Literature DB >> 21578992

Tetra-kis(di-4-pyridylsulfane)dinitratocopper(II).

Rong-Hua Gao1, Li-Li Yang.   

Abstract

In the title complex, [Cu(NO(3))(2)(C(10)H(8)N(2)S)(4)], the Cu(II) atom (site symmetry ) is coordinated by two monodentate nitrate ions and two monodentate di-4-pyridylsulfane ligands, resulting in a slightly distorted trans-arranged CuO(2)N(4) octa-hedral geometry. Intra-molecular C-H⋯O hydrogen bonds are present. In the crystal, adjacent mol-ecules are linked via C-H⋯N hydrogen bonds into chains parallel to the a axis. Inter-molecular C-H⋯O inter-actions also occur.

Entities:  

Year:  2010        PMID: 21578992      PMCID: PMC2979183          DOI: 10.1107/S1600536810011414

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For transition-metal complexes of di-4-pyridylsulfane, see: Wen et al. (2004 ▶); Muthu et al. (2005 ▶); Xu et al. (2007 ▶); Zhang et al. (2008 ▶).

Experimental

Crystal data

[Cu(NO3)2(C10H8N2S)4] M = 940.59 Triclinic, a = 9.299 (4) Å b = 10.765 (5) Å c = 10.978 (5) Å α = 84.408 (6)° β = 73.759 (6)° γ = 79.180 (6)° V = 1035.1 (8) Å3 Z = 1 Mo Kα radiation μ = 0.79 mm−1 T = 296 K 0.21 × 0.19 × 0.17 mm

Data collection

Bruker SMART APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.847, T max = 0.874 7479 measured reflections 3728 independent reflections 2392 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.100 S = 0.90 3679 reflections 277 parameters 6 restraints H-atom parameters constrained Δρmax = 0.43 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810011414/rz2428sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810011414/rz2428Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(NO3)2(C10H8N2S)4]Z = 1
Mr = 940.59F(000) = 483
Triclinic, P1Dx = 1.509 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.299 (4) ÅCell parameters from 4796 reflections
b = 10.765 (5) Åθ = 2.3–28.2°
c = 10.978 (5) ŵ = 0.79 mm1
α = 84.408 (6)°T = 296 K
β = 73.759 (6)°Block, blue
γ = 79.180 (6)°0.21 × 0.19 × 0.17 mm
V = 1035.1 (8) Å3
Bruker SMART APEXII diffractometer3728 independent reflections
Radiation source: fine-focus sealed tube2392 reflections with I > 2σ(I)
graphiteRint = 0.061
ω scansθmax = 25.2°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −11→11
Tmin = 0.847, Tmax = 0.874k = −12→12
7479 measured reflectionsl = −13→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H-atom parameters constrained
S = 0.90w = 1/[σ2(Fo2) + (0.0391P)2] where P = (Fo2 + 2Fc2)/3
3679 reflections(Δ/σ)max < 0.001
277 parametersΔρmax = 0.43 e Å3
6 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.50001.00000.50000.03494 (19)
S10.46635 (10)0.45645 (8)0.29541 (10)0.0526 (3)
S20.38860 (11)1.20522 (11)−0.05513 (9)0.0609 (3)
O10.7889 (3)0.9473 (2)0.4138 (2)0.0586 (7)
O20.9388 (3)1.0613 (3)0.2949 (3)0.0869 (10)
O31.0298 (3)0.8845 (3)0.3704 (3)0.1064 (12)
N10.4896 (3)0.8203 (2)0.4611 (2)0.0337 (6)
N2−0.0360 (3)0.4563 (3)0.3369 (3)0.0556 (9)
N30.4666 (3)1.0575 (2)0.3276 (2)0.0327 (6)
N4−0.1253 (4)1.2525 (3)0.0096 (3)0.0642 (9)
N50.9202 (4)0.9628 (3)0.3612 (3)0.0538 (7)
C10.6125 (4)0.7481 (3)0.3889 (3)0.0381 (8)
H10.70610.77480.37110.046*
C20.6058 (4)0.6377 (3)0.3409 (3)0.0381 (8)
H20.69370.59080.29170.046*
C30.4684 (4)0.5955 (3)0.3654 (3)0.0359 (8)
C40.3437 (4)0.6656 (3)0.4452 (3)0.0433 (9)
H40.25000.63850.46820.052*
C50.3596 (4)0.7753 (3)0.4899 (3)0.0413 (9)
H50.27460.82100.54360.050*
C60.2705 (3)0.4599 (3)0.3124 (3)0.0385 (8)
C70.1802 (4)0.5620 (3)0.2676 (4)0.0510 (10)
H70.22050.63260.22700.061*
C80.0298 (4)0.5550 (4)0.2851 (4)0.0560 (10)
H8−0.03090.62530.25860.067*
C90.0547 (4)0.3585 (3)0.3756 (4)0.0556 (10)
H90.01330.28660.41050.067*
C100.2053 (4)0.3570 (3)0.3674 (3)0.0453 (9)
H100.26210.28710.39870.054*
C110.3401 (4)1.0425 (3)0.2976 (3)0.0365 (8)
H110.27051.00050.35690.044*
C120.3082 (4)1.0855 (3)0.1852 (3)0.0386 (8)
H120.21911.07260.16930.046*
C130.4103 (4)1.1485 (3)0.0953 (3)0.0389 (8)
C140.5424 (4)1.1637 (3)0.1250 (3)0.0404 (9)
H140.61401.20510.06710.049*
C150.5658 (4)1.1175 (3)0.2396 (3)0.0369 (8)
H150.65471.12810.25750.044*
C160.1889 (4)1.2224 (3)−0.0291 (3)0.0415 (9)
C170.1259 (4)1.1460 (3)−0.0847 (3)0.0504 (10)
H170.18731.0824−0.13640.061*
C18−0.0290 (5)1.1645 (4)−0.0632 (4)0.0592 (11)
H18−0.06941.1118−0.10220.071*
C190.0927 (4)1.3150 (4)0.0459 (4)0.0603 (11)
H190.13071.37010.08430.072*
C20−0.0611 (5)1.3244 (4)0.0630 (4)0.0725 (13)
H20−0.12501.38590.11610.087*
U11U22U33U12U13U23
Cu10.0427 (4)0.0243 (3)0.0432 (4)−0.0055 (2)−0.0207 (3)0.0000 (3)
S10.0416 (6)0.0364 (5)0.0856 (8)−0.0001 (4)−0.0239 (5)−0.0226 (5)
S20.0406 (6)0.0945 (8)0.0442 (6)−0.0093 (5)−0.0137 (5)0.0163 (6)
O10.0421 (14)0.0601 (14)0.0723 (17)−0.0193 (12)−0.0018 (13)−0.0171 (13)
O20.073 (2)0.064 (2)0.107 (3)−0.0221 (16)0.0062 (18)0.0106 (18)
O30.069 (2)0.089 (2)0.148 (3)0.0266 (18)−0.036 (2)0.000 (2)
N10.0358 (16)0.0265 (14)0.0415 (17)−0.0050 (12)−0.0151 (14)−0.0005 (12)
N20.0396 (18)0.052 (2)0.076 (2)−0.0107 (16)−0.0115 (17)−0.0103 (18)
N30.0353 (16)0.0287 (14)0.0370 (17)−0.0077 (12)−0.0128 (14)−0.0015 (12)
N40.045 (2)0.073 (2)0.072 (3)−0.0104 (19)−0.0154 (19)0.006 (2)
N50.0412 (16)0.0535 (16)0.0649 (18)−0.0102 (15)−0.0065 (15)−0.0127 (14)
C10.0317 (19)0.0398 (19)0.046 (2)−0.0101 (16)−0.0133 (17)−0.0003 (17)
C20.035 (2)0.0339 (19)0.047 (2)−0.0037 (15)−0.0122 (17)−0.0078 (16)
C30.040 (2)0.0269 (17)0.044 (2)−0.0049 (15)−0.0170 (17)−0.0005 (15)
C40.0293 (19)0.0364 (19)0.065 (3)−0.0094 (15)−0.0092 (18)−0.0096 (18)
C50.037 (2)0.0347 (19)0.051 (2)−0.0030 (16)−0.0087 (18)−0.0083 (17)
C60.038 (2)0.0345 (18)0.048 (2)−0.0056 (15)−0.0179 (17)−0.0093 (16)
C70.049 (2)0.040 (2)0.069 (3)−0.0125 (17)−0.023 (2)0.0068 (19)
C80.050 (2)0.046 (2)0.077 (3)−0.0013 (19)−0.030 (2)−0.001 (2)
C90.054 (3)0.044 (2)0.065 (3)−0.0131 (19)−0.006 (2)−0.004 (2)
C100.047 (2)0.0341 (19)0.054 (2)−0.0027 (17)−0.0130 (19)−0.0068 (17)
C110.0350 (19)0.0340 (18)0.042 (2)−0.0104 (15)−0.0114 (17)0.0008 (16)
C120.0321 (19)0.0406 (19)0.045 (2)−0.0078 (15)−0.0133 (17)0.0028 (17)
C130.0323 (19)0.044 (2)0.037 (2)−0.0021 (16)−0.0084 (17)−0.0008 (16)
C140.034 (2)0.043 (2)0.042 (2)−0.0099 (16)−0.0081 (17)0.0042 (17)
C150.0321 (19)0.0322 (18)0.049 (2)−0.0054 (15)−0.0136 (18)−0.0035 (17)
C160.037 (2)0.050 (2)0.036 (2)−0.0015 (17)−0.0137 (17)0.0079 (17)
C170.053 (2)0.045 (2)0.051 (3)−0.0016 (18)−0.015 (2)−0.0030 (19)
C180.062 (3)0.061 (3)0.068 (3)−0.024 (2)−0.032 (2)0.006 (2)
C190.053 (3)0.068 (3)0.065 (3)−0.006 (2)−0.021 (2)−0.018 (2)
C200.053 (3)0.079 (3)0.080 (3)0.008 (2)−0.015 (3)−0.024 (3)
Cu1—N3i2.023 (3)C4—H40.9300
Cu1—N32.023 (3)C5—H50.9300
Cu1—N1i2.047 (3)C6—C101.370 (4)
Cu1—N12.047 (3)C6—C71.390 (4)
Cu1—O12.558 (3)C7—C81.373 (5)
Cu1—O1i2.558 (3)C7—H70.9300
S1—C31.754 (3)C8—H80.9300
S1—C61.772 (3)C9—C101.375 (5)
S2—C131.757 (3)C9—H90.9300
S2—C161.775 (3)C10—H100.9300
O1—N51.231 (3)C11—C121.366 (4)
O2—N51.238 (4)C11—H110.9300
O3—N51.216 (4)C12—C131.387 (4)
N1—C51.331 (4)C12—H120.9300
N1—C11.348 (4)C13—C141.397 (4)
N2—C81.326 (4)C14—C151.367 (4)
N2—C91.334 (4)C14—H140.9300
N3—C151.344 (4)C15—H150.9300
N3—C111.347 (4)C16—C171.367 (4)
N4—C201.326 (5)C16—C191.374 (5)
N4—C181.329 (5)C17—C181.372 (5)
C1—C21.365 (4)C17—H170.9300
C1—H10.9300C18—H180.9300
C2—C31.383 (4)C19—C201.375 (5)
C2—H20.9300C19—H190.9300
C3—C41.383 (4)C20—H200.9300
C4—C51.370 (4)
N3i—Cu1—N3180.000 (1)C10—C6—S1119.4 (3)
N3i—Cu1—N1i87.75 (10)C7—C6—S1122.4 (3)
N3—Cu1—N1i92.25 (10)C8—C7—C6117.8 (3)
N3i—Cu1—N192.25 (10)C8—C7—H7121.1
N3—Cu1—N187.75 (10)C6—C7—H7121.1
N1i—Cu1—N1180.00 (14)N2—C8—C7125.3 (3)
N3i—Cu1—O186.21 (9)N2—C8—H8117.3
N3—Cu1—O193.79 (9)C7—C8—H8117.3
N1i—Cu1—O191.99 (9)N2—C9—C10124.3 (3)
N1—Cu1—O188.01 (9)N2—C9—H9117.9
N3i—Cu1—O1i93.79 (9)C10—C9—H9117.9
N3—Cu1—O1i86.21 (9)C6—C10—C9119.0 (3)
N1i—Cu1—O1i88.01 (9)C6—C10—H10120.5
N1—Cu1—O1i91.99 (9)C9—C10—H10120.5
O1—Cu1—O1i180.000 (1)N3—C11—C12123.8 (3)
C3—S1—C6103.18 (15)N3—C11—H11118.1
C13—S2—C16101.57 (15)C12—C11—H11118.1
N5—O1—Cu1159.3 (2)C11—C12—C13119.2 (3)
C5—N1—C1116.5 (3)C11—C12—H12120.4
C5—N1—Cu1122.5 (2)C13—C12—H12120.4
C1—N1—Cu1120.4 (2)C12—C13—C14117.5 (3)
C8—N2—C9115.3 (3)C12—C13—S2124.7 (3)
C15—N3—C11116.8 (3)C14—C13—S2117.8 (3)
C15—N3—Cu1121.7 (2)C15—C14—C13119.6 (3)
C11—N3—Cu1121.4 (2)C15—C14—H14120.2
C20—N4—C18115.0 (3)C13—C14—H14120.2
O3—N5—O1122.4 (4)N3—C15—C14123.1 (3)
O3—N5—O2119.9 (4)N3—C15—H15118.4
O1—N5—O2117.7 (3)C14—C15—H15118.4
N1—C1—C2122.9 (3)C17—C16—C19117.9 (3)
N1—C1—H1118.5C17—C16—S2121.4 (3)
C2—C1—H1118.5C19—C16—S2120.7 (3)
C1—C2—C3120.0 (3)C16—C17—C18119.1 (4)
C1—C2—H2120.0C16—C17—H17120.4
C3—C2—H2120.0C18—C17—H17120.4
C4—C3—C2117.2 (3)N4—C18—C17124.5 (4)
C4—C3—S1125.1 (3)N4—C18—H18117.7
C2—C3—S1117.7 (2)C17—C18—H18117.7
C5—C4—C3119.3 (3)C16—C19—C20118.4 (4)
C5—C4—H4120.4C16—C19—H19120.8
C3—C4—H4120.4C20—C19—H19120.8
N1—C5—C4123.9 (3)N4—C20—C19125.0 (4)
N1—C5—H5118.1N4—C20—H20117.5
C4—C5—H5118.1C19—C20—H20117.5
C10—C6—C7118.1 (3)
N3i—Cu1—O1—N5−120.2 (7)C3—S1—C6—C10−127.2 (3)
N3—Cu1—O1—N559.8 (7)C3—S1—C6—C755.2 (3)
N1i—Cu1—O1—N5−32.6 (7)C10—C6—C7—C82.2 (5)
N1—Cu1—O1—N5147.4 (7)S1—C6—C7—C8179.8 (3)
N3—Cu1—N1—C5−89.3 (3)C9—N2—C8—C71.1 (6)
O1—Cu1—N1—C5176.8 (3)C6—C7—C8—N2−3.0 (6)
O1i—Cu1—N1—C5−3.2 (3)C8—N2—C9—C101.6 (6)
N3i—Cu1—N1—C1−98.5 (2)C7—C6—C10—C90.2 (5)
N3—Cu1—N1—C181.5 (2)S1—C6—C10—C9−177.4 (3)
O1—Cu1—N1—C1−12.3 (2)N2—C9—C10—C6−2.3 (6)
O1i—Cu1—N1—C1167.7 (2)C15—N3—C11—C12−0.6 (4)
N1i—Cu1—N3—C1557.4 (2)Cu1—N3—C11—C12176.5 (2)
N1—Cu1—N3—C15−122.6 (2)N3—C11—C12—C130.0 (5)
O1—Cu1—N3—C15−34.7 (2)C11—C12—C13—C140.5 (5)
O1i—Cu1—N3—C15145.3 (2)C11—C12—C13—S2178.0 (2)
N1i—Cu1—N3—C11−119.5 (2)C16—S2—C13—C1223.8 (3)
N1—Cu1—N3—C1160.5 (2)C16—S2—C13—C14−158.6 (3)
O1—Cu1—N3—C11148.3 (2)C12—C13—C14—C15−0.3 (5)
O1i—Cu1—N3—C11−31.7 (2)S2—C13—C14—C15−178.0 (2)
Cu1—O1—N5—O3166.9 (5)C11—N3—C15—C140.8 (4)
Cu1—O1—N5—O2−14.5 (9)Cu1—N3—C15—C14−176.3 (2)
C5—N1—C1—C23.5 (5)C13—C14—C15—N3−0.4 (5)
Cu1—N1—C1—C2−167.9 (2)C13—S2—C16—C17−111.6 (3)
N1—C1—C2—C30.1 (5)C13—S2—C16—C1969.8 (3)
C1—C2—C3—C4−3.6 (5)C19—C16—C17—C18−0.2 (5)
C1—C2—C3—S1177.4 (2)S2—C16—C17—C18−179.0 (3)
C6—S1—C3—C416.6 (3)C20—N4—C18—C17−0.3 (6)
C6—S1—C3—C2−164.5 (3)C16—C17—C18—N4−0.3 (6)
C2—C3—C4—C53.5 (5)C17—C16—C19—C201.2 (5)
S1—C3—C4—C5−177.6 (3)S2—C16—C19—C20179.9 (3)
C1—N1—C5—C4−3.6 (5)C18—N4—C20—C191.4 (6)
Cu1—N1—C5—C4167.5 (2)C16—C19—C20—N4−1.9 (7)
C3—C4—C5—N10.2 (5)
D—H···AD—HH···AD···AD—H···A
C11—H11···O1i0.932.523.063 (4)118
C5—H5···O2i0.932.493.419 (4)174
C5—H5···O1i0.932.513.193 (4)130
C14—H14···N4ii0.932.473.279 (5)146
C1—H1···O10.932.273.008 (4)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C11—H11⋯O1i0.932.523.063 (4)118
C5—H5⋯O2i0.932.493.419 (4)174
C5—H5⋯O1i0.932.513.193 (4)130
C14—H14⋯N4ii0.932.473.279 (5)146
C1—H1⋯O10.932.273.008 (4)135

Symmetry codes: (i) ; (ii) .

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