Literature DB >> 21578852

2,3-O-Isopropyl-idene-3-C-phenyl-erythrofuran-ose.

Tony V Robinson, Dennis K Taylor, Edward R T Tiekink.   

Abstract

The title compound, C(13)H(16)O, comprises two fused five-membered rings. Each ring has an envelope conformation, with the ether O atom in the furan-ose ring, and the CMe(2) atom in the acetonide ring as the flap atoms. In the crystal, centrosymmetrically related mol-ecules associate via hydr-oxy-ether O-H⋯O hydrogen bonds and the resulting dimers are linked into a supra-molecular chain with a flattened topology via C-H⋯O(hydr-oxy) contacts, and aligned in the a-axis direction.

Entities:  

Year:  2009        PMID: 21578852      PMCID: PMC2972136          DOI: 10.1107/S160053680904848X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the relevance and chemistry of systems related to the title compound, see: Pedersen et al. (2009 ▶); Robinson et al. (2006 ▶, 2009 ▶); Valente et al. (2009 ▶). For the reactions of Co(II) complexes with endoperoxides, see: Boyd et al. (1980 ▶); Sutbeyaz et al. (1988 ▶); Greatrex et al. (2003 ▶); Greatrex & Taylor (2005 ▶).

Experimental

Crystal data

C13H16O4 M = 236.26 Triclinic, a = 5.716 (2) Å b = 9.201 (4) Å c = 11.871 (6) Å α = 89.76 (3)° β = 78.72 (2)° γ = 73.70 (2)° V = 586.9 (4) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 173 K 0.35 × 0.35 × 0.10 mm

Data collection

Rigaku AFC12κ/SATURN724 diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.773, T max = 1.000 14572 measured reflections 2408 independent reflections 2361 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.157 S = 1.16 2408 reflections 157 parameters 1 restraint H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680904848X/sj2687sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680904848X/sj2687Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H16O4Z = 2
Mr = 236.26F(000) = 252
Triclinic, P1Dx = 1.337 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71070 Å
a = 5.716 (2) ÅCell parameters from 2428 reflections
b = 9.201 (4) Åθ = 3.5–27.5°
c = 11.871 (6) ŵ = 0.10 mm1
α = 89.76 (3)°T = 173 K
β = 78.72 (2)°Prism, pale-yellow
γ = 73.70 (2)°0.35 × 0.35 × 0.10 mm
V = 586.9 (4) Å3
Rigaku AFC12κ/SATURN724 diffractometer2408 independent reflections
Radiation source: fine-focus sealed tube2361 reflections with I > 2σ(I)
graphiteRint = 0.030
ω scansθmax = 26.5°, θmin = 1.8°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −7→7
Tmin = 0.773, Tmax = 1.000k = −10→11
14572 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.157H-atom parameters constrained
S = 1.16w = 1/[σ2(Fo2) + (0.0929P)2 + 0.1356P] where P = (Fo2 + 2Fc2)/3
2408 reflections(Δ/σ)max < 0.001
157 parametersΔρmax = 0.27 e Å3
1 restraintΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.11375 (18)0.89747 (11)0.40885 (9)0.0294 (3)
O20.29860 (19)0.86868 (13)0.42473 (9)0.0335 (3)
H2O0.26830.93940.47470.050*
O30.1029 (2)0.87393 (12)0.15795 (9)0.0321 (3)
O4−0.09610 (17)0.69527 (11)0.20274 (8)0.0270 (3)
C20.1242 (3)0.91139 (17)0.35425 (12)0.0281 (3)
H20.11021.01700.32960.034*
C30.2058 (3)0.79968 (16)0.25019 (12)0.0264 (3)
H30.39050.75480.22910.032*
C40.0642 (2)0.67820 (16)0.28391 (11)0.0248 (3)
C5−0.0944 (3)0.73843 (16)0.40319 (12)0.0273 (3)
H5A−0.26120.72260.41200.033*
H5B−0.01300.68640.46450.033*
C6−0.0013 (3)0.77251 (17)0.10732 (12)0.0300 (4)
C410.2235 (2)0.51612 (16)0.28472 (12)0.0263 (3)
C420.4230 (3)0.48304 (18)0.34152 (13)0.0322 (4)
H420.46200.56300.37720.039*
C430.5645 (3)0.33463 (19)0.34623 (15)0.0380 (4)
H430.70000.31350.38490.046*
C440.5092 (3)0.21693 (18)0.29478 (14)0.0378 (4)
H440.60590.11510.29820.045*
C450.3115 (3)0.24891 (18)0.23827 (13)0.0362 (4)
H450.27350.16860.20250.043*
C460.1683 (3)0.39770 (17)0.23361 (12)0.0307 (4)
H460.03230.41840.19530.037*
C610.1984 (3)0.6632 (2)0.02004 (14)0.0398 (4)
H61A0.12520.5942−0.01410.060*
H61B0.32940.60450.05820.060*
H61C0.27010.7202−0.04050.060*
C62−0.2175 (3)0.8637 (2)0.05769 (14)0.0397 (4)
H62A−0.28980.79480.02290.060*
H62B−0.15910.9276−0.00110.060*
H62C−0.34390.92790.11910.060*
U11U22U33U12U13U23
O10.0253 (5)0.0272 (6)0.0334 (6)−0.0055 (4)−0.0032 (4)−0.0028 (4)
O20.0280 (6)0.0361 (6)0.0352 (6)−0.0045 (4)−0.0103 (4)−0.0069 (4)
O30.0409 (6)0.0306 (6)0.0301 (6)−0.0151 (5)−0.0124 (4)0.0082 (4)
O40.0261 (5)0.0309 (6)0.0258 (5)−0.0093 (4)−0.0082 (4)0.0054 (4)
C20.0248 (7)0.0279 (7)0.0316 (7)−0.0071 (5)−0.0062 (5)0.0009 (6)
C30.0258 (7)0.0266 (7)0.0272 (7)−0.0083 (5)−0.0051 (5)0.0028 (5)
C40.0236 (7)0.0282 (8)0.0237 (7)−0.0080 (5)−0.0066 (5)0.0025 (5)
C50.0258 (7)0.0279 (8)0.0274 (7)−0.0071 (5)−0.0042 (5)0.0014 (5)
C60.0343 (8)0.0326 (8)0.0258 (7)−0.0128 (6)−0.0079 (6)0.0056 (6)
C410.0265 (7)0.0271 (8)0.0243 (6)−0.0075 (6)−0.0030 (5)0.0025 (5)
C420.0308 (8)0.0308 (8)0.0358 (8)−0.0077 (6)−0.0105 (6)0.0022 (6)
C430.0332 (8)0.0367 (9)0.0420 (9)−0.0038 (6)−0.0114 (7)0.0070 (7)
C440.0419 (9)0.0275 (8)0.0365 (8)−0.0006 (6)−0.0037 (7)0.0053 (6)
C450.0479 (9)0.0276 (8)0.0325 (8)−0.0108 (7)−0.0065 (7)0.0011 (6)
C460.0347 (8)0.0304 (8)0.0283 (7)−0.0102 (6)−0.0080 (6)0.0031 (6)
C610.0430 (9)0.0468 (10)0.0281 (8)−0.0141 (7)−0.0015 (6)−0.0018 (7)
C620.0437 (9)0.0442 (10)0.0355 (8)−0.0130 (7)−0.0176 (7)0.0125 (7)
O1—C21.4278 (18)C41—C461.388 (2)
O1—C51.4370 (19)C41—C421.397 (2)
O2—C21.3972 (17)C42—C431.385 (2)
O2—H2O0.8400C42—H420.9500
O3—C61.4295 (18)C43—C441.385 (3)
O3—C31.4254 (17)C43—H430.9500
O4—C61.4323 (18)C44—C451.386 (2)
O4—C41.4339 (16)C44—H440.9500
C2—C31.522 (2)C45—C461.391 (2)
C2—H21.0000C45—H450.9500
C3—C41.563 (2)C46—H460.9500
C3—H31.0000C61—H61A0.9800
C4—C411.515 (2)C61—H61B0.9800
C4—C51.535 (2)C61—H61C0.9800
C5—H5A0.9900C62—H62A0.9800
C5—H5B0.9900C62—H62B0.9800
C6—C621.509 (2)C62—H62C0.9800
C6—C611.513 (2)
C2—O1—C5106.30 (11)O4—C6—C61111.43 (13)
C2—O2—H2O107.7C62—C6—C61113.45 (14)
C6—O3—C3107.42 (11)C46—C41—C42118.91 (14)
C6—O4—C4108.29 (10)C46—C41—C4120.93 (13)
O2—C2—O1111.99 (12)C42—C41—C4120.10 (13)
O2—C2—C3108.35 (12)C43—C42—C41120.58 (15)
O1—C2—C3104.47 (11)C43—C42—H42119.7
O2—C2—H2110.6C41—C42—H42119.7
O1—C2—H2110.6C44—C43—C42120.26 (15)
C3—C2—H2110.6C44—C43—H43119.9
O3—C3—C2108.22 (12)C42—C43—H43119.9
O3—C3—C4104.64 (11)C43—C44—C45119.46 (15)
C2—C3—C4104.60 (11)C43—C44—H44120.3
O3—C3—H3112.9C45—C44—H44120.3
C2—C3—H3112.9C46—C45—C44120.51 (15)
C4—C3—H3112.9C46—C45—H45119.7
O4—C4—C41112.22 (11)C44—C45—H45119.7
O4—C4—C5108.90 (11)C45—C46—C41120.27 (14)
C41—C4—C5112.12 (12)C45—C46—H46119.9
O4—C4—C3103.36 (10)C41—C46—H46119.9
C41—C4—C3116.44 (11)C6—C61—H61A109.5
C5—C4—C3102.99 (11)C6—C61—H61B109.5
O1—C5—C4105.33 (11)H61A—C61—H61B109.5
O1—C5—H5A110.7C6—C61—H61C109.5
C4—C5—H5A110.7H61A—C61—H61C109.5
O1—C5—H5B110.7H61B—C61—H61C109.5
C4—C5—H5B110.7C6—C62—H62A109.5
H5A—C5—H5B108.8C6—C62—H62B109.5
O3—C6—O4104.00 (11)H62A—C62—H62B109.5
O3—C6—C62109.07 (13)C6—C62—H62C109.5
O4—C6—C62108.34 (12)H62A—C62—H62C109.5
O3—C6—C61110.10 (13)H62B—C62—H62C109.5
C5—O1—C2—O2−76.45 (14)C3—O3—C6—O434.96 (14)
C5—O1—C2—C340.60 (13)C3—O3—C6—C62150.39 (12)
C6—O3—C3—C2−133.84 (12)C3—O3—C6—C61−84.52 (14)
C6—O3—C3—C4−22.73 (13)C4—O4—C6—O3−33.70 (14)
O2—C2—C3—O3−154.79 (11)C4—O4—C6—C62−149.65 (13)
O1—C2—C3—O385.67 (13)C4—O4—C6—C6184.87 (14)
O2—C2—C3—C494.07 (13)O4—C4—C41—C46−14.92 (18)
O1—C2—C3—C4−25.47 (13)C5—C4—C41—C46108.02 (15)
C6—O4—C4—C41−107.03 (13)C3—C4—C41—C46−133.74 (14)
C6—O4—C4—C5128.23 (12)O4—C4—C41—C42167.76 (12)
C6—O4—C4—C319.23 (13)C5—C4—C41—C42−69.29 (16)
O3—C3—C4—O42.14 (13)C3—C4—C41—C4248.95 (18)
C2—C3—C4—O4115.84 (12)C46—C41—C42—C430.4 (2)
O3—C3—C4—C41125.66 (12)C4—C41—C42—C43177.73 (13)
C2—C3—C4—C41−120.64 (13)C41—C42—C43—C44−0.2 (2)
O3—C3—C4—C5−111.22 (12)C42—C43—C44—C450.2 (2)
C2—C3—C4—C52.48 (13)C43—C44—C45—C46−0.4 (2)
C2—O1—C5—C4−39.18 (13)C44—C45—C46—C410.6 (2)
O4—C4—C5—O1−88.03 (13)C42—C41—C46—C45−0.6 (2)
C41—C4—C5—O1147.17 (11)C4—C41—C46—C45−177.92 (13)
C3—C4—C5—O121.22 (13)
D—H···AD—HH···AD···AD—H···A
O2—H2o···O1i0.841.932.755 (2)166
C5—H5a···O2ii0.992.473.296 (3)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2o⋯O1i 0.841.932.755 (2)166
C5—H5a⋯O2ii 0.992.473.296 (3)140

Symmetry codes: (i) ; (ii) .

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