| Literature DB >> 21578873 |
Wei-Jin Gu1, Yu-Liang Jiang, Bing-Xiang Wang.
Abstract
The title compound, C(22)H(17)N(3)O(4), was prepared through 1,3-dipolar cyclo-addition: the dihedral angle between the benzimidazole and benzene rings is 80.93 (6)°. The crystal structure is stabilized by weak π-π inter-actions between the planar pyrrolobenzimidazole rings (r.m.s. deviation = 0.0293 Å) of neighbouring mol-ecules, forming chains along the c axis. The perpendicular distance is 3.47 (2) Å and the centroid-centroid distances are in the range of 3.590 (3)-3.944 (3) Å.Entities:
Year: 2009 PMID: 21578873 PMCID: PMC2972134 DOI: 10.1107/S1600536809048867
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C22H17N3O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1791 reflections |
| θ = 2.6–25.2° | |
| µ = 0.10 mm−1 | |
| β = 91.973 (3)° | Block, colorless |
| 0.26 × 0.22 × 0.20 mm | |
| Bruker SMART APEX CCD diffractometer | 3615 independent reflections |
| Radiation source: sealed tube | 2699 reflections with |
| graphite | |
| phi and ω scans | θmax = 26.0°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 13898 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3615 reflections | (Δ/σ)max < 0.001 |
| 264 parameters | Δρmax = 0.19 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Experimental. 1 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. Least-squares planes ( |
| Refinement. Refinement of |
| C1 | 1.0019 (2) | 1.00932 (8) | 0.7360 (3) | 0.0272 (4) | |
| C2 | 1.0476 (2) | 1.05587 (9) | 0.6574 (3) | 0.0342 (5) | |
| H2 | 1.1394 | 1.0634 | 0.6481 | 0.041* | |
| C3 | 0.9480 (3) | 1.09034 (10) | 0.5935 (3) | 0.0403 (6) | |
| H3 | 0.9727 | 1.1219 | 0.5367 | 0.048* | |
| C4 | 0.8095 (2) | 1.07867 (9) | 0.6128 (3) | 0.0387 (6) | |
| H4 | 0.7450 | 1.1033 | 0.5710 | 0.046* | |
| C5 | 0.7662 (2) | 1.03148 (10) | 0.6925 (3) | 0.0359 (5) | |
| H5 | 0.6746 | 1.0239 | 0.7042 | 0.043* | |
| C6 | 0.8651 (2) | 0.99690 (9) | 0.7526 (3) | 0.0283 (5) | |
| C7 | 0.9829 (2) | 0.92732 (8) | 0.8653 (3) | 0.0252 (4) | |
| C8 | 1.0572 (2) | 0.88306 (9) | 0.9310 (3) | 0.0283 (5) | |
| C9 | 1.1957 (2) | 0.89723 (9) | 0.9075 (3) | 0.0301 (5) | |
| C10 | 1.2040 (2) | 0.94775 (9) | 0.8330 (3) | 0.0288 (5) | |
| C11 | 1.3184 (2) | 0.97791 (9) | 0.7903 (3) | 0.0333 (5) | |
| C12 | 0.7257 (2) | 0.91558 (10) | 0.8516 (3) | 0.0326 (5) | |
| H12A | 0.6509 | 0.9402 | 0.8692 | 0.039* | |
| H12B | 0.7325 | 0.8913 | 0.9509 | 0.039* | |
| C13 | 0.69949 (19) | 0.88336 (9) | 0.6848 (3) | 0.0292 (5) | |
| C14 | 0.6168 (2) | 0.90361 (10) | 0.5555 (3) | 0.0394 (6) | |
| H14 | 0.5747 | 0.9368 | 0.5706 | 0.047* | |
| C15 | 0.5946 (3) | 0.87514 (11) | 0.4004 (3) | 0.0463 (7) | |
| H15 | 0.5403 | 0.8898 | 0.3108 | 0.056* | |
| C16 | 0.6539 (3) | 0.82453 (12) | 0.3795 (3) | 0.0493 (7) | |
| H16 | 0.6382 | 0.8055 | 0.2761 | 0.059* | |
| C17 | 0.7340 (3) | 0.80288 (12) | 0.5082 (3) | 0.0466 (6) | |
| H17 | 0.7729 | 0.7690 | 0.4944 | 0.056* | |
| C18 | 0.7576 (2) | 0.83240 (10) | 0.6629 (3) | 0.0411 (6) | |
| H18 | 0.8125 | 0.8179 | 0.7521 | 0.049* | |
| C19 | 1.0032 (2) | 0.83746 (9) | 1.0316 (3) | 0.0336 (5) | |
| C20 | 1.0629 (3) | 0.76423 (12) | 1.2133 (4) | 0.0577 (8) | |
| H20A | 1.0048 | 0.7778 | 1.3013 | 0.087* | |
| H20B | 1.1420 | 0.7482 | 1.2682 | 0.087* | |
| H20C | 1.0150 | 0.7376 | 1.1441 | 0.087* | |
| C21 | 1.3202 (2) | 0.86405 (10) | 0.9391 (3) | 0.0376 (5) | |
| C22 | 1.4343 (3) | 0.78357 (12) | 0.8747 (4) | 0.0528 (7) | |
| H22A | 1.5076 | 0.7961 | 0.8061 | 0.079* | |
| H22B | 1.4102 | 0.7475 | 0.8400 | 0.079* | |
| H22C | 1.4619 | 0.7838 | 0.9962 | 0.079* | |
| N1 | 1.07206 (16) | 0.96508 (7) | 0.8086 (2) | 0.0243 (4) | |
| N2 | 0.85368 (17) | 0.94658 (7) | 0.8381 (2) | 0.0278 (4) | |
| N3 | 1.41453 (19) | 1.00265 (9) | 0.7614 (3) | 0.0411 (5) | |
| O1 | 1.10343 (16) | 0.80841 (7) | 1.1015 (2) | 0.0403 (4) | |
| O2 | 0.88636 (17) | 0.82715 (7) | 1.0552 (2) | 0.0449 (5) | |
| O3 | 1.31742 (17) | 0.81903 (7) | 0.8471 (2) | 0.0451 (5) | |
| O4 | 1.4114 (2) | 0.87751 (9) | 1.0281 (3) | 0.0648 (6) |
| C1 | 0.0323 (11) | 0.0244 (11) | 0.0247 (10) | −0.0022 (9) | −0.0037 (8) | −0.0041 (8) |
| C2 | 0.0466 (13) | 0.0273 (12) | 0.0285 (11) | −0.0057 (10) | 0.0002 (10) | −0.0019 (9) |
| C3 | 0.0513 (15) | 0.0310 (13) | 0.0385 (13) | 0.0007 (11) | 0.0013 (11) | −0.0045 (10) |
| C4 | 0.0433 (14) | 0.0249 (12) | 0.0473 (14) | 0.0040 (10) | −0.0059 (11) | −0.0014 (10) |
| C5 | 0.0323 (12) | 0.0352 (13) | 0.0399 (13) | 0.0041 (10) | −0.0055 (10) | −0.0037 (10) |
| C6 | 0.0274 (10) | 0.0230 (11) | 0.0343 (11) | 0.0022 (9) | −0.0014 (9) | −0.0041 (9) |
| C7 | 0.0232 (10) | 0.0269 (11) | 0.0254 (10) | −0.0068 (8) | 0.0006 (8) | −0.0034 (8) |
| C8 | 0.0264 (10) | 0.0329 (12) | 0.0257 (10) | −0.0025 (9) | 0.0022 (8) | −0.0034 (9) |
| C9 | 0.0301 (11) | 0.0342 (13) | 0.0255 (10) | −0.0010 (9) | −0.0045 (9) | −0.0033 (9) |
| C10 | 0.0238 (10) | 0.0337 (13) | 0.0284 (10) | 0.0024 (9) | −0.0040 (8) | −0.0013 (9) |
| C11 | 0.0260 (11) | 0.0289 (12) | 0.0448 (13) | 0.0028 (9) | −0.0003 (10) | −0.0014 (10) |
| C12 | 0.0189 (10) | 0.0365 (13) | 0.0428 (13) | −0.0071 (9) | 0.0074 (9) | −0.0026 (10) |
| C13 | 0.0175 (9) | 0.0341 (12) | 0.0361 (12) | −0.0056 (9) | 0.0054 (8) | 0.0021 (9) |
| C14 | 0.0381 (13) | 0.0348 (13) | 0.0444 (13) | −0.0044 (10) | −0.0116 (10) | −0.0010 (11) |
| C15 | 0.0522 (15) | 0.0540 (17) | 0.0316 (13) | −0.0098 (13) | −0.0143 (11) | 0.0006 (11) |
| C16 | 0.0535 (16) | 0.0536 (17) | 0.0406 (14) | −0.0132 (13) | −0.0033 (12) | −0.0178 (12) |
| C17 | 0.0485 (15) | 0.0460 (15) | 0.0457 (15) | −0.0021 (12) | 0.0038 (12) | −0.0133 (12) |
| C18 | 0.0398 (13) | 0.0361 (14) | 0.0466 (14) | 0.0050 (11) | −0.0073 (11) | −0.0077 (11) |
| C19 | 0.0377 (13) | 0.0303 (13) | 0.0321 (12) | 0.0005 (10) | −0.0074 (10) | −0.0015 (9) |
| C20 | 0.076 (2) | 0.0544 (18) | 0.0425 (15) | 0.0009 (15) | 0.0044 (14) | 0.0349 (13) |
| C21 | 0.0348 (12) | 0.0373 (14) | 0.0403 (13) | 0.0018 (10) | −0.0031 (10) | 0.0009 (11) |
| C22 | 0.0480 (15) | 0.0571 (18) | 0.0535 (16) | 0.0282 (13) | 0.0064 (13) | −0.0133 (13) |
| N1 | 0.0211 (8) | 0.0270 (9) | 0.0249 (9) | −0.0030 (7) | 0.0014 (7) | −0.0028 (7) |
| N2 | 0.0221 (8) | 0.0295 (10) | 0.0319 (9) | −0.0045 (7) | 0.0000 (7) | −0.0004 (7) |
| N3 | 0.0303 (10) | 0.0528 (14) | 0.0404 (11) | −0.0052 (10) | 0.0049 (8) | 0.0129 (10) |
| O1 | 0.0418 (9) | 0.0435 (10) | 0.0356 (9) | 0.0077 (8) | 0.0030 (7) | 0.0184 (7) |
| O2 | 0.0395 (10) | 0.0547 (11) | 0.0399 (9) | −0.0098 (8) | −0.0049 (7) | 0.0225 (8) |
| O3 | 0.0467 (10) | 0.0461 (11) | 0.0422 (9) | 0.0157 (8) | −0.0041 (8) | −0.0152 (8) |
| O4 | 0.0576 (12) | 0.0899 (16) | 0.0452 (11) | 0.0140 (11) | −0.0211 (10) | −0.0184 (11) |
| C1—C2 | 1.384 (3) | C12—H12B | 0.9700 |
| C1—C6 | 1.394 (3) | C13—C14 | 1.357 (3) |
| C1—N1 | 1.401 (3) | C13—C18 | 1.398 (3) |
| C2—C3 | 1.379 (3) | C14—C15 | 1.392 (3) |
| C2—H2 | 0.9300 | C14—H14 | 0.9300 |
| C3—C4 | 1.410 (4) | C15—C16 | 1.395 (4) |
| C3—H3 | 0.9300 | C15—H15 | 0.9300 |
| C4—C5 | 1.392 (3) | C16—C17 | 1.352 (4) |
| C4—H4 | 0.9300 | C16—H16 | 0.9300 |
| C5—C6 | 1.366 (3) | C17—C18 | 1.405 (3) |
| C5—H5 | 0.9300 | C17—H17 | 0.9300 |
| C6—N2 | 1.414 (3) | C18—H18 | 0.9300 |
| C7—N1 | 1.365 (3) | C19—O2 | 1.201 (3) |
| C7—N2 | 1.371 (3) | C19—O1 | 1.321 (3) |
| C7—C8 | 1.402 (3) | C20—O1 | 1.454 (3) |
| C8—C9 | 1.429 (3) | C20—H20A | 0.9600 |
| C8—C19 | 1.477 (3) | C20—H20B | 0.9600 |
| C9—C10 | 1.378 (3) | C20—H20C | 0.9600 |
| C9—C21 | 1.491 (3) | C21—O4 | 1.159 (3) |
| C10—N1 | 1.378 (3) | C21—O3 | 1.318 (3) |
| C10—C11 | 1.401 (3) | C22—O3 | 1.459 (3) |
| C11—N3 | 1.157 (3) | C22—H22A | 0.9600 |
| C12—N2 | 1.485 (3) | C22—H22B | 0.9600 |
| C12—C13 | 1.520 (3) | C22—H22C | 0.9600 |
| C12—H12A | 0.9700 | ||
| C2—C1—C6 | 123.7 (2) | C13—C14—H14 | 119.7 |
| C2—C1—N1 | 131.3 (2) | C15—C14—H14 | 119.7 |
| C6—C1—N1 | 104.97 (17) | C14—C15—C16 | 119.9 (2) |
| C3—C2—C1 | 115.5 (2) | C14—C15—H15 | 120.0 |
| C3—C2—H2 | 122.2 | C16—C15—H15 | 120.0 |
| C1—C2—H2 | 122.2 | C17—C16—C15 | 120.7 (2) |
| C2—C3—C4 | 121.2 (2) | C17—C16—H16 | 119.7 |
| C2—C3—H3 | 119.4 | C15—C16—H16 | 119.7 |
| C4—C3—H3 | 119.4 | C16—C17—C18 | 118.9 (3) |
| C5—C4—C3 | 122.1 (2) | C16—C17—H17 | 120.5 |
| C5—C4—H4 | 118.9 | C18—C17—H17 | 120.5 |
| C3—C4—H4 | 118.9 | C13—C18—C17 | 121.0 (2) |
| C6—C5—C4 | 116.5 (2) | C13—C18—H18 | 119.5 |
| C6—C5—H5 | 121.7 | C17—C18—H18 | 119.5 |
| C4—C5—H5 | 121.7 | O2—C19—O1 | 122.2 (2) |
| C5—C6—C1 | 120.9 (2) | O2—C19—C8 | 127.4 (2) |
| C5—C6—N2 | 129.9 (2) | O1—C19—C8 | 110.4 (2) |
| C1—C6—N2 | 109.22 (17) | O1—C20—H20A | 109.5 |
| N1—C7—N2 | 108.65 (18) | O1—C20—H20B | 109.5 |
| N1—C7—C8 | 108.36 (18) | H20A—C20—H20B | 109.5 |
| N2—C7—C8 | 142.99 (19) | O1—C20—H20C | 109.5 |
| C7—C8—C9 | 104.67 (19) | H20A—C20—H20C | 109.5 |
| C7—C8—C19 | 126.24 (19) | H20B—C20—H20C | 109.5 |
| C9—C8—C19 | 128.1 (2) | O4—C21—O3 | 124.0 (2) |
| C10—C9—C8 | 110.22 (19) | O4—C21—C9 | 123.7 (2) |
| C10—C9—C21 | 120.5 (2) | O3—C21—C9 | 112.17 (19) |
| C8—C9—C21 | 129.1 (2) | O3—C22—H22A | 109.5 |
| N1—C10—C9 | 105.65 (18) | O3—C22—H22B | 109.5 |
| N1—C10—C11 | 124.6 (2) | H22A—C22—H22B | 109.5 |
| C9—C10—C11 | 129.77 (19) | O3—C22—H22C | 109.5 |
| N3—C11—C10 | 177.5 (2) | H22A—C22—H22C | 109.5 |
| N2—C12—C13 | 109.47 (17) | H22B—C22—H22C | 109.5 |
| N2—C12—H12A | 109.8 | C7—N1—C10 | 111.09 (17) |
| C13—C12—H12A | 109.8 | C7—N1—C1 | 110.29 (17) |
| N2—C12—H12B | 109.8 | C10—N1—C1 | 138.55 (18) |
| C13—C12—H12B | 109.8 | C7—N2—C6 | 106.77 (16) |
| H12A—C12—H12B | 108.2 | C7—N2—C12 | 126.79 (18) |
| C14—C13—C18 | 119.0 (2) | C6—N2—C12 | 124.71 (17) |
| C14—C13—C12 | 120.0 (2) | C19—O1—C20 | 115.5 (2) |
| C18—C13—C12 | 121.1 (2) | C21—O3—C22 | 115.44 (19) |
| C13—C14—C15 | 120.6 (2) |