mercury CCD diffractometer Absorption correction: multi-scan (REQAB; Jacobson, 1998 ▶) T min = 0.708, T max = 0.740 8122 measured reflections 1888 independent reflections 1792 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.098 S = 1.11 1888 reflections 163 parameters 18 restraints H-atom parameters constrained Δρmax = 0.71 e Å−3 Δρmin = −0.84 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810011979/zb2004sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810011979/zb2004Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C9H4N2O4)(H2O)2]F(000) = 596
Mr = 295.11Dx = 1.866 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9020 reflections
a = 8.8875 (18) Åθ = 3.2–27.5°
b = 9.2079 (18) ŵ = 1.28 mm1
c = 12.939 (3) ÅT = 293 K
β = 97.22 (3)°Block, colorless
V = 1050.5 (4) Å30.29 × 0.26 × 0.25 mm
Z = 4
Rigaku/MSC Mercury CCD diffractometer1888 independent reflections
Radiation source: fine-focus sealed tube1792 reflections with I > 2σ(I)
graphiteRint = 0.025
ω scansθmax = 25.2°, θmin = 3.2°
Absorption correction: multi-scan (REQAB; Jacobson, 1998)h = −10→10
Tmin = 0.708, Tmax = 0.740k = −11→11
8122 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0562P)2 + 1.2161P] where P = (Fo2 + 2Fc2)/3
1888 reflections(Δ/σ)max = 0.001
163 parametersΔρmax = 0.71 e Å3
18 restraintsΔρmin = −0.84 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6538 (3)0.9382 (3)0.9155 (2)0.0248 (6)
H10.55520.96780.92150.030*
N10.7164 (2)0.8221 (3)0.96244 (19)0.0229 (5)
O1W0.52018 (17)0.5378 (2)0.88035 (12)0.0232 (4)
Mn10.59756 (4)0.64549 (4)1.03462 (3)0.01916 (18)
C20.8810 (3)0.9343 (3)0.8676 (2)0.0222 (6)
N20.7455 (3)1.0094 (3)0.85830 (19)0.0253 (5)
H20.72411.08710.82260.030*
O21.3361 (2)0.7520 (2)0.77220 (15)0.0249 (4)
O2W0.6154 (2)0.74283 (19)1.18596 (14)0.0364 (5)
C30.8628 (3)0.8183 (3)0.9340 (2)0.0204 (5)
O31.3671 (2)0.7185 (2)0.99961 (16)0.0247 (4)
C40.9821 (3)0.7226 (3)0.9624 (2)0.0229 (6)
H40.97240.64631.00820.028*
O41.2334 (2)0.5175 (2)0.95142 (17)0.0281 (5)
C51.1158 (3)0.7451 (3)0.9201 (2)0.0204 (6)
C61.1295 (3)0.8575 (3)0.8473 (2)0.0208 (6)
C71.2657 (3)0.8663 (3)0.7888 (2)0.0194 (6)
C81.2495 (3)0.6528 (3)0.9593 (2)0.0211 (6)
C131.01235 (18)0.95590 (19)0.82118 (13)0.0237 (6)
H131.02121.03210.77520.028*
H4W0.57000.80401.14510.028*
H1W0.44440.56570.84000.028*
H3W0.57940.65891.17540.028*
H2W0.59000.50890.84730.028*
O11.2983 (3)0.9885 (2)0.75589 (18)0.0341 (5)
U11U22U33U12U13U23
C10.0165 (13)0.0247 (15)0.0341 (15)0.0037 (10)0.0065 (11)0.0005 (12)
N10.0160 (11)0.0230 (12)0.0309 (13)0.0014 (9)0.0079 (9)0.0030 (10)
O1W0.0217 (9)0.0265 (10)0.0230 (9)0.0043 (8)0.0091 (7)0.0005 (8)
Mn10.0167 (3)0.0175 (3)0.0242 (3)0.00077 (14)0.00610 (17)0.00014 (15)
C20.0182 (13)0.0197 (13)0.0291 (14)0.0021 (10)0.0048 (11)0.0025 (11)
N20.0205 (12)0.0214 (12)0.0348 (13)0.0057 (9)0.0067 (10)0.0086 (10)
O20.0248 (10)0.0233 (10)0.0285 (10)0.0012 (8)0.0102 (8)−0.0021 (8)
O2W0.0467 (14)0.0317 (12)0.0324 (12)−0.0080 (10)0.0109 (10)−0.0085 (9)
C30.0183 (9)0.0208 (9)0.0225 (9)0.0002 (8)0.0047 (8)0.0010 (8)
O30.0175 (10)0.0255 (11)0.0314 (10)0.0030 (8)0.0044 (8)−0.0019 (8)
C40.0192 (13)0.0208 (14)0.0300 (14)0.0011 (10)0.0082 (11)0.0071 (11)
O40.0191 (9)0.0195 (10)0.0470 (12)0.0029 (7)0.0089 (9)0.0052 (9)
C50.0171 (13)0.0184 (13)0.0263 (14)0.0001 (10)0.0055 (10)0.0010 (10)
C60.0182 (13)0.0198 (14)0.0256 (14)−0.0015 (9)0.0077 (11)−0.0005 (10)
C70.0183 (13)0.0180 (13)0.0228 (13)−0.0028 (9)0.0068 (11)−0.0012 (10)
C80.0187 (14)0.0230 (15)0.0239 (14)0.0026 (10)0.0112 (11)0.0038 (10)
C130.0232 (14)0.0189 (13)0.0302 (14)0.0006 (10)0.0087 (11)0.0066 (11)
O10.0359 (9)0.0296 (9)0.0411 (9)−0.0028 (7)0.0212 (7)0.0013 (7)
C1—N11.317 (4)N2—H20.8600
C1—N21.339 (4)O2—C71.257 (3)
C1—H10.9300O2W—H4W0.8407
N1—C31.396 (3)O2W—H3W0.8411
N1—Mn12.209 (2)C3—C41.392 (4)
O1W—Mn12.2572 (18)O3—C81.262 (4)
O1W—Mn1i2.3334 (19)O3—Mn1iv2.1495 (19)
O1W—H1W0.8386C4—C51.384 (4)
O1W—H2W0.8401C4—H40.9300
Mn1—O4ii2.115 (2)O4—C81.256 (3)
Mn1—O2W2.141 (2)O4—Mn1ii2.115 (2)
Mn1—O3iii2.1496 (19)C5—C61.414 (4)
Mn1—O1Wi2.3334 (19)C5—C81.497 (4)
Mn1—H4W2.0785C6—C131.390 (3)
Mn1—H3W1.8533C6—C71.508 (4)
C2—N21.381 (3)C7—O11.250 (3)
C2—C31.392 (4)C13—H130.9300
C2—C131.393 (3)
N1—C1—N2113.6 (2)N1—Mn1—H3W118.2
N1—C1—H1123.2O1W—Mn1—H3W147.6
N2—C1—H1123.2O1Wi—Mn1—H3W59.0
C1—N1—C3104.6 (2)H4W—Mn1—H3W41.0
C1—N1—Mn1126.53 (18)N2—C2—C3105.7 (2)
C3—N1—Mn1127.15 (18)N2—C2—C13131.3 (2)
Mn1—O1W—Mn1i90.32 (6)C3—C2—C13123.0 (2)
Mn1—O1W—H1W123.2C1—N2—C2107.0 (2)
Mn1i—O1W—H1W98.2C1—N2—H2126.5
Mn1—O1W—H2W115.3C2—N2—H2126.5
Mn1i—O1W—H2W114.5Mn1—O2W—H4W74.3
H1W—O1W—H2W111.5Mn1—O2W—H3W58.9
O4ii—Mn1—O2W104.41 (8)H4W—O2W—H3W111.8
O4ii—Mn1—O3iii152.59 (8)C2—C3—C4120.3 (2)
O2W—Mn1—O3iii91.19 (8)C2—C3—N1109.1 (2)
O4ii—Mn1—N1100.75 (8)C4—C3—N1130.6 (3)
O2W—Mn1—N195.40 (9)C8—O3—Mn1iv130.88 (18)
O3iii—Mn1—N1100.03 (8)C5—C4—C3117.6 (3)
O4ii—Mn1—O1W84.15 (8)C5—C4—H4121.2
O2W—Mn1—O1W166.37 (7)C3—C4—H4121.2
O3iii—Mn1—O1W76.97 (7)C8—O4—Mn1ii128.63 (18)
N1—Mn1—O1W93.33 (8)C4—C5—C6121.5 (2)
O4ii—Mn1—O1Wi78.58 (7)C4—C5—C8117.7 (2)
O2W—Mn1—O1Wi81.81 (7)C6—C5—C8120.6 (2)
O3iii—Mn1—O1Wi81.59 (7)C13—C6—C5121.0 (2)
N1—Mn1—O1Wi176.83 (8)C13—C6—C7117.8 (2)
O1W—Mn1—O1Wi89.68 (6)C5—C6—C7121.0 (2)
O4ii—Mn1—H4W125.7O1—C7—O2123.6 (3)
O2W—Mn1—H4W22.9O1—C7—C6117.1 (2)
O3iii—Mn1—H4W74.5O2—C7—C6119.3 (2)
N1—Mn1—H4W83.0O4—C8—O3126.1 (3)
O1W—Mn1—H4W150.1O4—C8—C5117.2 (2)
O1Wi—Mn1—H4W94.9O3—C8—C5116.7 (2)
O4ii—Mn1—H3W96.4C6—C13—C2116.4 (2)
O2W—Mn1—H3W22.9C6—C13—H13121.8
O3iii—Mn1—H3W89.3C2—C13—H13121.8
D—H···AD—HH···AD···AD—H···A
N2—H2···O2v0.861.982.839 (3)174
O2W—H4W···O3iii0.842.563.065 (3)120
O1W—H1W···O2iii0.842.102.819 (3)143
O2W—H3W···O1Wi0.842.102.934 (3)169
O1W—H2W···O1vi0.841.772.575 (3)160
C4—H4···O4ii0.932.483.216 (3)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O2i0.861.982.839 (3)174
O2W—H4W⋯O3ii0.842.563.065 (3)120
O1W—H1W⋯O2ii0.842.102.819 (3)143
O2W—H3W⋯O1Wiii0.842.102.934 (3)169
O1W—H2W⋯O1iv0.841.772.575 (3)160
C4—H4⋯O4v0.932.483.216 (3)136

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Penta-aqua-(1H-benzimidazole-5,6-di-carboxyl-ato-κN)cobalt(II) penta-hydrate.

Authors:  Wen-Dong Song; Hao Wang; Shi-Jie Li; Pei-Wen Qin; Shi-Wei Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29

3.  catena-Poly[[diaqua-(1,10-phenanthroline-κN,N')nickel(II)]-μ-1H-benzimidazole-5,6-dicarboxyl-ato-κN:O].

Authors:  Wen-Dong Song; Hao Wang; Shi-Wei Hu; Pei-Wen Qin; Shi-Jie Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29
  3 in total

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