Literature DB >> 21578893

Ethyl 4-hydr-oxy-2,6-diphenyl-1-(2-thio-morpholinopropano-yl)-1,2,5,6-tetra-hydro-pyridine-3-carboxyl-ate.

G Aridoss, D Gayathri, Keun Soo Park, Jong Tae Kim, Yeon Tae Jeong.   

Abstract

In the title compound, C(27)H(32)N(2)O(4)S, the thio-morpholine ring adopts a chair conformation and the tetra-hydro-pyridine ring is in a distorted envelope conformation. The mol-ecular structure is stabilized by an intra-molecular O-H⋯O inter-action and the crystal packing is stabilized by an inter-molecular C-H⋯O inter-action, generating an S(6) motif and a dimer of the type R(2) (2)(18), respectively.

Entities:  

Year:  2009        PMID: 21578893      PMCID: PMC2971869          DOI: 10.1107/S1600536809049186

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and biological activity of 2,6-diaryl­piperidin-4-one derivatives, see: Aridoss, Balasubramanian, Parthiban, Ramachandran & Kabilan (2007 ▶); Aridoss, Balasubramanian, Parthiban & Kabilan (2007 ▶); Aridoss, Parthiban et al. (2009 ▶). For a related structure, see: Aridoss, Gayathri et al. (2009 ▶). For ring conformational analysis, see: Cremer & Pople (1975 ▶); Nardelli (1983 ▶).

Experimental

Crystal data

C27H32N2O4S M = 480.61 Triclinic, a = 9.904 (3) Å b = 11.400 (4) Å c = 12.103 (4) Å α = 93.908 (18)° β = 104.941 (15)° γ = 106.819 (16)° V = 1248.7 (7) Å3 Z = 2 Mo Kα radiation μ = 0.17 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (; Bruker, 1999 ▶) T min = 0.952, T max = 0.968 26182 measured reflections 5707 independent reflections 4543 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.117 S = 1.01 5707 reflections 309 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809049186/is2490sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809049186/is2490Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H32N2O4SZ = 2
Mr = 480.61F(000) = 512
Triclinic, P1Dx = 1.278 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.904 (3) ÅCell parameters from 5338 reflections
b = 11.400 (4) Åθ = 2.3–27.8°
c = 12.103 (4) ŵ = 0.17 mm1
α = 93.908 (18)°T = 293 K
β = 104.941 (15)°Block, colorless
γ = 106.819 (16)°0.30 × 0.25 × 0.20 mm
V = 1248.7 (7) Å3
Bruker Kappa APEXII CCD diffractometer5707 independent reflections
Radiation source: fine-focus sealed tube4543 reflections with I > 2σ(I)
graphiteRint = 0.032
ω and φ scanθmax = 27.8°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 1999)h = −12→12
Tmin = 0.952, Tmax = 0.968k = −14→14
26182 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0614P)2 + 0.2715P] where P = (Fo2 + 2Fc2)/3
5707 reflections(Δ/σ)max = 0.001
309 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.19148 (14)0.27730 (12)0.23357 (11)0.0347 (3)
H11.28190.28830.29590.042*
C21.22176 (15)0.24683 (13)0.12043 (12)0.0400 (3)
H2A1.28170.32180.10130.048*
H2B1.27690.18850.12930.048*
C31.08292 (15)0.19255 (12)0.02448 (11)0.0371 (3)
C40.95026 (14)0.14479 (11)0.04268 (10)0.0331 (3)
C50.93213 (13)0.13505 (11)0.16238 (10)0.0310 (3)
H50.88280.04720.16260.037*
C61.10345 (14)0.08311 (12)0.31764 (10)0.0337 (3)
C71.25989 (15)0.11016 (13)0.39709 (11)0.0357 (3)
H71.32740.13580.35010.043*
C81.45086 (15)0.27218 (15)0.54032 (13)0.0478 (4)
H8A1.49940.28710.48010.057*
H8B1.48890.21540.58530.057*
C91.4863 (2)0.39292 (17)0.61776 (16)0.0611 (4)
H9A1.44500.44850.57330.073*
H9B1.59240.43150.64540.073*
C101.2279 (2)0.29267 (17)0.65584 (14)0.0574 (4)
H10A1.16970.26550.70820.069*
H10B1.18860.34990.61260.069*
C111.21338 (17)0.18191 (15)0.57289 (12)0.0457 (3)
H11A1.25080.12390.61630.055*
H11B1.10990.14050.53290.055*
C121.15095 (14)0.39523 (12)0.24545 (11)0.0358 (3)
C131.12638 (16)0.43177 (14)0.34780 (13)0.0448 (3)
H131.12910.38140.40510.054*
C141.0980 (2)0.54136 (16)0.36610 (16)0.0577 (4)
H141.08090.56430.43520.069*
C151.0948 (2)0.61727 (16)0.28258 (18)0.0640 (5)
H151.07730.69220.29550.077*
C161.1173 (2)0.58217 (16)0.18069 (17)0.0608 (4)
H161.11350.63270.12350.073*
C171.14591 (18)0.47184 (13)0.16176 (13)0.0471 (3)
H171.16180.44900.09210.057*
C180.83851 (13)0.20571 (12)0.19968 (11)0.0332 (3)
C190.80193 (16)0.18358 (14)0.30119 (12)0.0425 (3)
H190.83390.12620.34290.051*
C200.71920 (19)0.24515 (16)0.34109 (15)0.0547 (4)
H200.69550.22940.40930.066*
C210.6719 (2)0.32964 (16)0.28039 (16)0.0597 (4)
H210.61650.37200.30750.072*
C220.7062 (2)0.35187 (16)0.17939 (16)0.0555 (4)
H220.67330.40900.13790.067*
C230.78906 (16)0.29013 (13)0.13889 (12)0.0423 (3)
H230.81160.30570.07020.051*
C241.2782 (2)−0.00907 (15)0.43919 (14)0.0524 (4)
H24A1.37190.00960.49650.079*
H24B1.2733−0.06610.37510.079*
H24C1.2008−0.04570.47250.079*
C250.82265 (15)0.08996 (12)−0.05693 (11)0.0369 (3)
C260.56361 (17)−0.00482 (15)−0.12584 (13)0.0494 (4)
H26A0.4891−0.0668−0.10380.059*
H26B0.5820−0.0430−0.19220.059*
C270.5094 (2)0.1005 (2)−0.15733 (19)0.0757 (6)
H27A0.49670.1411−0.09040.114*
H27B0.41670.0701−0.21670.114*
H27C0.57970.1585−0.18520.114*
N11.07728 (11)0.16791 (10)0.24818 (9)0.0326 (2)
N21.29325 (11)0.21563 (10)0.48737 (9)0.0336 (2)
O11.00568 (11)−0.01107 (9)0.31843 (9)0.0454 (2)
O21.10662 (12)0.19398 (11)−0.07897 (9)0.0520 (3)
H21.02830.1614−0.12960.078*
O30.82742 (12)0.08937 (11)−0.15678 (8)0.0539 (3)
O40.69839 (10)0.03850 (9)−0.03050 (8)0.0406 (2)
S11.41530 (6)0.37181 (4)0.73873 (4)0.06261 (15)
U11U22U33U12U13U23
C10.0296 (6)0.0326 (6)0.0350 (6)0.0045 (5)0.0035 (5)0.0060 (5)
C20.0337 (7)0.0390 (7)0.0460 (8)0.0076 (5)0.0137 (6)0.0064 (6)
C30.0431 (7)0.0354 (7)0.0351 (7)0.0139 (6)0.0140 (6)0.0047 (5)
C40.0358 (6)0.0322 (6)0.0299 (6)0.0116 (5)0.0070 (5)0.0025 (5)
C50.0288 (6)0.0298 (6)0.0289 (6)0.0052 (5)0.0041 (5)0.0032 (5)
C60.0370 (7)0.0346 (7)0.0286 (6)0.0105 (5)0.0090 (5)0.0055 (5)
C70.0362 (7)0.0409 (7)0.0306 (6)0.0146 (5)0.0078 (5)0.0069 (5)
C80.0320 (7)0.0619 (10)0.0434 (8)0.0100 (7)0.0079 (6)0.0019 (7)
C90.0495 (9)0.0547 (10)0.0591 (10)−0.0010 (8)0.0049 (8)−0.0027 (8)
C100.0655 (11)0.0708 (11)0.0464 (9)0.0303 (9)0.0250 (8)0.0069 (8)
C110.0438 (8)0.0530 (9)0.0390 (7)0.0094 (7)0.0169 (6)0.0063 (6)
C120.0307 (6)0.0302 (6)0.0368 (7)0.0014 (5)0.0032 (5)0.0031 (5)
C130.0459 (8)0.0404 (7)0.0407 (7)0.0057 (6)0.0097 (6)0.0036 (6)
C140.0615 (10)0.0485 (9)0.0599 (10)0.0124 (8)0.0215 (8)−0.0046 (8)
C150.0691 (12)0.0387 (9)0.0863 (13)0.0184 (8)0.0259 (10)0.0066 (8)
C160.0725 (11)0.0420 (9)0.0709 (11)0.0196 (8)0.0213 (9)0.0216 (8)
C170.0546 (9)0.0389 (8)0.0446 (8)0.0112 (7)0.0125 (7)0.0101 (6)
C180.0293 (6)0.0327 (6)0.0313 (6)0.0049 (5)0.0051 (5)0.0003 (5)
C190.0429 (7)0.0467 (8)0.0379 (7)0.0131 (6)0.0130 (6)0.0062 (6)
C200.0576 (10)0.0613 (10)0.0484 (9)0.0173 (8)0.0248 (8)0.0013 (7)
C210.0619 (10)0.0562 (10)0.0693 (11)0.0254 (8)0.0285 (9)−0.0019 (8)
C220.0611 (10)0.0474 (9)0.0641 (10)0.0279 (8)0.0167 (8)0.0086 (8)
C230.0455 (8)0.0413 (7)0.0403 (7)0.0150 (6)0.0117 (6)0.0060 (6)
C240.0642 (10)0.0485 (9)0.0429 (8)0.0280 (8)0.0018 (7)0.0064 (7)
C250.0422 (7)0.0358 (7)0.0311 (6)0.0146 (6)0.0065 (5)0.0017 (5)
C260.0395 (8)0.0513 (9)0.0411 (8)0.0069 (6)−0.0052 (6)−0.0004 (6)
C270.0595 (11)0.0746 (13)0.0794 (13)0.0234 (10)−0.0081 (10)0.0230 (11)
N10.0296 (5)0.0308 (5)0.0314 (5)0.0059 (4)0.0030 (4)0.0054 (4)
N20.0291 (5)0.0398 (6)0.0302 (5)0.0091 (4)0.0077 (4)0.0055 (4)
O10.0431 (5)0.0415 (5)0.0446 (5)0.0043 (4)0.0088 (4)0.0161 (4)
O20.0516 (6)0.0649 (7)0.0388 (5)0.0120 (5)0.0204 (5)0.0043 (5)
O30.0537 (6)0.0723 (8)0.0297 (5)0.0162 (6)0.0084 (4)0.0000 (5)
O40.0352 (5)0.0447 (5)0.0327 (5)0.0077 (4)0.0010 (4)0.0018 (4)
S10.0835 (3)0.0571 (3)0.0407 (2)0.0286 (2)0.0031 (2)−0.00484 (18)
C1—N11.4773 (16)C12—C131.382 (2)
C1—C21.5142 (19)C13—C141.373 (2)
C1—C121.5182 (19)C13—H130.9300
C1—H10.9800C14—C151.375 (3)
C2—C31.4861 (19)C14—H140.9300
C2—H2A0.9700C15—C161.363 (3)
C2—H2B0.9700C15—H150.9300
C3—O21.3323 (16)C16—C171.384 (2)
C3—C41.3501 (19)C16—H160.9300
C4—C251.4477 (18)C17—H170.9300
C4—C51.5126 (17)C18—C231.375 (2)
C5—N11.4665 (16)C18—C191.3867 (19)
C5—C181.5202 (18)C19—C201.374 (2)
C5—H50.9800C19—H190.9300
C6—O11.2227 (16)C20—C211.367 (3)
C6—N11.3609 (17)C20—H200.9300
C6—C71.5281 (18)C21—C221.371 (2)
C7—N21.4675 (18)C21—H210.9300
C7—C241.526 (2)C22—C231.380 (2)
C7—H70.9800C22—H220.9300
C8—N21.4520 (18)C23—H230.9300
C8—C91.507 (2)C24—H24A0.9600
C8—H8A0.9700C24—H24B0.9600
C8—H8B0.9700C24—H24C0.9600
C9—S11.782 (2)C25—O31.2212 (17)
C9—H9A0.9700C25—O41.3310 (17)
C9—H9B0.9700C26—O41.4505 (16)
C10—C111.507 (2)C26—C271.485 (3)
C10—S11.792 (2)C26—H26A0.9700
C10—H10A0.9700C26—H26B0.9700
C10—H10B0.9700C27—H27A0.9600
C11—N21.4647 (17)C27—H27B0.9600
C11—H11A0.9700C27—H27C0.9600
C11—H11B0.9700O2—H20.8200
C12—C171.382 (2)
N1—C1—C2107.66 (11)C12—C13—H13119.5
N1—C1—C12112.16 (11)C13—C14—C15120.20 (16)
C2—C1—C12114.82 (11)C13—C14—H14119.9
N1—C1—H1107.3C15—C14—H14119.9
C2—C1—H1107.3C16—C15—C14119.63 (16)
C12—C1—H1107.3C16—C15—H15120.2
C3—C2—C1111.58 (11)C14—C15—H15120.2
C3—C2—H2A109.3C15—C16—C17120.40 (16)
C1—C2—H2A109.3C15—C16—H16119.8
C3—C2—H2B109.3C17—C16—H16119.8
C1—C2—H2B109.3C12—C17—C16120.56 (15)
H2A—C2—H2B108.0C12—C17—H17119.7
O2—C3—C4125.09 (13)C16—C17—H17119.7
O2—C3—C2112.09 (12)C23—C18—C19118.54 (13)
C4—C3—C2122.79 (12)C23—C18—C5123.75 (12)
C3—C4—C25118.29 (12)C19—C18—C5117.71 (12)
C3—C4—C5122.64 (11)C20—C19—C18120.98 (14)
C25—C4—C5118.79 (11)C20—C19—H19119.5
N1—C5—C4109.82 (10)C18—C19—H19119.5
N1—C5—C18110.60 (10)C21—C20—C19119.88 (15)
C4—C5—C18116.73 (10)C21—C20—H20120.1
N1—C5—H5106.3C19—C20—H20120.1
C4—C5—H5106.3C20—C21—C22119.83 (15)
C18—C5—H5106.3C20—C21—H21120.1
O1—C6—N1121.77 (12)C22—C21—H21120.1
O1—C6—C7120.49 (12)C21—C22—C23120.49 (15)
N1—C6—C7117.73 (11)C21—C22—H22119.8
N2—C7—C24116.11 (11)C23—C22—H22119.8
N2—C7—C6109.40 (10)C18—C23—C22120.26 (14)
C24—C7—C6109.39 (12)C18—C23—H23119.9
N2—C7—H7107.2C22—C23—H23119.9
C24—C7—H7107.2C7—C24—H24A109.5
C6—C7—H7107.2C7—C24—H24B109.5
N2—C8—C9111.80 (13)H24A—C24—H24B109.5
N2—C8—H8A109.3C7—C24—H24C109.5
C9—C8—H8A109.3H24A—C24—H24C109.5
N2—C8—H8B109.3H24B—C24—H24C109.5
C9—C8—H8B109.3O3—C25—O4122.39 (12)
H8A—C8—H8B107.9O3—C25—C4123.53 (13)
C8—C9—S1112.18 (12)O4—C25—C4114.08 (11)
C8—C9—H9A109.2O4—C26—C27110.13 (13)
S1—C9—H9A109.2O4—C26—H26A109.6
C8—C9—H9B109.2C27—C26—H26A109.6
S1—C9—H9B109.2O4—C26—H26B109.6
H9A—C9—H9B107.9C27—C26—H26B109.6
C11—C10—S1112.47 (12)H26A—C26—H26B108.1
C11—C10—H10A109.1C26—C27—H27A109.5
S1—C10—H10A109.1C26—C27—H27B109.5
C11—C10—H10B109.1H27A—C27—H27B109.5
S1—C10—H10B109.1C26—C27—H27C109.5
H10A—C10—H10B107.8H27A—C27—H27C109.5
N2—C11—C10112.61 (13)H27B—C27—H27C109.5
N2—C11—H11A109.1C6—N1—C5117.56 (10)
C10—C11—H11A109.1C6—N1—C1125.05 (11)
N2—C11—H11B109.1C5—N1—C1115.92 (10)
C10—C11—H11B109.1C8—N2—C11112.46 (11)
H11A—C11—H11B107.8C8—N2—C7111.81 (11)
C17—C12—C13118.22 (14)C11—N2—C7111.79 (11)
C17—C12—C1123.25 (13)C3—O2—H2109.5
C13—C12—C1118.41 (12)C25—O4—C26116.77 (11)
C14—C13—C12120.97 (15)C9—S1—C1095.98 (8)
C14—C13—H13119.5
N1—C1—C2—C348.04 (14)C18—C19—C20—C210.0 (2)
C12—C1—C2—C3−77.64 (14)C19—C20—C21—C220.5 (3)
C1—C2—C3—O2164.35 (11)C20—C21—C22—C23−0.4 (3)
C1—C2—C3—C4−17.41 (18)C19—C18—C23—C220.6 (2)
O2—C3—C4—C250.3 (2)C5—C18—C23—C22−179.08 (13)
C2—C3—C4—C25−177.71 (12)C21—C22—C23—C18−0.2 (2)
O2—C3—C4—C5174.15 (12)C3—C4—C25—O3−3.3 (2)
C2—C3—C4—C5−3.9 (2)C5—C4—C25—O3−177.40 (13)
C3—C4—C5—N1−7.76 (17)C3—C4—C25—O4176.05 (12)
C25—C4—C5—N1166.06 (11)C5—C4—C25—O41.95 (17)
C3—C4—C5—C18119.13 (14)O1—C6—N1—C5−8.07 (18)
C25—C4—C5—C18−67.04 (15)C7—C6—N1—C5172.90 (10)
O1—C6—C7—N2−110.36 (14)O1—C6—N1—C1−173.66 (12)
N1—C6—C7—N268.68 (14)C7—C6—N1—C17.31 (18)
O1—C6—C7—C2417.86 (18)C4—C5—N1—C6−123.91 (12)
N1—C6—C7—C24−163.10 (12)C18—C5—N1—C6105.82 (13)
N2—C8—C9—S164.32 (17)C4—C5—N1—C142.99 (14)
S1—C10—C11—N2−61.25 (16)C18—C5—N1—C1−87.27 (13)
N1—C1—C12—C17−125.18 (14)C2—C1—N1—C6101.21 (14)
C2—C1—C12—C17−1.86 (18)C12—C1—N1—C6−131.53 (13)
N1—C1—C12—C1358.79 (15)C2—C1—N1—C5−64.58 (14)
C2—C1—C12—C13−177.89 (12)C12—C1—N1—C562.67 (14)
C17—C12—C13—C14−0.1 (2)C9—C8—N2—C11−63.15 (17)
C1—C12—C13—C14176.10 (14)C9—C8—N2—C7170.12 (13)
C12—C13—C14—C15−0.5 (3)C10—C11—N2—C861.90 (17)
C13—C14—C15—C161.1 (3)C10—C11—N2—C7−171.36 (12)
C14—C15—C16—C17−1.1 (3)C24—C7—N2—C875.03 (16)
C13—C12—C17—C160.2 (2)C6—C7—N2—C8−160.59 (11)
C1—C12—C17—C16−175.88 (14)C24—C7—N2—C11−52.06 (16)
C15—C16—C17—C120.5 (3)C6—C7—N2—C1172.31 (14)
N1—C5—C18—C23116.73 (13)O3—C25—O4—C26−7.80 (19)
C4—C5—C18—C23−9.78 (18)C4—C25—O4—C26172.84 (11)
N1—C5—C18—C19−62.99 (15)C27—C26—O4—C25−81.20 (18)
C4—C5—C18—C19170.50 (11)C8—C9—S1—C10−55.24 (14)
C23—C18—C19—C20−0.6 (2)C11—C10—S1—C953.83 (14)
C5—C18—C19—C20179.18 (13)
D—H···AD—HH···AD···AD—H···A
O2—H2···O30.821.852.560 (2)144
C24—H24B···O3i0.962.543.285 (2)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2⋯O30.821.852.560 (2)144
C24—H24B⋯O3i 0.962.543.285 (2)135

Symmetry code: (i) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  G Aridoss; S Balasubramanian; P Parthiban; S Kabilan
Journal:  Eur J Med Chem       Date:  2007-01-05       Impact factor: 6.514

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Journal:  Eur J Med Chem       Date:  2008-04-07       Impact factor: 6.514

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Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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Authors:  G Aridoss; S Sundaramoorthy; D Velmurugan; K S Park; Y T Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-10

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-14
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