Literature DB >> 21578891

Phenazine-naphthalene-1,5-diamine-water (1/1/2).

Agnieszka Czapik1, Maria Gdaniec.   

Abstract

The asymmetric unit of the title compound, C(12)H(8)N(2C(10)H(10)N(2)·2H(2)O, contains one half-mol-ecule of phenazine, one half-mol-ecule of naphthalene-1,5-diamine and one water mol-ecule. The phenazine and naphthalene-1,5-diamine mol-ecules are located on inversion centers. The water mol-ecules serve as bridges between the naphthalene-1,5-diamine mol-ecules and also between the naphthalene-1,5-diamine and phenazine mol-ecules. The naphthalene-1,5-diamine and water mol-ecules are connected via N-H⋯O and O-H⋯N hydrogen bonds, forming a T4(2) motif. They are arranged into a two-dimensional polymeric structure parallel to (10) in which the water mol-ecule is a single donor and a double acceptor, whereas the amino group is a double donor and a single acceptor in the hydrogen bonding. These two-dimensional assemblies alternate with the layers of phenazine mol-ecules arranged into a herringbone motif. Each phenazine mol-ecule is hydrogen bonded to two water mol-ecules and thus a three-dimensional framework of hydrogen-bonded mol-ecules is generated.

Entities:  

Year:  2009        PMID: 21578891      PMCID: PMC2972038          DOI: 10.1107/S1600536809049009

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of co-crystals of aromatic diaza­heterocycles with small aromatic mol­ecules, see: Thalladi et al. (2000 ▶); Kadzewski & Gdaniec (2006 ▶); Czapik & Gdaniec (2008 ▶). For structures with similar T4(2) hydrogen-bond motifs, see: Anthony et al. (2007 ▶); Neely et al. (2007 ▶). For symbols of hydrogen-bond motifs, see: Infantes et al. (2003 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C12H8N2·C10H10N2·2H2O M = 374.44 Monoclinic, a = 13.0395 (10) Å b = 4.9266 (2) Å c = 15.7211 (12) Å β = 112.508 (9)° V = 933.00 (11) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 130 K 0.25 × 0.25 × 0.25 mm

Data collection

Kuma KM-4-CCD κ-geometry diffractometer Absorption correction: none 5251 measured reflections 1643 independent reflections 1357 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.140 S = 1.08 1643 reflections 143 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809049009/rz2392sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809049009/rz2392Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H8N2·C10H10N2·2H2OF(000) = 396
Mr = 374.44Dx = 1.333 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3369 reflections
a = 13.0395 (10) Åθ = 2.6–27.9°
b = 4.9266 (2) ŵ = 0.09 mm1
c = 15.7211 (12) ÅT = 130 K
β = 112.508 (9)°Cube, red
V = 933.00 (11) Å30.25 × 0.25 × 0.25 mm
Z = 2
Kuma KM-4-CCD κ-geometry diffractometer1357 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.022
graphiteθmax = 25.0°, θmin = 4.4°
ω scansh = −15→15
5251 measured reflectionsk = −5→5
1643 independent reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0606P)2 + 1.1003P] where P = (Fo2 + 2Fc2)/3
1643 reflections(Δ/σ)max < 0.001
143 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1A0.12558 (17)0.2658 (5)0.18906 (13)0.0249 (5)
H1N0.116 (3)0.419 (8)0.218 (2)0.054 (10)*
H2N0.198 (3)0.258 (6)0.1847 (19)0.038 (8)*
C1A0.03659 (18)0.2272 (5)0.10357 (15)0.0220 (5)
C2A−0.05954 (19)0.3753 (5)0.08078 (15)0.0245 (5)
H2A−0.06550.50560.12140.029*
C3A−0.14918 (19)0.3314 (5)−0.00367 (16)0.0248 (5)
H3A−0.21350.4343−0.01850.030*
C4A0.14256 (19)−0.1391 (5)0.06406 (16)0.0243 (5)
H4A0.2021−0.11340.11970.029*
C5A0.04549 (18)0.0218 (5)0.04242 (15)0.0223 (5)
N1B0.05503 (15)0.9466 (4)0.43964 (12)0.0220 (5)
C2B0.08133 (18)0.8115 (5)0.51930 (15)0.0211 (5)
C3B0.16597 (18)0.6111 (5)0.54398 (16)0.0252 (5)
H3B0.20310.57530.50510.030*
C4B0.19301 (19)0.4712 (5)0.62413 (17)0.0279 (6)
H4B0.24890.34110.63990.033*
C5B−0.02539 (18)1.1344 (5)0.41932 (15)0.0217 (5)
C6B−0.0560 (2)1.2869 (5)0.33626 (15)0.0258 (6)
H6B−0.02061.25530.29590.031*
C7B−0.1367 (2)1.4781 (5)0.31585 (16)0.0290 (6)
H7B−0.15551.57780.26170.035*
O1W0.12857 (15)0.7813 (4)0.29145 (12)0.0297 (5)
H1W0.137 (3)0.932 (10)0.269 (3)0.074 (13)*
H2W0.107 (2)0.819 (6)0.337 (2)0.035 (8)*
U11U22U33U12U13U23
N1A0.0267 (11)0.0260 (12)0.0211 (10)−0.0033 (9)0.0081 (8)−0.0025 (9)
C1A0.0246 (12)0.0221 (12)0.0212 (11)−0.0043 (10)0.0108 (9)0.0018 (9)
C2A0.0294 (12)0.0227 (12)0.0247 (12)−0.0004 (10)0.0138 (10)0.0008 (10)
C3A0.0222 (11)0.0244 (13)0.0292 (12)0.0022 (10)0.0114 (10)0.0043 (10)
C4A0.0223 (11)0.0243 (13)0.0261 (12)−0.0029 (10)0.0089 (9)0.0011 (10)
C5A0.0261 (11)0.0201 (12)0.0240 (11)−0.0036 (9)0.0132 (10)0.0020 (9)
N1B0.0252 (10)0.0201 (10)0.0230 (10)−0.0026 (8)0.0119 (8)−0.0032 (8)
C2B0.0226 (11)0.0181 (12)0.0247 (11)−0.0044 (9)0.0114 (9)−0.0038 (9)
C3B0.0245 (12)0.0240 (12)0.0302 (12)−0.0001 (10)0.0139 (10)−0.0017 (10)
C4B0.0250 (12)0.0216 (13)0.0346 (13)0.0027 (10)0.0085 (10)−0.0008 (10)
C5B0.0228 (11)0.0196 (12)0.0246 (12)−0.0039 (9)0.0111 (9)−0.0040 (9)
C6B0.0312 (12)0.0262 (13)0.0220 (12)−0.0006 (11)0.0124 (10)−0.0005 (10)
C7B0.0355 (13)0.0237 (13)0.0257 (12)−0.0014 (11)0.0094 (10)0.0021 (10)
O1W0.0405 (10)0.0279 (11)0.0257 (9)0.0042 (8)0.0182 (8)−0.0001 (8)
N1A—C1A1.412 (3)N1B—C5B1.342 (3)
N1A—H1N0.91 (4)C2B—C3B1.420 (3)
N1A—H2N0.97 (3)C2B—C5Bii1.440 (3)
C1A—C2A1.374 (3)C3B—C4B1.359 (3)
C1A—C5A1.431 (3)C3B—H3B0.9300
C2A—C3A1.410 (3)C4B—C7Bii1.422 (4)
C2A—H2A0.9300C4B—H4B0.9300
C3A—C4Ai1.367 (3)C5B—C6B1.425 (3)
C3A—H3A0.9300C6B—C7B1.356 (3)
C4A—C3Ai1.367 (3)C6B—H6B0.9300
C4A—C5A1.420 (3)C7B—H7B0.9300
C4A—H4A0.9300O1W—H1W0.85 (5)
C5A—C5Ai1.422 (4)O1W—H2W0.89 (3)
N1B—C2B1.341 (3)
C1A—N1A—H1N111 (2)N1B—C2B—C3B119.61 (19)
C1A—N1A—H2N113.2 (16)N1B—C2B—C5Bii121.3 (2)
H1N—N1A—H2N113 (3)C3B—C2B—C5Bii119.1 (2)
C2A—C1A—N1A120.8 (2)C4B—C3B—C2B120.3 (2)
C2A—C1A—C5A120.1 (2)C4B—C3B—H3B119.8
N1A—C1A—C5A119.1 (2)C2B—C3B—H3B119.8
C1A—C2A—C3A120.6 (2)C3B—C4B—C7Bii120.7 (2)
C1A—C2A—H2A119.7C3B—C4B—H4B119.7
C3A—C2A—H2A119.7C7Bii—C4B—H4B119.7
C4Ai—C3A—C2A120.7 (2)N1B—C5B—C6B120.1 (2)
C4Ai—C3A—H3A119.7N1B—C5B—C2Bii121.2 (2)
C2A—C3A—H3A119.7C6B—C5B—C2Bii118.7 (2)
C3Ai—C4A—C5A120.5 (2)C7B—C6B—C5B120.2 (2)
C3Ai—C4A—H4A119.7C7B—C6B—H6B119.9
C5A—C4A—H4A119.7C5B—C6B—H6B119.9
C4A—C5A—C5Ai119.2 (3)C6B—C7B—C4Bii121.0 (2)
C4A—C5A—C1A121.9 (2)C6B—C7B—H7B119.5
C5Ai—C5A—C1A118.9 (3)C4Bii—C7B—H7B119.5
C2B—N1B—C5B117.47 (18)H1W—O1W—H2W107 (3)
D—H···AD—HH···AD···AD—H···A
N1A—H1N···O1W0.91 (4)2.10 (4)2.999 (3)169 (3)
N1A—H2N···O1Wiii0.97 (3)2.15 (3)3.102 (3)166 (2)
O1W—H1W···N1Aiv0.85 (5)2.04 (5)2.871 (3)167 (4)
O1W—H2W···N1B0.89 (3)2.07 (3)2.953 (3)174 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1A—H1N⋯O1W 0.91 (4)2.10 (4)2.999 (3)169 (3)
N1A—H2N⋯O1W i 0.97 (3)2.15 (3)3.102 (3)166 (2)
O1W—H1W⋯N1A ii 0.85 (5)2.04 (5)2.871 (3)167 (4)
O1W—H2W⋯N1B 0.89 (3)2.07 (3)2.953 (3)174 (3)

Symmetry codes: (i) ; (ii) .

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3.  Photophysics and X-ray structure of crystalline 2-aminopurine.

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4.  Quinoxaline-3-amino-phenol-water (2/1/2).

Authors:  Agnieszka Czapik; Maria Gdaniec
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