Literature DB >> 21578913

7-Chloro-4-[(E)-(3-chloro-benzyl-idene)hydrazinyl]-1λ-quinolinium 3-chloro-benzoate.

Marcus V N de Souza, R Alan Howie, Edward R T Tiekink, James L Wardell, Solange M S V Wardell.   

Abstract

The title salt, C(16)H(12)Cl(2)N(3) (+)·C(7)H(4)ClO(2) (-), features a non-planar cation, the dihedral angle between the quinolinium and benzene residues being 18.98 (10)°. The cation adopts an E conformation about the C-N bond, and the amine group is oriented towards the quinolinium residue. In the crystal, N-H⋯O hydrogen bonds link two cations with two anions, forming a 20-membered {⋯OCO⋯HNC(3)NH}(2) synthon. The dimeric units are connected into a linear supra-molecular chain along [100] via π-π inter-actions [centroid-centroid distance = 3.5625 (13) Å].

Entities:  

Year:  2009        PMID: 21578913      PMCID: PMC2972174          DOI: 10.1107/S1600536809049794

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on the pharmacological activity of quinoline derivatives, see: Elslager et al. (1969 ▶); Font et al. (1997 ▶); Kaminsky & Meltzer (1968 ▶); Musiol et al. (2006 ▶); Nakamura et al. (1999 ▶); Palmer et al. (1993 ▶); Ridley (2002 ▶); Sloboda et al. (1991 ▶); Tanenbaum & Tuffanelli (1980 ▶); Warshakoon et al. (2006 ▶). For recent studies into quinoline-based anti-malarials, see: Andrade et al. (2007 ▶); Cunico et al. (2006 ▶); da Silva et al. (2003 ▶); de Souza (2005 ▶). For a related crystallographic study on neutral species related to the title compound, see: Kaiser et al. (2009 ▶).

Experimental

Crystal data

C16H12Cl2N3C7H4ClO2 M = 472.74 Triclinic, a = 8.8777 (2) Å b = 10.7064 (3) Å c = 11.9807 (3) Å α = 112.5318 (12)° β = 91.6382 (15)° γ = 97.4362 (15)° V = 1039.17 (5) Å3 Z = 2 Mo Kα radiation μ = 0.47 mm−1 T = 120 K 0.06 × 0.04 × 0.03 mm

Data collection

Nonius KappaCCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.922, T max = 1.000 16836 measured reflections 4746 independent reflections 3949 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.104 S = 1.07 4746 reflections 283 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.45 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809049794/hg2605sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809049794/hg2605Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12Cl2N3+·C7H4ClO2Z = 2
Mr = 472.74F(000) = 484
Triclinic, P1Dx = 1.511 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.8777 (2) ÅCell parameters from 16230 reflections
b = 10.7064 (3) Åθ = 2.9–27.5°
c = 11.9807 (3) ŵ = 0.47 mm1
α = 112.5318 (12)°T = 120 K
β = 91.6382 (15)°Block, yellow
γ = 97.4362 (15)°0.06 × 0.04 × 0.03 mm
V = 1039.17 (5) Å3
Nonius KappaCCD area-detector diffractometer4746 independent reflections
Radiation source: Enraf Nonius FR591 rotating anode3949 reflections with I > 2σ(I)
10 cm confocal mirrorsRint = 0.044
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 3.1°
φ and ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −13→13
Tmin = 0.922, Tmax = 1.000l = −15→15
16836 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0078P)2 + 1.9095P] where P = (Fo2 + 2Fc2)/3
4746 reflections(Δ/σ)max = 0.001
283 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.45 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.20629 (7)−0.15682 (6)0.12224 (5)0.02306 (14)
Cl20.85051 (7)0.10932 (6)1.02577 (5)0.02465 (15)
N10.0669 (2)−0.2783 (2)0.43607 (18)0.0167 (4)
H1N−0.007 (3)−0.349 (3)0.417 (2)0.020*
N20.3644 (2)0.08652 (19)0.57378 (17)0.0161 (4)
H2N0.35800.14990.54480.019*
N30.4690 (2)0.1101 (2)0.67007 (17)0.0165 (4)
C10.1764 (3)−0.2566 (2)0.5229 (2)0.0176 (5)
H10.1815−0.32460.55500.021*
C20.2826 (3)−0.1393 (2)0.5677 (2)0.0169 (5)
H20.3619−0.12900.62690.020*
C30.2724 (2)−0.0350 (2)0.5250 (2)0.0150 (4)
C40.1584 (2)−0.0590 (2)0.4281 (2)0.0152 (4)
C50.1406 (3)0.0354 (2)0.3736 (2)0.0160 (4)
H50.20700.12030.40120.019*
C60.0291 (3)0.0063 (2)0.2819 (2)0.0178 (5)
H60.01730.07090.24690.021*
C7−0.0678 (3)−0.1204 (2)0.2400 (2)0.0174 (5)
C8−0.0558 (3)−0.2149 (2)0.2900 (2)0.0163 (4)
H8−0.1226−0.29960.26070.020*
C90.0570 (2)−0.1842 (2)0.3852 (2)0.0148 (4)
C100.5321 (3)0.2345 (2)0.7240 (2)0.0183 (5)
H100.50720.30080.69480.022*
C110.6420 (3)0.2766 (2)0.8300 (2)0.0190 (5)
C120.6897 (3)0.1816 (2)0.8718 (2)0.0178 (5)
H120.65190.08690.83130.021*
C130.7928 (3)0.2280 (2)0.9730 (2)0.0197 (5)
C140.8501 (3)0.3651 (3)1.0350 (2)0.0262 (6)
H140.92080.39451.10430.031*
C150.8015 (3)0.4585 (3)0.9931 (2)0.0316 (6)
H150.83880.55321.03460.038*
C160.6988 (3)0.4153 (3)0.8908 (2)0.0274 (6)
H160.66730.48030.86250.033*
Cl30.12274 (6)0.37851 (6)0.30843 (6)0.02426 (14)
O10.67939 (19)0.66372 (16)0.43847 (15)0.0212 (4)
O20.84256 (18)0.51324 (17)0.36860 (16)0.0216 (4)
C170.7100 (3)0.5460 (2)0.3827 (2)0.0165 (5)
C180.5784 (3)0.4312 (2)0.3217 (2)0.0164 (4)
C190.4291 (3)0.4533 (2)0.3442 (2)0.0173 (5)
H190.40910.53820.40190.021*
C200.3100 (3)0.3500 (2)0.2816 (2)0.0182 (5)
C210.3357 (3)0.2254 (2)0.1967 (2)0.0218 (5)
H210.25260.15640.15350.026*
C220.4848 (3)0.2028 (3)0.1756 (2)0.0243 (5)
H220.50410.11750.11830.029*
C230.6058 (3)0.3051 (2)0.2385 (2)0.0206 (5)
H230.70770.28890.22450.025*
U11U22U33U12U13U23
Cl10.0229 (3)0.0245 (3)0.0229 (3)−0.0014 (2)−0.0066 (2)0.0127 (2)
Cl20.0323 (3)0.0204 (3)0.0219 (3)0.0074 (2)−0.0037 (2)0.0082 (2)
N10.0171 (10)0.0126 (9)0.0215 (10)0.0015 (7)0.0001 (8)0.0081 (8)
N20.0163 (9)0.0142 (9)0.0183 (10)0.0005 (7)−0.0038 (7)0.0080 (8)
N30.0153 (9)0.0180 (10)0.0158 (9)0.0014 (7)−0.0011 (7)0.0067 (8)
C10.0199 (11)0.0147 (11)0.0211 (12)0.0062 (9)0.0018 (9)0.0092 (9)
C20.0163 (11)0.0156 (11)0.0181 (11)0.0020 (9)−0.0011 (9)0.0061 (9)
C30.0127 (10)0.0143 (11)0.0177 (11)0.0041 (8)0.0035 (8)0.0051 (9)
C40.0141 (10)0.0159 (11)0.0165 (11)0.0047 (8)0.0028 (8)0.0065 (9)
C50.0173 (11)0.0125 (10)0.0178 (11)0.0025 (8)0.0033 (9)0.0052 (9)
C60.0210 (12)0.0159 (11)0.0188 (11)0.0043 (9)0.0030 (9)0.0087 (9)
C70.0162 (11)0.0200 (12)0.0156 (11)0.0033 (9)0.0003 (9)0.0067 (9)
C80.0161 (11)0.0132 (10)0.0177 (11)−0.0001 (8)0.0014 (9)0.0048 (9)
C90.0159 (11)0.0128 (10)0.0162 (11)0.0025 (8)0.0019 (8)0.0060 (9)
C100.0195 (11)0.0164 (11)0.0195 (12)0.0004 (9)−0.0005 (9)0.0085 (9)
C110.0211 (12)0.0179 (11)0.0179 (11)0.0009 (9)−0.0007 (9)0.0075 (9)
C120.0183 (11)0.0150 (11)0.0177 (11)−0.0006 (9)−0.0001 (9)0.0050 (9)
C130.0231 (12)0.0198 (12)0.0190 (12)0.0044 (9)0.0018 (9)0.0103 (10)
C140.0321 (14)0.0227 (13)0.0207 (12)−0.0044 (11)−0.0088 (10)0.0083 (10)
C150.0453 (17)0.0165 (12)0.0277 (14)−0.0068 (11)−0.0131 (12)0.0077 (11)
C160.0376 (15)0.0193 (12)0.0257 (13)−0.0007 (11)−0.0082 (11)0.0115 (11)
Cl30.0161 (3)0.0240 (3)0.0307 (3)0.0009 (2)−0.0005 (2)0.0094 (3)
O10.0227 (9)0.0133 (8)0.0253 (9)0.0007 (6)−0.0033 (7)0.0061 (7)
O20.0170 (8)0.0168 (8)0.0296 (10)0.0006 (6)−0.0019 (7)0.0085 (7)
C170.0195 (11)0.0154 (11)0.0166 (11)0.0018 (9)−0.0025 (9)0.0092 (9)
C180.0180 (11)0.0145 (11)0.0175 (11)−0.0012 (8)−0.0011 (9)0.0085 (9)
C190.0208 (11)0.0145 (11)0.0165 (11)0.0020 (9)−0.0003 (9)0.0065 (9)
C200.0168 (11)0.0195 (12)0.0205 (11)0.0012 (9)0.0002 (9)0.0108 (9)
C210.0222 (12)0.0180 (12)0.0208 (12)−0.0049 (9)−0.0012 (10)0.0054 (10)
C220.0279 (13)0.0158 (11)0.0233 (13)−0.0006 (10)0.0033 (10)0.0024 (10)
C230.0208 (12)0.0195 (12)0.0211 (12)0.0019 (9)0.0029 (9)0.0077 (10)
Cl1—C71.735 (2)C11—C161.395 (3)
Cl2—C131.744 (2)C11—C121.398 (3)
N1—C11.334 (3)C12—C131.383 (3)
N1—C91.373 (3)C12—H120.9500
N1—H1N0.89 (3)C13—C141.384 (3)
N2—C31.348 (3)C14—C151.386 (4)
N2—N31.383 (3)C14—H140.9500
N2—H2N0.8800C15—C161.392 (4)
N3—C101.277 (3)C15—H150.9500
C1—C21.379 (3)C16—H160.9500
C1—H10.9500Cl3—C201.745 (2)
C2—C31.407 (3)O1—C171.250 (3)
C2—H20.9500O2—C171.269 (3)
C3—C41.440 (3)C17—C181.517 (3)
C4—C91.416 (3)C18—C191.392 (3)
C4—C51.420 (3)C18—C231.394 (3)
C5—C61.371 (3)C19—C201.385 (3)
C5—H50.9500C19—H190.9500
C6—C71.408 (3)C20—C211.385 (3)
C6—H60.9500C21—C221.389 (4)
C7—C81.372 (3)C21—H210.9500
C8—C91.405 (3)C22—C231.392 (3)
C8—H80.9500C22—H220.9500
C10—C111.465 (3)C23—H230.9500
C10—H100.9500
C1—N1—C9120.8 (2)C16—C11—C10118.8 (2)
C1—N1—H1N119.7 (17)C12—C11—C10121.6 (2)
C9—N1—H1N119.0 (17)C13—C12—C11118.9 (2)
C3—N2—N3119.06 (18)C13—C12—H12120.6
C3—N2—H2N120.5C11—C12—H12120.6
N3—N2—H2N120.5C12—C13—C14122.4 (2)
C10—N3—N2114.66 (19)C12—C13—Cl2118.72 (18)
N1—C1—C2122.5 (2)C14—C13—Cl2118.83 (19)
N1—C1—H1118.8C13—C14—C15118.2 (2)
C2—C1—H1118.8C13—C14—H14120.9
C1—C2—C3119.4 (2)C15—C14—H14120.9
C1—C2—H2120.3C14—C15—C16120.9 (2)
C3—C2—H2120.3C14—C15—H15119.6
N2—C3—C2121.7 (2)C16—C15—H15119.6
N2—C3—C4119.7 (2)C15—C16—C11120.0 (2)
C2—C3—C4118.6 (2)C15—C16—H16120.0
C9—C4—C5117.9 (2)C11—C16—H16120.0
C9—C4—C3118.0 (2)O1—C17—O2125.9 (2)
C5—C4—C3124.1 (2)O1—C17—C18118.0 (2)
C6—C5—C4121.1 (2)O2—C17—C18116.1 (2)
C6—C5—H5119.4C19—C18—C23119.6 (2)
C4—C5—H5119.4C19—C18—C17120.1 (2)
C5—C6—C7119.3 (2)C23—C18—C17120.1 (2)
C5—C6—H6120.4C20—C19—C18119.3 (2)
C7—C6—H6120.4C20—C19—H19120.4
C8—C7—C6121.8 (2)C18—C19—H19120.4
C8—C7—Cl1119.40 (18)C19—C20—C21121.6 (2)
C6—C7—Cl1118.75 (17)C19—C20—Cl3119.25 (18)
C7—C8—C9118.8 (2)C21—C20—Cl3119.13 (18)
C7—C8—H8120.6C20—C21—C22119.1 (2)
C9—C8—H8120.6C20—C21—H21120.5
N1—C9—C8118.6 (2)C22—C21—H21120.5
N1—C9—C4120.5 (2)C21—C22—C23120.0 (2)
C8—C9—C4120.9 (2)C21—C22—H22120.0
N3—C10—C11121.2 (2)C23—C22—H22120.0
N3—C10—H10119.4C22—C23—C18120.4 (2)
C11—C10—H10119.4C22—C23—H23119.8
C16—C11—C12119.6 (2)C18—C23—H23119.8
C3—N2—N3—C10−168.3 (2)C11—C12—C13—C140.3 (4)
C9—N1—C1—C21.3 (3)C11—C12—C13—Cl2179.37 (18)
N1—C1—C2—C32.9 (3)C12—C13—C14—C150.0 (4)
N3—N2—C3—C2−1.5 (3)Cl2—C13—C14—C15−179.1 (2)
N3—N2—C3—C4177.33 (19)C13—C14—C15—C16−0.5 (4)
C1—C2—C3—N2173.8 (2)C14—C15—C16—C110.7 (4)
C1—C2—C3—C4−5.1 (3)C12—C11—C16—C15−0.4 (4)
N2—C3—C4—C9−175.6 (2)C10—C11—C16—C15178.9 (2)
C2—C3—C4—C93.3 (3)O1—C17—C18—C19−10.0 (3)
N2—C3—C4—C53.8 (3)O2—C17—C18—C19172.1 (2)
C2—C3—C4—C5−177.3 (2)O1—C17—C18—C23166.8 (2)
C9—C4—C5—C6−0.3 (3)O2—C17—C18—C23−11.1 (3)
C3—C4—C5—C6−179.7 (2)C23—C18—C19—C20−1.1 (3)
C4—C5—C6—C7−0.9 (3)C17—C18—C19—C20175.7 (2)
C5—C6—C7—C81.2 (3)C18—C19—C20—C21−0.3 (3)
C5—C6—C7—Cl1−178.96 (18)C18—C19—C20—Cl3−179.20 (17)
C6—C7—C8—C9−0.3 (3)C19—C20—C21—C221.2 (4)
Cl1—C7—C8—C9179.89 (17)Cl3—C20—C21—C22−179.88 (19)
C1—N1—C9—C8176.9 (2)C20—C21—C22—C23−0.7 (4)
C1—N1—C9—C4−3.2 (3)C21—C22—C23—C18−0.7 (4)
C7—C8—C9—N1179.0 (2)C19—C18—C23—C221.7 (4)
C7—C8—C9—C4−1.0 (3)C17—C18—C23—C22−175.2 (2)
C5—C4—C9—N1−178.7 (2)C2—C3—N2—N3−1.5 (3)
C3—C4—C9—N10.8 (3)C4—C3—N2—N3177.33 (19)
C5—C4—C9—C81.3 (3)N3—C10—C11—C124.1 (4)
C3—C4—C9—C8−179.3 (2)N3—C10—C11—C16−175.2 (2)
N2—N3—C10—C11178.2 (2)C19—C18—C17—O1−10.0 (3)
N3—C10—C11—C16−175.2 (2)C19—C18—C17—O2172.1 (2)
N3—C10—C11—C124.1 (4)C23—C18—C17—O1166.8 (2)
C16—C11—C12—C13−0.1 (4)C23—C18—C17—O2−11.1 (3)
C10—C11—C12—C13−179.4 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1n···O2i0.89 (3)1.76 (3)2.641 (3)175 (3)
N2—H2n···O1ii0.882.002.809 (3)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1n⋯O2i 0.89 (3)1.76 (3)2.641 (3)175 (3)
N2—H2n⋯O1ii 0.882.002.809 (3)152

Symmetry codes: (i) ; (ii) .

  14 in total

Review 1.  Medical need, scientific opportunity and the drive for antimalarial drugs.

Authors:  Robert G Ridley
Journal:  Nature       Date:  2002-02-07       Impact factor: 49.962

Review 2.  New fluoroquinolones: a class of potent antibiotics.

Authors:  Marcus Vinícius Nora De Souza
Journal:  Mini Rev Med Chem       Date:  2005-11       Impact factor: 3.862

3.  Design and synthesis of substituted quinolines as novel and selective melanin concentrating hormone antagonists as anti-obesity agents.

Authors:  Namal C Warshakoon; Justin Sheville; Ritu Tiku Bhatt; Wei Ji; Jose L Mendez-Andino; Kenneth M Meyers; Nick Kim; John A Wos; Chrissy Mitchell; Jennifer L Paris; Beth B Pinney; Ofer Reizes; X Eric Hu
Journal:  Bioorg Med Chem Lett       Date:  2006-07-25       Impact factor: 2.823

4.  Structure-activity relationships in quinoline Reissert derivatives with HIV-1 reverse transcriptase inhibitory activity.

Authors:  M Font; A Monge; I Ruiz; B Heras
Journal:  Drug Des Discov       Date:  1997-04

5.  Enhanced activity of mefloquine and artesunic acid against Plasmodium falciparum in vitro and P. berghei in mice by combination with ciprofloxacin.

Authors:  Anderson Assunção Andrade; Fernando de Pilla Varotti; Isabela Oliveira de Freitas; Marcus Vinícius Nora de Souza; Thatyana Rocha Alves Vasconcelos; Núbia Boechat; Antoniana Ursine Krettli
Journal:  Eur J Pharmacol       Date:  2006-12-12       Impact factor: 4.432

6.  Quinolone antibacterial agents. Oxolinic acid and related compounds.

Authors:  D Kaminsky; R I Meltzer
Journal:  J Med Chem       Date:  1968-01       Impact factor: 7.446

Review 7.  Antimalarial agents. Chloroquine, hydroxychloroquine, and quinacrine.

Authors:  L Tanenbaum; D L Tuffanelli
Journal:  Arch Dermatol       Date:  1980-05

8.  Antifungal properties of new series of quinoline derivatives.

Authors:  Robert Musiol; Josef Jampilek; Vladimir Buchta; Luis Silva; Halina Niedbala; Barbara Podeszwa; Anna Palka; Katarzyna Majerz-Maniecka; Barbara Oleksyn; Jaroslaw Polanski
Journal:  Bioorg Med Chem       Date:  2006-02-03       Impact factor: 3.641

9.  Direct interaction between a quinoline derivative, MS-209, and multidrug resistance protein (MRP) in human gastric cancer cells.

Authors:  T Nakamura; M Oka; K Aizawa; H Soda; M Fukuda; K Terashi; K Ikeda; Y Mizuta; Y Noguchi; Y Kimura; T Tsuruo; S Kohno
Journal:  Biochem Biophys Res Commun       Date:  1999-02-24       Impact factor: 3.575

10.  Repository drugs. 8. Ester and amide congeners of amodiaquine, hydroxychloroquine, oxychloroquine, primaquine, quinacrine, and related substances as potential long-acting antimalarial agents.

Authors:  E F Elslager; F H Tendick; L M Werbel
Journal:  J Med Chem       Date:  1969-07       Impact factor: 7.446

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