| Literature DB >> 21578943 |
Geraldo M de Lima, Edward R T Tiekink, James L Wardell, Solange M S V Wardell.
Abstract
The title hydrate, C(10)H(10)N(4)·H(2)O, shows a small twist in the hydro-zone derivative, the dihedral angle between the pyridine and pyrrole rings being 11.08 (12)°. The pyridine and pyrrole N atoms lie to the same side of the mol-ecule being sustained in place by hydrogen-bonding inter-actions with the water mol-ecule. Further inter-molecular O-H⋯N and N-H⋯O hydrogen bonding leads to the formation of supra-molecular arrays in the ab plane.Entities:
Year: 2009 PMID: 21578943 PMCID: PMC2971851 DOI: 10.1107/S1600536809050296
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H10N4·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 18744 reflections |
| θ = 2.9–27.5° | |
| µ = 0.09 mm−1 | |
| β = 103.300 (3)° | Block, colourless |
| 0.24 × 0.22 × 0.04 mm | |
| Nonius KappaCCD area-detector diffractometer | 1680 independent reflections |
| Radiation source: Enraf Nonius FR591 rotating anode | 1636 reflections with |
| 10 cm confocal mirrors | |
| Detector resolution: 9.091 pixels mm-1 | θmax = 25.0°, θmin = 3.2° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 3068 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1680 reflections | (Δ/σ)max < 0.001 |
| 149 parameters | Δρmax = 0.19 e Å−3 |
| 4 restraints | Δρmin = −0.24 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1W | 0.0268 (3) | 0.5726 (2) | 0.74096 (6) | 0.0234 (4) | |
| H1W | 0.088 (5) | 0.635 (3) | 0.7695 (7) | 0.035* | |
| H2W | −0.071 (4) | 0.501 (3) | 0.7507 (11) | 0.035* | |
| N1 | 0.2897 (3) | 0.7646 (2) | 0.83791 (7) | 0.0221 (4) | |
| N2 | 0.5539 (4) | 0.8844 (2) | 0.78669 (8) | 0.0218 (4) | |
| H2N | 0.694 (3) | 0.935 (3) | 0.7844 (10) | 0.026* | |
| N3 | 0.3760 (4) | 0.8612 (2) | 0.73892 (7) | 0.0205 (4) | |
| N4 | 0.0207 (4) | 0.7784 (2) | 0.64316 (7) | 0.0205 (4) | |
| H4N | 0.000 (5) | 0.726 (3) | 0.6740 (6) | 0.025* | |
| C1 | 0.4955 (4) | 0.8541 (3) | 0.83784 (8) | 0.0193 (4) | |
| C2 | 0.2360 (4) | 0.7344 (3) | 0.88823 (8) | 0.0238 (5) | |
| H2 | 0.0904 | 0.6710 | 0.8886 | 0.029* | |
| C3 | 0.3790 (5) | 0.7898 (3) | 0.93898 (9) | 0.0257 (5) | |
| H3 | 0.3346 | 0.7654 | 0.9735 | 0.031* | |
| C4 | 0.5912 (5) | 0.8829 (3) | 0.93755 (9) | 0.0250 (5) | |
| H4 | 0.6942 | 0.9245 | 0.9716 | 0.030* | |
| C5 | 0.6526 (4) | 0.9152 (3) | 0.88711 (9) | 0.0229 (5) | |
| H5 | 0.7981 | 0.9774 | 0.8858 | 0.027* | |
| C6 | 0.4278 (4) | 0.8846 (3) | 0.69071 (8) | 0.0204 (5) | |
| H6 | 0.5870 | 0.9191 | 0.6882 | 0.024* | |
| C7 | 0.2393 (4) | 0.8574 (3) | 0.64086 (8) | 0.0196 (5) | |
| C8 | −0.1198 (4) | 0.7629 (3) | 0.59024 (8) | 0.0230 (5) | |
| H8 | −0.2775 | 0.7109 | 0.5804 | 0.028* | |
| C9 | 0.0049 (4) | 0.8353 (3) | 0.55333 (8) | 0.0240 (5) | |
| H9 | −0.0522 | 0.8433 | 0.5137 | 0.029* | |
| C10 | 0.2326 (5) | 0.8955 (3) | 0.58482 (8) | 0.0218 (5) | |
| H10 | 0.3571 | 0.9512 | 0.5705 | 0.026* |
| O1W | 0.0245 (9) | 0.0239 (7) | 0.0224 (7) | −0.0061 (6) | 0.0065 (7) | 0.0001 (6) |
| N1 | 0.0242 (10) | 0.0196 (9) | 0.0231 (9) | −0.0003 (8) | 0.0066 (8) | 0.0013 (7) |
| N2 | 0.0194 (10) | 0.0269 (10) | 0.0200 (8) | −0.0038 (8) | 0.0060 (8) | 0.0001 (7) |
| N3 | 0.0214 (9) | 0.0194 (8) | 0.0199 (8) | −0.0005 (7) | 0.0027 (8) | 0.0005 (7) |
| N4 | 0.0229 (10) | 0.0191 (8) | 0.0200 (8) | −0.0011 (8) | 0.0062 (7) | 0.0014 (7) |
| C1 | 0.0202 (11) | 0.0159 (9) | 0.0217 (10) | 0.0028 (9) | 0.0048 (9) | 0.0013 (8) |
| C2 | 0.0269 (12) | 0.0195 (9) | 0.0278 (10) | 0.0027 (9) | 0.0120 (10) | 0.0032 (9) |
| C3 | 0.0361 (13) | 0.0211 (10) | 0.0215 (9) | 0.0040 (10) | 0.0102 (10) | 0.0029 (9) |
| C4 | 0.0335 (13) | 0.0191 (10) | 0.0198 (10) | 0.0034 (10) | 0.0007 (10) | −0.0001 (9) |
| C5 | 0.0251 (13) | 0.0178 (9) | 0.0241 (10) | 0.0005 (9) | 0.0025 (10) | 0.0003 (8) |
| C6 | 0.0209 (11) | 0.0176 (10) | 0.0241 (9) | −0.0001 (8) | 0.0080 (10) | −0.0016 (8) |
| C7 | 0.0221 (12) | 0.0166 (9) | 0.0210 (10) | 0.0006 (9) | 0.0069 (9) | 0.0005 (8) |
| C8 | 0.0226 (12) | 0.0209 (10) | 0.0243 (9) | −0.0008 (9) | 0.0027 (9) | −0.0020 (8) |
| C9 | 0.0301 (13) | 0.0219 (10) | 0.0179 (9) | 0.0025 (9) | 0.0013 (9) | 0.0005 (9) |
| C10 | 0.0243 (12) | 0.0188 (10) | 0.0234 (10) | −0.0005 (9) | 0.0080 (9) | −0.0008 (8) |
| O1W—H1W | 0.842 (10) | C3—C4 | 1.392 (4) |
| O1W—H2W | 0.840 (10) | C3—H3 | 0.9500 |
| N1—C1 | 1.340 (3) | C4—C5 | 1.375 (3) |
| N1—C2 | 1.350 (3) | C4—H4 | 0.9500 |
| N2—N3 | 1.364 (3) | C5—H5 | 0.9500 |
| N2—C1 | 1.382 (3) | C6—C7 | 1.435 (3) |
| N2—H2N | 0.886 (10) | C6—H6 | 0.9500 |
| N3—C6 | 1.289 (3) | C7—C10 | 1.390 (3) |
| N4—C8 | 1.357 (3) | C8—C9 | 1.375 (3) |
| N4—C7 | 1.380 (3) | C8—H8 | 0.9500 |
| N4—H4N | 0.879 (10) | C9—C10 | 1.411 (3) |
| C1—C5 | 1.396 (3) | C9—H9 | 0.9500 |
| C2—C3 | 1.377 (3) | C10—H10 | 0.9500 |
| C2—H2 | 0.9500 | ||
| H1W—O1W—H2W | 107 (2) | C3—C4—H4 | 119.8 |
| C1—N1—C2 | 117.39 (19) | C4—C5—C1 | 118.3 (2) |
| N3—N2—C1 | 118.06 (17) | C4—C5—H5 | 120.9 |
| N3—N2—H2N | 119.3 (16) | C1—C5—H5 | 120.9 |
| C1—N2—H2N | 121.9 (16) | N3—C6—C7 | 118.4 (2) |
| C6—N3—N2 | 119.13 (18) | N3—C6—H6 | 120.8 |
| C8—N4—C7 | 109.25 (17) | C7—C6—H6 | 120.8 |
| C8—N4—H4N | 127.9 (16) | N4—C7—C10 | 107.7 (2) |
| C7—N4—H4N | 121.4 (17) | N4—C7—C6 | 121.43 (19) |
| N1—C1—N2 | 118.01 (18) | C10—C7—C6 | 130.8 (2) |
| N1—C1—C5 | 122.68 (19) | N4—C8—C9 | 108.4 (2) |
| N2—C1—C5 | 119.31 (19) | N4—C8—H8 | 125.8 |
| N1—C2—C3 | 124.2 (2) | C9—C8—H8 | 125.8 |
| N1—C2—H2 | 117.9 | C8—C9—C10 | 107.86 (18) |
| C3—C2—H2 | 117.9 | C8—C9—H9 | 126.1 |
| C2—C3—C4 | 117.1 (2) | C10—C9—H9 | 126.1 |
| C2—C3—H3 | 121.4 | C7—C10—C9 | 106.7 (2) |
| C4—C3—H3 | 121.4 | C7—C10—H10 | 126.6 |
| C5—C4—C3 | 120.3 (2) | C9—C10—H10 | 126.6 |
| C5—C4—H4 | 119.8 | ||
| C1—N2—N3—C6 | −178.42 (18) | N2—N3—C6—C7 | 179.22 (17) |
| C2—N1—C1—N2 | 179.37 (18) | C8—N4—C7—C10 | 1.2 (2) |
| C2—N1—C1—C5 | 0.2 (3) | C8—N4—C7—C6 | −177.71 (19) |
| N3—N2—C1—N1 | 15.4 (3) | N3—C6—C7—N4 | −11.2 (3) |
| N3—N2—C1—C5 | −165.42 (17) | N3—C6—C7—C10 | 170.2 (2) |
| C1—N1—C2—C3 | 0.0 (3) | C7—N4—C8—C9 | −1.2 (2) |
| N1—C2—C3—C4 | 0.2 (3) | N4—C8—C9—C10 | 0.8 (2) |
| C2—C3—C4—C5 | −0.6 (3) | N4—C7—C10—C9 | −0.6 (2) |
| C3—C4—C5—C1 | 0.8 (3) | C6—C7—C10—C9 | 178.1 (2) |
| N1—C1—C5—C4 | −0.6 (3) | C8—C9—C10—C7 | −0.1 (2) |
| N2—C1—C5—C4 | −179.75 (18) |
| H··· | ||||
| O1w—H1w···N1 | 0.842 (10) | 2.037 (11) | 2.870 (2) | 170 (3) |
| O1w—H2w···N3i | 0.840 (10) | 2.078 (12) | 2.899 (3) | 166 (3) |
| N2—H2n···O1wii | 0.886 (10) | 2.092 (12) | 2.959 (3) | 166 (2) |
| N4—H4n···O1w | 0.879 (10) | 1.971 (11) | 2.831 (2) | 165 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1w—H1w⋯N1 | 0.84 (1) | 2.04 (1) | 2.870 (2) | 170 (3) |
| O1w—H2w⋯N3i | 0.84 (1) | 2.08 (1) | 2.899 (3) | 166 (3) |
| N2—H2n⋯O1wii | 0.89 (1) | 2.09 (1) | 2.959 (3) | 166 (2) |
| N4—H4n⋯O1w | 0.88 (1) | 1.97 (1) | 2.831 (2) | 165 (2) |
Symmetry codes: (i) ; (ii) .