Literature DB >> 21578993

(Benzoato-κO)bis-(1,10-phenanthroline-κN,N')copper(II) chloride benzoic acid disolvate.

Wen-Xiang Huang1, Bin-Bin Liu, Jian-Li Lin.   

Abstract

In the title complex, [Cu(C(7)H(5)O(2))(C(12)H(8)N(2))(2)]Cl·2C(6)H(5)CO-OH, the Cu(II) ion is coordinated by one carboxyl-ate O atom from a benzoate anion and four N atoms from two phenantroline ligands in a distorted five-coordinate trigonal-bipyramidal CuON(4) chromophore. The Cu(2+) and the Cl(-) ion are imposed by a twofold rotation axiss which also bisects the equally disordered benzoate anion. In the crystal, the mol-ecules are assembled into chains along [010] by C-H⋯Cl, O-H⋯Cl and C-H⋯O hydrogen-bonding inter-actions. The resulting chains are further connected into two-dimensional supra-molecular layers parallel to [100] by inter-chain π⋯π stacking inter-actions [centroid-centroid distance = 3.823 (5) Å] between the phenanthroline ligands and the benzoic acid mol-ecules, and by C-H⋯O hydrogen-bonding inter-actions. Strong π⋯π stacking inter-actions between adjacent phenantroline ligands [3.548 (4) Å] assemble the layers into a three-dimensional supra-molecular architecture.

Entities:  

Year:  2010        PMID: 21578993      PMCID: PMC2979027          DOI: 10.1107/S1600536810011487

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For copper–aromatic acid coordination polymers, see: Li et al. (2006 ▶); Devereux et al. (2007 ▶). For related structures, see: Mao et al. (2001 ▶). For the τ parameter, see: Addison et al. (1984 ▶).

Experimental

Crystal data

[Cu(C7H5O2)(C12H8N2)2]Cl·2C7H6O2 M = 824.74 Monoclinic, a = 16.724 (3) Å b = 19.288 (4) Å c = 13.295 (3) Å β = 113.86 (3)° V = 3922.1 (14) Å3 Z = 4 Mo Kα radiation μ = 0.68 mm−1 T = 293 K 0.35 × 0.31 × 0.28 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.710, T max = 0.750 15193 measured reflections 3449 independent reflections 2623 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.101 S = 1.08 3449 reflections 286 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.45 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810011487/zq2032sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810011487/zq2032Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C7H5O2)(C12H8N2)2]Cl·2C7H6O2F(000) = 1700
Mr = 824.74Dx = 1.397 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 15193 reflections
a = 16.724 (3) Åθ = 3.2–25.0°
b = 19.288 (4) ŵ = 0.68 mm1
c = 13.295 (3) ÅT = 293 K
β = 113.86 (3)°Block, blue
V = 3922.1 (14) Å30.35 × 0.31 × 0.28 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer3449 independent reflections
Radiation source: fine-focus sealed tube2623 reflections with I > 2σ(I)
graphiteRint = 0.029
Detector resolution: 0 pixels mm-1θmax = 25.0°, θmin = 3.2°
ω scansh = −19→17
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −22→22
Tmin = 0.710, Tmax = 0.750l = −15→15
15193 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0393P)2 + 3.5087P] where P = (Fo2 + 2Fc2)/3
3449 reflections(Δ/σ)max = 0.001
286 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.45 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cu0.50000.26282 (3)0.25000.05651 (17)
N10.40747 (13)0.19982 (11)0.12871 (18)0.0554 (5)
N20.40438 (13)0.26263 (12)0.30525 (18)0.0565 (5)
O10.4521 (4)0.3849 (3)0.1410 (5)0.090 (2)0.50
O20.5351 (3)0.3568 (3)0.3129 (5)0.0600 (12)0.50
C10.50000.4012 (3)0.25000.0678 (11)
C20.5084 (4)0.47718 (18)0.2698 (3)0.0556 (17)0.50
C30.4829 (4)0.5284 (3)0.1894 (2)0.0788 (19)0.50
H3A0.45980.51590.11310.095*0.50
C40.4907 (5)0.5979 (2)0.2196 (3)0.075 (3)0.50
H4A0.47310.63330.16410.090*0.50
C50.5240 (5)0.61615 (16)0.3302 (4)0.084 (3)0.50
H5A0.52950.66410.35110.100*0.50
C60.5495 (3)0.5649 (2)0.4106 (3)0.0794 (18)0.50
H6A0.57260.57750.48690.095*0.50
C70.5417 (3)0.49540 (19)0.3803 (3)0.0639 (15)0.50
H7A0.55930.46000.43580.077*0.50
C80.4095 (2)0.16743 (16)0.0414 (2)0.0694 (8)
H8A0.46140.16780.03130.083*
C90.3373 (2)0.13300 (16)−0.0355 (3)0.0791 (9)
H9A0.34170.1106−0.09500.095*
C100.2608 (2)0.13242 (17)−0.0231 (3)0.0794 (9)
H10A0.21230.1097−0.07420.095*
C110.25483 (17)0.16598 (14)0.0667 (2)0.0620 (7)
C120.17667 (18)0.16982 (17)0.0868 (3)0.0790 (9)
H12A0.12600.14850.03790.095*
C130.17515 (18)0.20324 (17)0.1738 (3)0.0773 (9)
H13A0.12310.20550.18350.093*
C140.25144 (16)0.23560 (14)0.2524 (2)0.0596 (7)
C150.25428 (19)0.27038 (17)0.3459 (3)0.0726 (8)
H15A0.20410.27410.35960.087*
C160.3303 (2)0.29866 (18)0.4164 (3)0.0773 (9)
H16A0.33300.32110.47960.093*
C170.40467 (19)0.29405 (17)0.3938 (3)0.0728 (8)
H17A0.45650.31380.44300.087*
C180.32904 (15)0.23281 (13)0.2352 (2)0.0502 (6)
C190.33051 (15)0.19836 (13)0.1411 (2)0.0509 (6)
C200.6442 (2)0.89663 (16)0.5209 (3)0.0723 (8)
C210.6652 (2)0.94046 (15)0.6202 (3)0.0673 (8)
C220.7514 (2)0.9571 (2)0.6830 (3)0.0868 (10)
H22A0.79490.94050.66260.104*
C230.7738 (3)0.9976 (2)0.7744 (3)0.1056 (12)
H23A0.83221.00830.81570.127*
C240.7114 (3)1.0223 (2)0.8054 (4)0.1033 (12)
H24A0.72681.04980.86800.124*
C250.6259 (3)1.0067 (2)0.7445 (4)0.1094 (14)
H25A0.58331.02360.76620.131*
C260.6014 (2)0.96621 (18)0.6513 (3)0.0901 (11)
H26A0.54270.95640.61000.108*
Cl0.50000.80270 (7)0.25000.0916 (4)
O40.69924 (15)0.87024 (14)0.4972 (2)0.1004 (8)
O30.55968 (17)0.88975 (14)0.4593 (2)0.0977 (8)
H310.544 (3)0.867 (2)0.400 (3)0.117*
U11U22U33U12U13U23
Cu0.0442 (3)0.0686 (3)0.0647 (3)0.0000.0303 (2)0.000
N10.0514 (12)0.0577 (13)0.0631 (13)0.0028 (10)0.0293 (11)−0.0023 (11)
N20.0457 (11)0.0689 (14)0.0605 (13)−0.0025 (10)0.0274 (11)−0.0060 (11)
O10.074 (3)0.099 (5)0.066 (4)0.006 (3)−0.003 (3)−0.021 (3)
O20.048 (3)0.066 (3)0.065 (3)−0.003 (2)0.021 (3)−0.001 (2)
C10.043 (2)0.069 (3)0.090 (4)0.0000.025 (2)0.000
C20.036 (3)0.071 (3)0.057 (5)0.001 (4)0.015 (4)0.008 (3)
C30.051 (4)0.108 (6)0.068 (4)0.009 (4)0.014 (3)0.018 (4)
C40.066 (5)0.059 (4)0.099 (10)0.010 (5)0.031 (7)0.030 (4)
C50.066 (5)0.062 (4)0.118 (8)0.009 (4)0.033 (6)−0.016 (5)
C60.086 (4)0.067 (4)0.077 (4)0.000 (3)0.025 (4)−0.008 (4)
C70.065 (4)0.060 (4)0.062 (4)0.000 (3)0.020 (3)−0.004 (3)
C80.0703 (18)0.071 (2)0.077 (2)0.0054 (16)0.0401 (17)−0.0067 (16)
C90.088 (2)0.071 (2)0.075 (2)−0.0002 (18)0.0290 (18)−0.0246 (17)
C100.0640 (19)0.075 (2)0.085 (2)−0.0066 (16)0.0146 (17)−0.0168 (18)
C110.0550 (16)0.0535 (16)0.0726 (19)−0.0011 (13)0.0207 (14)−0.0038 (14)
C120.0483 (16)0.078 (2)0.105 (3)−0.0131 (15)0.0248 (17)−0.009 (2)
C130.0491 (16)0.081 (2)0.108 (3)−0.0054 (15)0.0388 (18)0.000 (2)
C140.0462 (14)0.0615 (17)0.0778 (18)0.0016 (13)0.0322 (14)0.0083 (15)
C150.0616 (18)0.086 (2)0.090 (2)0.0066 (16)0.0514 (18)0.0042 (18)
C160.071 (2)0.097 (2)0.080 (2)0.0014 (18)0.0474 (18)−0.0120 (18)
C170.0627 (17)0.093 (2)0.0726 (19)−0.0080 (16)0.0373 (16)−0.0174 (17)
C180.0423 (13)0.0502 (14)0.0619 (15)0.0033 (11)0.0248 (12)0.0061 (13)
C190.0450 (13)0.0464 (15)0.0629 (16)0.0042 (11)0.0237 (13)0.0044 (12)
C200.080 (2)0.0680 (19)0.093 (2)0.0097 (16)0.061 (2)0.0170 (17)
C210.083 (2)0.0550 (17)0.088 (2)0.0119 (15)0.0592 (19)0.0123 (15)
C220.073 (2)0.106 (3)0.093 (3)0.0252 (19)0.044 (2)0.014 (2)
C230.089 (3)0.132 (4)0.093 (3)0.011 (2)0.034 (2)−0.005 (3)
C240.115 (3)0.106 (3)0.105 (3)−0.002 (3)0.061 (3)−0.014 (2)
C250.115 (3)0.105 (3)0.146 (4)−0.003 (3)0.093 (3)−0.031 (3)
C260.084 (2)0.085 (2)0.129 (3)−0.0038 (18)0.072 (2)−0.016 (2)
Cl0.0794 (8)0.0839 (8)0.1148 (10)0.0000.0425 (7)0.000
O40.0964 (16)0.121 (2)0.1100 (18)0.0257 (15)0.0688 (15)−0.0062 (15)
O30.0869 (17)0.113 (2)0.118 (2)−0.0093 (14)0.0673 (17)−0.0255 (16)
Cu—O21.984 (5)C11—C191.399 (4)
Cu—O2i1.984 (5)C11—C121.438 (4)
Cu—N2i2.012 (2)C12—C131.334 (4)
Cu—N22.012 (2)C12—H12A0.9300
Cu—N12.110 (2)C13—C141.425 (4)
Cu—N1i2.110 (2)C13—H13A0.9300
N1—C81.330 (3)C14—C151.396 (4)
N1—C191.362 (3)C14—C181.407 (3)
N2—C171.322 (3)C15—C161.352 (4)
N2—C181.355 (3)C15—H15A0.9300
O1—C11.378 (6)C16—C171.395 (4)
O2—C11.174 (6)C16—H16A0.9300
C1—C21.486 (6)C17—H17A0.9300
C2—C31.3900C18—C191.425 (3)
C2—C71.3900C20—O41.200 (3)
C3—C41.3900C20—O31.323 (4)
C3—H3A0.9600C20—C211.485 (4)
C4—C51.3900C21—C221.380 (5)
C4—H4A0.9600C21—C261.384 (4)
C5—C61.3900C22—C231.363 (5)
C5—H5A0.9601C22—H22A0.9300
C6—C71.3900C23—C241.355 (5)
C6—H6A0.9599C23—H23A0.9300
C7—H7A0.9601C24—C251.361 (5)
C8—C91.395 (4)C24—H24A0.9300
C8—H8A0.9300C25—C261.379 (5)
C9—C101.356 (4)C25—H25A0.9300
C9—H9A0.9300C26—H26A0.9300
C10—C111.395 (4)Cl—Cli0.000 (3)
C10—H10A0.9300O3—H310.85 (4)
O2—Cu—O2i47.8 (3)C11—C10—H10A120.1
O2—Cu—N2i90.69 (16)C10—C11—C19117.1 (3)
O2i—Cu—N2i89.49 (16)C10—C11—C12124.5 (3)
O2—Cu—N289.49 (16)C19—C11—C12118.4 (3)
O2i—Cu—N290.69 (16)C13—C12—C11121.6 (3)
N2i—Cu—N2179.80 (13)C13—C12—H12A119.2
O2—Cu—N1148.10 (18)C11—C12—H12A119.2
O2i—Cu—N1101.76 (18)C12—C13—C14121.5 (3)
N2i—Cu—N199.53 (8)C12—C13—H13A119.3
N2—Cu—N180.35 (8)C14—C13—H13A119.3
O2—Cu—N1i101.76 (18)C15—C14—C18117.5 (3)
O2i—Cu—N1i148.10 (18)C15—C14—C13124.1 (3)
N2i—Cu—N1i80.35 (8)C18—C14—C13118.4 (3)
N2—Cu—N1i99.53 (8)C16—C15—C14119.7 (2)
N1—Cu—N1i109.69 (12)C16—C15—H15A120.2
C8—N1—C19117.0 (2)C14—C15—H15A120.2
C8—N1—Cu131.86 (18)C15—C16—C17119.7 (3)
C19—N1—Cu110.87 (16)C15—C16—H16A120.2
C17—N2—C18118.3 (2)C17—C16—H16A120.2
C17—N2—Cu127.38 (19)N2—C17—C16122.6 (3)
C18—N2—Cu113.88 (16)N2—C17—H17A118.7
C1—O2—Cu112.8 (4)C16—C17—H17A118.7
O2—C1—O1119.6 (6)N2—C18—C14122.3 (2)
O2—C1—C2127.5 (4)N2—C18—C19117.4 (2)
O1—C1—C2112.6 (4)C14—C18—C19120.3 (2)
C3—C2—C7120.0N1—C19—C11123.5 (2)
C3—C2—C1126.0 (3)N1—C19—C18116.7 (2)
C7—C2—C1113.9 (3)C11—C19—C18119.8 (2)
C4—C3—C2120.0O4—C20—O3122.4 (3)
C4—C3—H3A120.0O4—C20—C21122.9 (3)
C2—C3—H3A120.0O3—C20—C21114.6 (3)
C3—C4—C5120.0C22—C21—C26118.6 (3)
C3—C4—H4A120.0C22—C21—C20119.0 (3)
C5—C4—H4A120.0C26—C21—C20122.5 (3)
C4—C5—C6120.0C23—C22—C21121.1 (3)
C4—C5—H5A120.0C23—C22—H22A119.5
C6—C5—H5A120.0C21—C22—H22A119.5
C7—C6—C5120.0C24—C23—C22120.3 (4)
C7—C6—H6A120.0C24—C23—H23A119.8
C5—C6—H6A120.0C22—C23—H23A119.8
C6—C7—C2120.0C23—C24—C25119.6 (4)
C6—C7—H7A120.0C23—C24—H24A120.2
C2—C7—H7A120.0C25—C24—H24A120.2
N1—C8—C9122.9 (3)C24—C25—C26121.3 (3)
N1—C8—H8A118.5C24—C25—H25A119.4
C9—C8—H8A118.5C26—C25—H25A119.4
C10—C9—C8119.6 (3)C25—C26—C21119.2 (4)
C10—C9—H9A120.2C25—C26—H26A120.4
C8—C9—H9A120.2C21—C26—H26A120.4
C9—C10—C11119.9 (3)C20—O3—H31119 (3)
C9—C10—H10A120.1
D—H···AD—HH···AD···AD—H···A
C5—H5A···Cl0.962.943.728 (4)140
O3—H31···Cl0.85 (4)2.20 (4)3.051 (3)177 (4)
O3—H31···Cli0.85 (4)2.20 (4)3.051 (3)177 (4)
C24—H24A···O4ii0.932.493.355 (5)155
C8—H8A···O3iii0.932.473.307 (4)149
C10—H10A···O1iv0.932.533.275 (7)138
C12—H12A···O1iv0.932.303.106 (7)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5A⋯Cl0.962.943.728 (4)140
O3—H31⋯Cl0.85 (4)2.20 (4)3.051 (3)177 (4)
O3—H31⋯Cli0.85 (4)2.20 (4)3.051 (3)177 (4)
C24—H24A⋯O4ii0.932.493.355 (5)155
C8—H8A⋯O3iii0.932.473.307 (4)149
C10—H10A⋯O1iv0.932.533.275 (7)138
C12—H12A⋯O1iv0.932.303.106 (7)146

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  Synthesis, X-ray crystal structures and biomimetic and anticancer activities of novel copper(II)benzoate complexes incorporating 2-(4'-thiazolyl)benzimidazole (thiabendazole), 2-(2-pyridyl)benzimidazole and 1,10-phenanthroline as chelating nitrogen donor ligands.

Authors:  Michael Devereux; Denis O Shea; Andrew Kellett; Malachy McCann; Maureen Walsh; Denise Egan; Carol Deegan; Kinga Kedziora; Georgina Rosair; Helge Müller-Bunz
Journal:  J Inorg Biochem       Date:  2007-02-14       Impact factor: 4.155

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total
  1 in total

1.  Crystal structure of aqua-bis-(hepta-fluoro-butano-ato-κO)(1,10'-phenanthroline-κ(2) N,N')copper(II).

Authors:  Ibrahim Kani
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-01-01
  1 in total

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