Literature DB >> 21578899

2-Pyridone: monoclinic polymorph.

Hadi D Arman, Pavel Poplaukhin, Edward R T Tiekink.   

Abstract

The asymmetric unit in the title compound, C(5)H(5)NO, comprises two independent but virtually identical mol-ecules of 2-pyridone, and represents a monoclinic polymorph of the previously reported ortho-rhom-bic (P2(1)2(1)2(1)) form [Penfold (1953 ▶). Acta Cryst.6, 591-600; Ohms et al. (1984 ▶). Z. Kristallogr.169, 185-200; Yang & Craven (1998 ▶). Acta Cryst. B54, 912-920]. The independent mol-ecules are linked into supra-molecular dimers via eight-membered {⋯HNC(O)}(2) amide synthons in contrast to the helical supra-molecular chains, mediated by {⋯HNC(O)} links, found in the ortho-rhom-bic form.

Entities:  

Year:  2009        PMID: 21578899      PMCID: PMC2972078          DOI: 10.1107/S1600536809049496

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of the ortho­rhom­bic form of 2-pyridone, see: Penfold (1953 ▶); Ohms et al. (1984 ▶); Yang & Craven (1998 ▶). For related studies of co-crystal formation, see: Broker & Tiekink (2007 ▶); Ellis et al. (2009 ▶). For analysis of the geometric structures, see: Spek (2009 ▶).

Experimental

Crystal data

C5H5NO M = 95.10 Monoclinic, a = 6.2027 (13) Å b = 16.327 (4) Å c = 9.1046 (18) Å β = 92.242 (7)° V = 921.3 (3) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 98 K 0.44 × 0.39 × 0.15 mm

Data collection

Rigaku AFC12K/SATURN724 diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.840, T max = 1 6582 measured reflections 1903 independent reflections 1724 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.117 S = 1.10 1903 reflections 127 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809049496/hg2602sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809049496/hg2602Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H5NOF(000) = 400
Mr = 95.10Dx = 1.371 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71069 Å
Hall symbol: -P 2ynCell parameters from 3046 reflections
a = 6.2027 (13) Åθ = 3.3–40.2°
b = 16.327 (4) ŵ = 0.10 mm1
c = 9.1046 (18) ÅT = 98 K
β = 92.242 (7)°Prism, colourless
V = 921.3 (3) Å30.44 × 0.39 × 0.15 mm
Z = 8
Rigaku AFC12K/SATURN724 diffractometer1903 independent reflections
Radiation source: fine-focus sealed tube1724 reflections with I > 2σ(I)
graphiteRint = 0.037
ω scansθmax = 26.5°, θmin = 2.5°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −7→5
Tmin = 0.840, Tmax = 1k = −20→20
6582 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0583P)2 + 0.275P] where P = (Fo2 + 2Fc2)/3
1903 reflections(Δ/σ)max = 0.001
127 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.27541 (14)0.36020 (6)0.47704 (10)0.0239 (2)
N1−0.07408 (17)0.31779 (7)0.48531 (12)0.0201 (3)
H1N−0.10070.35870.54500.024*
C10.1321 (2)0.30993 (8)0.43716 (14)0.0195 (3)
C2−0.2397 (2)0.26660 (8)0.44686 (15)0.0232 (3)
H2−0.37950.27690.48190.028*
C3−0.2074 (2)0.20065 (8)0.35857 (15)0.0236 (3)
H3−0.32190.16410.33300.028*
C40.0019 (2)0.18832 (8)0.30615 (14)0.0224 (3)
H40.02890.14260.24500.027*
C50.1649 (2)0.24113 (8)0.34226 (14)0.0209 (3)
H50.30330.23240.30390.025*
O2−0.14759 (15)0.44304 (6)0.67815 (11)0.0263 (3)
N20.19925 (17)0.48837 (7)0.67120 (12)0.0204 (3)
H2N0.22380.45190.60270.024*
C6−0.0049 (2)0.49182 (8)0.72495 (14)0.0199 (3)
C7−0.0344 (2)0.55309 (8)0.83511 (15)0.0236 (3)
H7−0.17170.55920.87650.028*
C80.1311 (2)0.60263 (9)0.88132 (16)0.0267 (3)
H80.10780.64270.95470.032*
C90.3370 (2)0.59536 (9)0.82168 (17)0.0276 (3)
H90.45260.62990.85390.033*
C100.3652 (2)0.53746 (9)0.71679 (15)0.0243 (3)
H100.50220.53130.67510.029*
U11U22U33U12U13U23
O10.0186 (5)0.0256 (5)0.0277 (5)−0.0021 (4)0.0025 (4)−0.0048 (4)
N10.0186 (6)0.0198 (5)0.0219 (5)0.0010 (4)0.0027 (4)−0.0035 (4)
C10.0180 (6)0.0210 (6)0.0195 (6)0.0012 (5)0.0000 (5)0.0018 (5)
C20.0178 (6)0.0248 (7)0.0272 (7)−0.0013 (5)0.0026 (5)−0.0022 (5)
C30.0208 (7)0.0220 (7)0.0281 (7)−0.0021 (5)0.0013 (5)−0.0036 (5)
C40.0244 (7)0.0202 (6)0.0227 (6)0.0036 (5)−0.0004 (5)−0.0025 (5)
C50.0179 (6)0.0239 (7)0.0211 (6)0.0031 (5)0.0031 (5)−0.0010 (5)
O20.0206 (5)0.0245 (5)0.0342 (5)−0.0041 (4)0.0062 (4)−0.0078 (4)
N20.0209 (6)0.0183 (5)0.0221 (5)−0.0003 (4)0.0029 (4)−0.0014 (4)
C60.0191 (6)0.0183 (6)0.0222 (6)0.0011 (5)0.0009 (5)0.0029 (5)
C70.0212 (6)0.0252 (7)0.0245 (7)0.0031 (5)0.0025 (5)−0.0007 (5)
C80.0268 (7)0.0262 (7)0.0270 (7)0.0035 (5)−0.0010 (6)−0.0063 (5)
C90.0227 (7)0.0256 (7)0.0342 (8)−0.0026 (5)−0.0024 (6)−0.0043 (6)
C100.0176 (6)0.0251 (7)0.0304 (7)−0.0016 (5)0.0015 (5)0.0016 (6)
O1—C11.2529 (16)O2—C61.2530 (16)
N1—C21.3597 (17)N2—C101.3567 (17)
N1—C11.3743 (17)N2—C61.3762 (17)
N1—H1N0.8800N2—H2N0.8800
C1—C51.4365 (18)C6—C71.4335 (18)
C2—C31.3633 (19)C7—C81.3607 (19)
C2—H20.9500C7—H70.9500
C3—C41.4151 (18)C8—C91.412 (2)
C3—H30.9500C8—H80.9500
C4—C51.3590 (19)C9—C101.360 (2)
C4—H40.9500C9—H90.9500
C5—H50.9500C10—H100.9500
C2—N1—C1124.33 (11)C10—N2—C6124.37 (11)
C2—N1—H1N117.8C10—N2—H2N117.8
C1—N1—H1N117.8C6—N2—H2N117.8
O1—C1—N1120.32 (11)O2—C6—N2120.04 (12)
O1—C1—C5124.83 (12)O2—C6—C7124.99 (12)
N1—C1—C5114.84 (11)N2—C6—C7114.96 (11)
N1—C2—C3120.67 (12)C8—C7—C6121.03 (12)
N1—C2—H2119.7C8—C7—H7119.5
C3—C2—H2119.7C6—C7—H7119.5
C2—C3—C4118.00 (12)C7—C8—C9120.93 (13)
C2—C3—H3121.0C7—C8—H8119.5
C4—C3—H3121.0C9—C8—H8119.5
C5—C4—C3120.77 (12)C10—C9—C8118.12 (13)
C5—C4—H4119.6C10—C9—H9120.9
C3—C4—H4119.6C8—C9—H9120.9
C4—C5—C1121.36 (12)N2—C10—C9120.59 (12)
C4—C5—H5119.3N2—C10—H10119.7
C1—C5—H5119.3C9—C10—H10119.7
C2—N1—C1—O1179.47 (12)C10—N2—C6—O2−178.77 (12)
C2—N1—C1—C5−1.04 (18)C10—N2—C6—C70.61 (18)
C1—N1—C2—C32.1 (2)O2—C6—C7—C8178.83 (13)
N1—C2—C3—C4−1.3 (2)N2—C6—C7—C8−0.51 (19)
C2—C3—C4—C5−0.4 (2)C6—C7—C8—C90.2 (2)
C3—C4—C5—C11.5 (2)C7—C8—C9—C100.0 (2)
O1—C1—C5—C4178.72 (12)C6—N2—C10—C9−0.4 (2)
N1—C1—C5—C4−0.74 (18)C8—C9—C10—N20.1 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1n···O20.881.862.7450 (16)177
N2—H2n···O10.881.922.7915 (16)171
C2—H2···O1i0.952.533.3943 (18)150
C4—H4···O2ii0.952.543.2989 (18)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1n⋯O20.881.862.7450 (16)177
N2—H2n⋯O10.881.922.7915 (16)171
C2—H2⋯O1i 0.952.533.3943 (18)150
C4—H4⋯O2ii 0.952.543.2989 (18)137

Symmetry codes: (i) ; (ii) .

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3.  Structure validation in chemical crystallography.

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