| Literature DB >> 21578891 |
Agnieszka Czapik1, Maria Gdaniec.
Abstract
The asymmetric unit of the title compound, C(12)H(8)N(2)·C(10)H(10)N(2)·2H(2)O, contains one half-mol-ecule of phenazine, one half-mol-ecule of naphthalene-1,5-diamine and one water mol-ecule. The phenazine and naphthalene-1,5-diamine mol-ecules are located on inversion centers. The water mol-ecules serve as bridges between the naphthalene-1,5-diamine mol-ecules and also between the naphthalene-1,5-diamine and phenazine mol-ecules. The naphthalene-1,5-diamine and water mol-ecules are connected via N-H⋯O and O-H⋯N hydrogen bonds, forming a T4(2) motif. They are arranged into a two-dimensional polymeric structure parallel to (10) in which the water mol-ecule is a single donor and a double acceptor, whereas the amino group is a double donor and a single acceptor in the hydrogen bonding. These two-dimensional assemblies alternate with the layers of phenazine mol-ecules arranged into a herringbone motif. Each phenazine mol-ecule is hydrogen bonded to two water mol-ecules and thus a three-dimensional framework of hydrogen-bonded mol-ecules is generated.Entities:
Year: 2009 PMID: 21578891 PMCID: PMC2972038 DOI: 10.1107/S1600536809049009
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H8N2·C10H10N2·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3369 reflections |
| θ = 2.6–27.9° | |
| µ = 0.09 mm−1 | |
| β = 112.508 (9)° | Cube, red |
| 0.25 × 0.25 × 0.25 mm | |
| Kuma KM-4-CCD κ-geometry diffractometer | 1357 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 25.0°, θmin = 4.4° |
| ω scans | |
| 5251 measured reflections | |
| 1643 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1643 reflections | (Δ/σ)max < 0.001 |
| 143 parameters | Δρmax = 0.22 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1A | 0.12558 (17) | 0.2658 (5) | 0.18906 (13) | 0.0249 (5) | |
| H1N | 0.116 (3) | 0.419 (8) | 0.218 (2) | 0.054 (10)* | |
| H2N | 0.198 (3) | 0.258 (6) | 0.1847 (19) | 0.038 (8)* | |
| C1A | 0.03659 (18) | 0.2272 (5) | 0.10357 (15) | 0.0220 (5) | |
| C2A | −0.05954 (19) | 0.3753 (5) | 0.08078 (15) | 0.0245 (5) | |
| H2A | −0.0655 | 0.5056 | 0.1214 | 0.029* | |
| C3A | −0.14918 (19) | 0.3314 (5) | −0.00367 (16) | 0.0248 (5) | |
| H3A | −0.2135 | 0.4343 | −0.0185 | 0.030* | |
| C4A | 0.14256 (19) | −0.1391 (5) | 0.06406 (16) | 0.0243 (5) | |
| H4A | 0.2021 | −0.1134 | 0.1197 | 0.029* | |
| C5A | 0.04549 (18) | 0.0218 (5) | 0.04242 (15) | 0.0223 (5) | |
| N1B | 0.05503 (15) | 0.9466 (4) | 0.43964 (12) | 0.0220 (5) | |
| C2B | 0.08133 (18) | 0.8115 (5) | 0.51930 (15) | 0.0211 (5) | |
| C3B | 0.16597 (18) | 0.6111 (5) | 0.54398 (16) | 0.0252 (5) | |
| H3B | 0.2031 | 0.5753 | 0.5051 | 0.030* | |
| C4B | 0.19301 (19) | 0.4712 (5) | 0.62413 (17) | 0.0279 (6) | |
| H4B | 0.2489 | 0.3411 | 0.6399 | 0.033* | |
| C5B | −0.02539 (18) | 1.1344 (5) | 0.41932 (15) | 0.0217 (5) | |
| C6B | −0.0560 (2) | 1.2869 (5) | 0.33626 (15) | 0.0258 (6) | |
| H6B | −0.0206 | 1.2553 | 0.2959 | 0.031* | |
| C7B | −0.1367 (2) | 1.4781 (5) | 0.31585 (16) | 0.0290 (6) | |
| H7B | −0.1555 | 1.5778 | 0.2617 | 0.035* | |
| O1W | 0.12857 (15) | 0.7813 (4) | 0.29145 (12) | 0.0297 (5) | |
| H1W | 0.137 (3) | 0.932 (10) | 0.269 (3) | 0.074 (13)* | |
| H2W | 0.107 (2) | 0.819 (6) | 0.337 (2) | 0.035 (8)* |
| N1A | 0.0267 (11) | 0.0260 (12) | 0.0211 (10) | −0.0033 (9) | 0.0081 (8) | −0.0025 (9) |
| C1A | 0.0246 (12) | 0.0221 (12) | 0.0212 (11) | −0.0043 (10) | 0.0108 (9) | 0.0018 (9) |
| C2A | 0.0294 (12) | 0.0227 (12) | 0.0247 (12) | −0.0004 (10) | 0.0138 (10) | 0.0008 (10) |
| C3A | 0.0222 (11) | 0.0244 (13) | 0.0292 (12) | 0.0022 (10) | 0.0114 (10) | 0.0043 (10) |
| C4A | 0.0223 (11) | 0.0243 (13) | 0.0261 (12) | −0.0029 (10) | 0.0089 (9) | 0.0011 (10) |
| C5A | 0.0261 (11) | 0.0201 (12) | 0.0240 (11) | −0.0036 (9) | 0.0132 (10) | 0.0020 (9) |
| N1B | 0.0252 (10) | 0.0201 (10) | 0.0230 (10) | −0.0026 (8) | 0.0119 (8) | −0.0032 (8) |
| C2B | 0.0226 (11) | 0.0181 (12) | 0.0247 (11) | −0.0044 (9) | 0.0114 (9) | −0.0038 (9) |
| C3B | 0.0245 (12) | 0.0240 (12) | 0.0302 (12) | −0.0001 (10) | 0.0139 (10) | −0.0017 (10) |
| C4B | 0.0250 (12) | 0.0216 (13) | 0.0346 (13) | 0.0027 (10) | 0.0085 (10) | −0.0008 (10) |
| C5B | 0.0228 (11) | 0.0196 (12) | 0.0246 (12) | −0.0039 (9) | 0.0111 (9) | −0.0040 (9) |
| C6B | 0.0312 (12) | 0.0262 (13) | 0.0220 (12) | −0.0006 (11) | 0.0124 (10) | −0.0005 (10) |
| C7B | 0.0355 (13) | 0.0237 (13) | 0.0257 (12) | −0.0014 (11) | 0.0094 (10) | 0.0021 (10) |
| O1W | 0.0405 (10) | 0.0279 (11) | 0.0257 (9) | 0.0042 (8) | 0.0182 (8) | −0.0001 (8) |
| N1A—C1A | 1.412 (3) | N1B—C5B | 1.342 (3) |
| N1A—H1N | 0.91 (4) | C2B—C3B | 1.420 (3) |
| N1A—H2N | 0.97 (3) | C2B—C5Bii | 1.440 (3) |
| C1A—C2A | 1.374 (3) | C3B—C4B | 1.359 (3) |
| C1A—C5A | 1.431 (3) | C3B—H3B | 0.9300 |
| C2A—C3A | 1.410 (3) | C4B—C7Bii | 1.422 (4) |
| C2A—H2A | 0.9300 | C4B—H4B | 0.9300 |
| C3A—C4Ai | 1.367 (3) | C5B—C6B | 1.425 (3) |
| C3A—H3A | 0.9300 | C6B—C7B | 1.356 (3) |
| C4A—C3Ai | 1.367 (3) | C6B—H6B | 0.9300 |
| C4A—C5A | 1.420 (3) | C7B—H7B | 0.9300 |
| C4A—H4A | 0.9300 | O1W—H1W | 0.85 (5) |
| C5A—C5Ai | 1.422 (4) | O1W—H2W | 0.89 (3) |
| N1B—C2B | 1.341 (3) | ||
| C1A—N1A—H1N | 111 (2) | N1B—C2B—C3B | 119.61 (19) |
| C1A—N1A—H2N | 113.2 (16) | N1B—C2B—C5Bii | 121.3 (2) |
| H1N—N1A—H2N | 113 (3) | C3B—C2B—C5Bii | 119.1 (2) |
| C2A—C1A—N1A | 120.8 (2) | C4B—C3B—C2B | 120.3 (2) |
| C2A—C1A—C5A | 120.1 (2) | C4B—C3B—H3B | 119.8 |
| N1A—C1A—C5A | 119.1 (2) | C2B—C3B—H3B | 119.8 |
| C1A—C2A—C3A | 120.6 (2) | C3B—C4B—C7Bii | 120.7 (2) |
| C1A—C2A—H2A | 119.7 | C3B—C4B—H4B | 119.7 |
| C3A—C2A—H2A | 119.7 | C7Bii—C4B—H4B | 119.7 |
| C4Ai—C3A—C2A | 120.7 (2) | N1B—C5B—C6B | 120.1 (2) |
| C4Ai—C3A—H3A | 119.7 | N1B—C5B—C2Bii | 121.2 (2) |
| C2A—C3A—H3A | 119.7 | C6B—C5B—C2Bii | 118.7 (2) |
| C3Ai—C4A—C5A | 120.5 (2) | C7B—C6B—C5B | 120.2 (2) |
| C3Ai—C4A—H4A | 119.7 | C7B—C6B—H6B | 119.9 |
| C5A—C4A—H4A | 119.7 | C5B—C6B—H6B | 119.9 |
| C4A—C5A—C5Ai | 119.2 (3) | C6B—C7B—C4Bii | 121.0 (2) |
| C4A—C5A—C1A | 121.9 (2) | C6B—C7B—H7B | 119.5 |
| C5Ai—C5A—C1A | 118.9 (3) | C4Bii—C7B—H7B | 119.5 |
| C2B—N1B—C5B | 117.47 (18) | H1W—O1W—H2W | 107 (3) |
| H··· | ||||
| N1A—H1N···O1W | 0.91 (4) | 2.10 (4) | 2.999 (3) | 169 (3) |
| N1A—H2N···O1Wiii | 0.97 (3) | 2.15 (3) | 3.102 (3) | 166 (2) |
| O1W—H1W···N1Aiv | 0.85 (5) | 2.04 (5) | 2.871 (3) | 167 (4) |
| O1W—H2W···N1B | 0.89 (3) | 2.07 (3) | 2.953 (3) | 174 (3) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1 | 0.91 (4) | 2.10 (4) | 2.999 (3) | 169 (3) |
| N1 | 0.97 (3) | 2.15 (3) | 3.102 (3) | 166 (2) |
| O1 | 0.85 (5) | 2.04 (5) | 2.871 (3) | 167 (4) |
| O1 | 0.89 (3) | 2.07 (3) | 2.953 (3) | 174 (3) |
Symmetry codes: (i) ; (ii) .