Literature DB >> 21578925

1,4-Bis(2-nitro-phen-oxy)butane.

Perla Elizondo1, Cecilia Rodríguez de Barbarín, Blanca Nájera, Nancy Pérez.   

Abstract

The asymmetric unit of the title compound, C(16)H(16)N(2)O(6), contains one-half mol-ecule, the mid-point of the central C-C bond being located on a crystallographic inversion center. The crystal structure shows weak inter-actions between the O atoms of the nitro groups and two different C-H groups of the benzene rings. The extended weak hydrogen-bond formation, involving the NO(2) groups, generates an infinite three-dimensional network.

Entities:  

Year:  2009        PMID: 21578925      PMCID: PMC2972046          DOI: 10.1107/S1600536809048909

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Han & Zhen (2005 ▶); Naz et al. (2007 ▶); Zhang et al. (2007 ▶). For recent examples of complexes with macrocyclic ligands, including diether subunits, see: Fernández et al. (2008 ▶); Platas-Iglesias et al. (2005 ▶); Tas et al. (2006 ▶).

Experimental

Crystal data

C16H16N2O6 M = 332.31 Monoclinic, a = 7.7977 (8) Å b = 13.888 (2) Å c = 7.6729 (8) Å β = 110.866 (6)° V = 776.4 (2) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.7 × 0.6 × 0.4 mm

Data collection

Bruker P4 diffractometer Absorption correction: none 3850 measured reflections 2256 independent reflections 1752 reflections with I > 2σ(I) R int = 0.030 3 standard reflections every 97 reflections intensity decay: 2.3%

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.130 S = 1.06 2256 reflections 110 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.19 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: SHELXTL-Plus (Sheldrick, 2008 ▶); program(s) used to solve structure: SHELXTL-Plus; program(s) used to refine structure: SHELXTL-Plus; molecular graphics: SHELXTL-Plus and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL-Plus. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809048909/im2156sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809048909/im2156Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16N2O6F(000) = 348
Mr = 332.31Dx = 1.421 Mg m3
Monoclinic, P21/cMelting point = 442–443 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 7.7977 (8) ÅCell parameters from 85 reflections
b = 13.888 (2) Åθ = 5.2–12.4°
c = 7.6729 (8) ŵ = 0.11 mm1
β = 110.866 (6)°T = 296 K
V = 776.4 (2) Å3Block, colorless
Z = 20.7 × 0.6 × 0.4 mm
Bruker P4 diffractometerRint = 0.030
Radiation source: fine-focus sealed tubeθmax = 30.0°, θmin = 2.9°
graphiteh = −10→10
ω scank = −1→19
3850 measured reflectionsl = −10→5
2256 independent reflections3 standard reflections every 97 reflections
1752 reflections with I > 2σ(I) intensity decay: 2.3%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0452P)2 + 0.1839P] where P = (Fo2 + 2Fc2)/3
2256 reflections(Δ/σ)max < 0.001
110 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.19 e Å3
Experimental. Experimental absorption correction were not applied because the molecule is purely organic, and no better structure refinement was obtained.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.19481 (19)0.21566 (10)0.9250 (3)0.0923 (5)
O20.32880 (19)0.33983 (9)0.8740 (2)0.0827 (4)
O30.28310 (12)0.07009 (6)0.74649 (13)0.0474 (3)
N10.32195 (16)0.25370 (9)0.89929 (17)0.0506 (3)
C10.47947 (16)0.19562 (9)0.90340 (16)0.0392 (3)
C20.65074 (18)0.23662 (10)0.98583 (19)0.0487 (3)
H2A0.66180.29791.03760.058*
C30.80442 (19)0.18694 (12)0.9912 (2)0.0575 (4)
H3A0.92050.21361.04780.069*
C40.7837 (2)0.09688 (12)0.9114 (2)0.0579 (4)
H4A0.88740.06340.91260.070*
C50.61331 (19)0.05505 (10)0.8296 (2)0.0497 (3)
H5A0.6038−0.00600.77720.060*
C60.45534 (16)0.10362 (9)0.82495 (16)0.0388 (3)
C70.2563 (2)−0.01938 (9)0.6464 (2)0.0495 (3)
H7A0.3192−0.07120.72940.059*
H7B0.3044−0.01510.54620.059*
C80.0531 (2)−0.03792 (10)0.5688 (2)0.0534 (4)
H8A0.0081−0.04180.66990.064*
H8B0.0315−0.09910.50630.064*
U11U22U33U12U13U23
O10.0717 (8)0.0766 (9)0.1558 (14)−0.0089 (7)0.0739 (9)−0.0235 (9)
O20.0880 (9)0.0461 (6)0.1202 (12)0.0135 (6)0.0448 (8)0.0006 (7)
O30.0423 (5)0.0429 (5)0.0527 (5)−0.0051 (4)0.0117 (4)−0.0121 (4)
N10.0481 (6)0.0500 (6)0.0554 (7)−0.0005 (5)0.0205 (5)−0.0119 (5)
C10.0392 (6)0.0400 (6)0.0386 (6)−0.0007 (4)0.0142 (5)−0.0014 (5)
C20.0467 (7)0.0481 (7)0.0479 (7)−0.0098 (5)0.0125 (5)−0.0025 (5)
C30.0388 (6)0.0690 (9)0.0584 (8)−0.0073 (6)0.0098 (6)0.0055 (7)
C40.0425 (7)0.0699 (9)0.0606 (9)0.0146 (6)0.0174 (6)0.0126 (7)
C50.0506 (7)0.0459 (7)0.0510 (7)0.0100 (5)0.0160 (6)0.0012 (6)
C60.0393 (6)0.0388 (6)0.0365 (5)−0.0013 (4)0.0111 (4)0.0003 (4)
C70.0574 (8)0.0354 (6)0.0501 (7)−0.0045 (5)0.0122 (6)−0.0054 (5)
C80.0603 (8)0.0385 (6)0.0520 (8)−0.0123 (6)0.0085 (6)0.0006 (5)
O1—N11.2000 (16)C4—C51.380 (2)
O2—N11.2159 (17)C4—H4A0.9300
O3—C61.3443 (15)C5—C61.3937 (18)
O3—C71.4363 (15)C5—H5A0.9300
N1—C11.4604 (16)C7—C81.504 (2)
C1—C21.3807 (17)C7—H7A0.9700
C1—C61.3962 (17)C7—H7B0.9700
C2—C31.371 (2)C8—C8i1.512 (3)
C2—H2A0.9300C8—H8A0.9600
C3—C41.377 (2)C8—H8B0.9601
C3—H3A0.9300
C6—O3—C7118.09 (10)C4—C5—H5A119.8
O1—N1—O2123.04 (14)C6—C5—H5A119.8
O1—N1—C1119.40 (13)O3—C6—C5125.22 (12)
O2—N1—C1117.54 (12)O3—C6—C1118.02 (11)
C2—C1—C6122.32 (11)C5—C6—C1116.73 (11)
C2—C1—N1116.81 (11)O3—C7—C8106.96 (11)
C6—C1—N1120.86 (11)O3—C7—H7A110.3
C3—C2—C1119.93 (13)C8—C7—H7A110.3
C3—C2—H2A120.0O3—C7—H7B110.3
C1—C2—H2A120.0C8—C7—H7B110.3
C2—C3—C4118.77 (13)H7A—C7—H7B108.6
C2—C3—H3A120.6C7—C8—C8i113.25 (14)
C4—C3—H3A120.6C7—C8—H8A109.1
C3—C4—C5121.74 (13)C8i—C8—H8A109.7
C3—C4—H4A119.1C7—C8—H8B108.7
C5—C4—H4A119.1C8i—C8—H8B108.2
C4—C5—C6120.48 (13)H8A—C8—H8B107.7
O1—N1—C1—C2−141.19 (16)C7—O3—C6—C1172.71 (11)
O2—N1—C1—C237.07 (18)C4—C5—C6—O3178.93 (13)
O1—N1—C1—C639.59 (19)C4—C5—C6—C11.0 (2)
O2—N1—C1—C6−142.15 (14)C2—C1—C6—O3−179.48 (12)
C6—C1—C2—C30.5 (2)N1—C1—C6—O3−0.30 (17)
N1—C1—C2—C3−178.69 (13)C2—C1—C6—C5−1.43 (18)
C1—C2—C3—C40.8 (2)N1—C1—C6—C5177.75 (12)
C2—C3—C4—C5−1.2 (2)C6—O3—C7—C8−178.18 (11)
C3—C4—C5—C60.2 (2)O3—C7—C8—C8i62.6 (2)
C7—O3—C6—C5−5.15 (19)
D—H···AD—HH···AD···AD—H···A
C3—H3A···O1ii0.932.633.284 (2)128
C5—H5A···O2iii0.932.583.476 (2)163
C8—H8B···O3i0.962.562.900 (2)101
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3A⋯O1i 0.932.633.284 (2)128
C5—H5A⋯O2ii 0.932.583.476 (2)163

Symmetry codes: (i) ; (ii) ; (iii) .

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