Literature DB >> 21578849

(2R,3R)-3-(2-Chloro-phen-yl)-N-phenyl-oxirane-2-carboxamide.

Lian-Mei Chen1, Tai-Ran Kang.   

Abstract

In the title compound, C(15)H(12)n class="Chemical">ClNO(2), the two benzene rings adopt a syn configuration with respect to the ep-oxy ring; the dihedral angles between the ep-oxy ring and the two benzene rings are 59.71 (16) and 67.58 (15)°. There is a weak intra-molecular N-H⋯O bond, which may help to establish the conformation. In the crystal, the mol-ecules are linked into a chain parallel to the b axis through inter-molecular N-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21578849      PMCID: PMC2971895          DOI: 10.1107/S1600536809048442

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of epoxide-containing compounds as building blocks in the n class="Gene">synthesis of biologically active compounds, see: Flisak et al. (1993 ▶); Porter & Skidmore (2000 ▶); Shing et al. (2006 ▶); Watanabe et al. (1998 ▶); Zhu & Espenson (1995 ▶). For the isostructuralbromo compound, 3-(2-bromo­phen­yl)-N-phenyl­oxirane-2-carboxamide, see: He et al. (2009 ▶). For related structures, see: He (2009 ▶); He & Chen (2009 ▶).

Experimental

Crystal data

C15H12ClNO2 M = 273.71 Orthorhombic, a = 6.6610 (1) Å b = 10.0343 (2) Å c = 20.2433 (3) Å V = 1353.03 (4) Å3 Z = 4 Cu Kα radiation μ = 2.48 mm−1 T = 295 K 0.36 × 0.32 × 0.30 mm

Data collection

Oxford Diffraction Gemini S Ultra diffractometer Absorption correction: multi-scan (CrysAlis Pro; Oxford Diffraction, 2009 ▶) T min = 0.469, T max = 0.524 9086 measured reflections 2373 independent reflections 2100 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.109 S = 1.20 2373 reflections 172 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.26 e Å−3 Absolute structure: Flack (1983 ▶), 864 Friedel pairs Flack parameter: 0.01 (2) Data collection: CrysAlis Pro (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis Pro; data reduction: CrysAlis Pro; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809048442/dn2512sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809048442/dn2512Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12ClNO2F(000) = 568
Mr = 273.71Dx = 1.344 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54184 Å
Hall symbol: P 2ac 2abCell parameters from 9390 reflections
a = 6.6610 (1) Åθ = 4.4–72.1°
b = 10.0343 (2) ŵ = 2.48 mm1
c = 20.2433 (3) ÅT = 295 K
V = 1353.03 (4) Å3Block, colourless
Z = 40.36 × 0.32 × 0.30 mm
Oxford Diffraction Gemini S Ultra diffractometer2373 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source2100 reflections with I > 2σ(I)
mirrorRint = 0.026
Detector resolution: 15.9149 pixels mm-1θmax = 70.0°, θmin = 4.4°
ω scansh = −4→8
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −12→12
Tmin = 0.469, Tmax = 0.524l = −24→24
9086 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.031H-atom parameters constrained
wR(F2) = 0.109w = 1/[σ2(Fo2) + (0.0455P)2 + 0.2775P] where P = (Fo2 + 2Fc2)/3
S = 1.20(Δ/σ)max < 0.001
2373 reflectionsΔρmax = 0.15 e Å3
172 parametersΔρmin = −0.26 e Å3
0 restraintsAbsolute structure: Flack (1983), 864 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.01 (2)
Experimental. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. CrysAlisPro (Oxford Diffraction, 2009)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4506 (5)1.0038 (3)0.44438 (13)0.0628 (7)
C20.2775 (5)1.0218 (3)0.48079 (15)0.0783 (9)
H20.25681.10090.50380.094*
C30.1355 (6)0.9220 (4)0.48286 (16)0.0815 (9)
H30.02000.93340.50800.098*
C40.1626 (5)0.8067 (3)0.44834 (16)0.0785 (8)
H40.06560.74010.44950.094*
C50.3367 (5)0.7894 (3)0.41138 (14)0.0673 (7)
H50.35470.71090.38770.081*
C60.4835 (4)0.8867 (2)0.40921 (12)0.0559 (6)
C70.6754 (4)0.8661 (3)0.37349 (13)0.0602 (6)
H70.79570.89310.39790.072*
C80.6969 (4)0.8680 (2)0.30113 (13)0.0571 (6)
H80.82810.89690.28450.069*
C90.5200 (4)0.9026 (2)0.25827 (12)0.0519 (5)
C100.2091 (4)0.8095 (2)0.20952 (11)0.0485 (5)
C110.0848 (4)0.7002 (2)0.21366 (14)0.0591 (6)
H110.12030.62880.24050.071*
C12−0.0942 (5)0.6958 (3)0.17779 (15)0.0719 (8)
H12−0.17690.62130.18030.086*
C13−0.1475 (5)0.8020 (3)0.13874 (14)0.0737 (8)
H13−0.26550.79930.11420.088*
C14−0.0262 (5)0.9114 (3)0.13617 (14)0.0734 (8)
H14−0.06520.98400.11060.088*
C150.1546 (5)0.9176 (3)0.17082 (13)0.0618 (6)
H150.23660.99240.16800.074*
Cl10.63034 (15)1.12873 (8)0.44179 (4)0.0905 (3)
N10.3914 (3)0.80345 (18)0.24575 (10)0.0524 (5)
H10.42290.72670.26160.063*
O10.6959 (3)0.74497 (17)0.33669 (10)0.0666 (5)
O20.5063 (3)1.01692 (16)0.23815 (11)0.0732 (6)
U11U22U33U12U13U23
C10.0775 (18)0.0568 (13)0.0540 (12)0.0057 (14)−0.0038 (13)0.0006 (12)
C20.100 (2)0.0729 (19)0.0619 (15)0.0152 (19)0.0041 (16)−0.0041 (14)
C30.074 (2)0.098 (2)0.0730 (17)0.004 (2)0.0099 (16)0.0101 (17)
C40.076 (2)0.082 (2)0.0773 (18)−0.0094 (18)−0.0062 (17)0.0141 (17)
C50.0738 (19)0.0615 (15)0.0667 (15)−0.0019 (15)−0.0138 (15)0.0035 (13)
C60.0609 (15)0.0507 (12)0.0561 (12)0.0041 (13)−0.0142 (11)0.0003 (11)
C70.0592 (16)0.0489 (12)0.0725 (14)0.0062 (13)−0.0135 (12)−0.0100 (12)
C80.0577 (15)0.0389 (11)0.0748 (15)0.0054 (12)−0.0031 (12)−0.0085 (11)
C90.0551 (14)0.0364 (10)0.0640 (13)−0.0004 (11)−0.0007 (11)−0.0090 (10)
C100.0525 (14)0.0422 (11)0.0508 (11)−0.0012 (11)0.0024 (10)−0.0061 (10)
C110.0620 (16)0.0448 (12)0.0704 (14)−0.0027 (12)0.0007 (12)−0.0039 (11)
C120.0711 (19)0.0627 (16)0.0817 (18)−0.0081 (15)0.0004 (15)−0.0113 (14)
C130.0618 (17)0.089 (2)0.0700 (16)−0.0041 (18)−0.0101 (14)−0.0109 (15)
C140.0758 (19)0.0778 (18)0.0666 (15)0.0019 (17)−0.0127 (14)0.0110 (14)
C150.0706 (17)0.0517 (13)0.0630 (13)−0.0048 (13)−0.0055 (13)0.0068 (12)
Cl10.1070 (7)0.0629 (4)0.1016 (5)−0.0142 (5)0.0117 (5)−0.0220 (4)
N10.0576 (12)0.0362 (8)0.0632 (11)0.0002 (9)−0.0047 (9)0.0007 (8)
O10.0723 (12)0.0446 (9)0.0830 (12)0.0140 (9)−0.0153 (10)−0.0070 (9)
O20.0799 (13)0.0359 (8)0.1039 (14)−0.0044 (9)−0.0200 (11)0.0020 (9)
C1—C21.381 (4)C8—H80.9800
C1—C61.391 (3)C9—O21.221 (3)
C1—Cl11.734 (3)C9—N11.337 (3)
C2—C31.378 (5)C10—C111.377 (3)
C2—H20.9300C10—C151.387 (4)
C3—C41.364 (5)C10—N11.420 (3)
C3—H30.9300C11—C121.397 (4)
C4—C51.391 (5)C11—H110.9300
C4—H40.9300C12—C131.374 (4)
C5—C61.383 (4)C12—H120.9300
C5—H50.9300C13—C141.364 (4)
C6—C71.483 (4)C13—H130.9300
C7—O11.432 (3)C14—C151.395 (4)
C7—C81.472 (4)C14—H140.9300
C7—H70.9800C15—H150.9300
C8—O11.429 (3)N1—H10.8600
C8—C91.504 (4)
C2—C1—C6121.0 (3)C7—C8—H8115.6
C2—C1—Cl1119.9 (2)C9—C8—H8115.6
C6—C1—Cl1119.1 (2)O2—C9—N1126.0 (2)
C3—C2—C1119.6 (3)O2—C9—C8117.9 (2)
C3—C2—H2120.2N1—C9—C8116.1 (2)
C1—C2—H2120.2C11—C10—C15120.0 (2)
C4—C3—C2120.7 (3)C11—C10—N1116.7 (2)
C4—C3—H3119.7C15—C10—N1123.3 (2)
C2—C3—H3119.7C10—C11—C12120.5 (3)
C3—C4—C5119.5 (3)C10—C11—H11119.8
C3—C4—H4120.3C12—C11—H11119.8
C5—C4—H4120.3C13—C12—C11119.7 (3)
C6—C5—C4121.2 (3)C13—C12—H12120.1
C6—C5—H5119.4C11—C12—H12120.1
C4—C5—H5119.4C14—C13—C12119.6 (3)
C5—C6—C1118.0 (3)C14—C13—H13120.2
C5—C6—C7121.7 (2)C12—C13—H13120.2
C1—C6—C7120.2 (2)C13—C14—C15121.9 (3)
O1—C7—C858.96 (16)C13—C14—H14119.1
O1—C7—C6117.0 (2)C15—C14—H14119.1
C8—C7—C6124.5 (2)C10—C15—C14118.4 (3)
O1—C7—H7114.8C10—C15—H15120.8
C8—C7—H7114.8C14—C15—H15120.8
C6—C7—H7114.8C9—N1—C10127.89 (19)
O1—C8—C759.12 (16)C9—N1—H1116.1
O1—C8—C9119.1 (2)C10—N1—H1116.1
C7—C8—C9120.1 (2)C8—O1—C761.92 (15)
O1—C8—H8115.6
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.862.382.801 (3)111
N1—H1···O2i0.862.162.973 (2)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O10.862.382.801 (3)111
N1—H1⋯O2i 0.862.162.973 (2)158

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3-(3-Chloro-phen-yl)-N-phenyl-oxirane-2-carboxamide.

Authors:  Long He; Lian-Mei Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-04

3.  3-(2-Bromo-phen-yl)-N-phenyl-oxirane-2-carboxamide.

Authors:  Long He; Hong-Mei Qin; Lian-Mei Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-04

4.  3-(4-Nitro-phen-yl)-N-phenyl-oxirane-2-carboxamide.

Authors:  Long He
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-31

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  3-(3-Cyano-phen-yl)-N-phenyl-oxirane-2-carboxamide.

Authors:  Tai-Ran Kang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-25
  1 in total

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