| Literature DB >> 21578847 |
Tony V Robinson, Dennis K Taylor, Edward R T Tiekink.
Abstract
In the title compound, C(13)H(22)O(4), the acetonide ring adopts an envelope conformation with one of the O atoms as the flap atom, whereas a twisted conformation is found for the furan-ose ring. Centrosymmetric eight-membered {⋯OCOH}(2) synthons involving the hydr-oxy H and acetonide O atoms are found in the crystal structure. These are linked into a supra-molecular chain in the a-axis direction via C-H⋯O contacts.Entities:
Year: 2009 PMID: 21578847 PMCID: PMC2972000 DOI: 10.1107/S1600536809048557
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H22O4 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 657 reflections | |
| θ = 2.1–30.2° | |
| µ = 0.09 mm−1 | |
| α = 93.29 (3)° | |
| β = 94.95 (4)° | Needle, colourless |
| γ = 102.94 (3)° | 0.24 × 0.15 × 0.13 mm |
| Rigaku AFC12K/SATURN724 diffractometer | 2224 independent reflections |
| Radiation source: fine-focus sealed tube | 2064 reflections with |
| graphite | |
| ω scans | θmax = 25.0°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 4992 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2224 reflections | (Δ/σ)max < 0.001 |
| 156 parameters | Δρmax = 0.18 e Å−3 |
| 1 restraint | Δρmin = −0.20 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.69690 (18) | 0.26256 (11) | 0.70713 (8) | 0.0281 (3) | |
| O2 | 1.0523 (2) | 0.34466 (12) | 0.62499 (9) | 0.0352 (3) | |
| O3 | 0.9937 (2) | 0.48884 (11) | 0.85907 (9) | 0.0377 (3) | |
| O4 | 1.0310 (3) | 0.31604 (12) | 0.97416 (9) | 0.0439 (4) | |
| H4O | 1.0281 | 0.3703 | 1.0282 | 0.066* | |
| C1 | 0.7854 (3) | 0.33328 (17) | 0.61509 (12) | 0.0312 (4) | |
| C2 | 1.1367 (3) | 0.33878 (16) | 0.73567 (13) | 0.0320 (4) | |
| H2 | 1.2783 | 0.2898 | 0.7425 | 0.038* | |
| C3 | 0.9031 (3) | 0.25734 (15) | 0.78511 (12) | 0.0270 (4) | |
| C4 | 0.8885 (3) | 0.35109 (16) | 0.88634 (12) | 0.0327 (4) | |
| H4 | 0.7088 | 0.3415 | 0.9019 | 0.039* | |
| C5 | 1.2089 (3) | 0.47939 (18) | 0.80110 (15) | 0.0410 (4) | |
| H5A | 1.3609 | 0.4853 | 0.8524 | 0.049* | |
| H5B | 1.2450 | 0.5556 | 0.7526 | 0.049* | |
| C6 | 0.7237 (3) | 0.47484 (18) | 0.61632 (14) | 0.0366 (4) | |
| H6A | 0.5397 | 0.4637 | 0.6085 | 0.055* | |
| H6B | 0.7959 | 0.5243 | 0.5562 | 0.055* | |
| H6C | 0.7954 | 0.5282 | 0.6850 | 0.055* | |
| C7 | 0.6697 (4) | 0.2440 (2) | 0.51267 (14) | 0.0446 (5) | |
| H7A | 0.4850 | 0.2278 | 0.5085 | 0.067* | |
| H7B | 0.7193 | 0.1549 | 0.5134 | 0.067* | |
| H7C | 0.7299 | 0.2916 | 0.4497 | 0.067* | |
| C8 | 0.9010 (3) | 0.10690 (15) | 0.80714 (12) | 0.0281 (4) | |
| H8 | 1.0454 | 0.1086 | 0.8629 | 0.034* | |
| C9 | 0.9368 (3) | 0.01889 (16) | 0.70736 (14) | 0.0353 (4) | |
| H9A | 0.7968 | 0.0159 | 0.6504 | 0.042* | |
| H9B | 1.0973 | 0.0623 | 0.6788 | 0.042* | |
| C10 | 0.9421 (3) | −0.12889 (17) | 0.73441 (16) | 0.0410 (4) | |
| H10A | 0.9581 | −0.1844 | 0.6677 | 0.049* | |
| H10B | 1.0915 | −0.1265 | 0.7863 | 0.049* | |
| C11 | 0.7028 (3) | −0.19803 (17) | 0.78331 (14) | 0.0363 (4) | |
| H11A | 0.5557 | −0.2117 | 0.7280 | 0.044* | |
| H11B | 0.7179 | −0.2905 | 0.8053 | 0.044* | |
| C12 | 0.6588 (3) | −0.11062 (17) | 0.88099 (14) | 0.0376 (4) | |
| H12A | 0.7936 | −0.1083 | 0.9402 | 0.045* | |
| H12B | 0.4948 | −0.1539 | 0.9067 | 0.045* | |
| C13 | 0.6576 (3) | 0.03762 (17) | 0.85399 (13) | 0.0343 (4) | |
| H13A | 0.6391 | 0.0929 | 0.9204 | 0.041* | |
| H13B | 0.5107 | 0.0361 | 0.8010 | 0.041* |
| O1 | 0.0218 (5) | 0.0379 (6) | 0.0252 (6) | 0.0082 (4) | 0.0014 (4) | 0.0048 (4) |
| O2 | 0.0277 (6) | 0.0454 (7) | 0.0345 (6) | 0.0098 (5) | 0.0089 (5) | 0.0062 (5) |
| O3 | 0.0485 (7) | 0.0307 (6) | 0.0335 (7) | 0.0112 (5) | −0.0019 (5) | −0.0002 (5) |
| O4 | 0.0662 (8) | 0.0383 (7) | 0.0279 (6) | 0.0212 (6) | −0.0115 (6) | −0.0033 (5) |
| C1 | 0.0266 (8) | 0.0414 (9) | 0.0262 (8) | 0.0078 (6) | 0.0047 (6) | 0.0051 (6) |
| C2 | 0.0240 (8) | 0.0352 (8) | 0.0373 (9) | 0.0082 (6) | 0.0009 (6) | 0.0041 (7) |
| C3 | 0.0234 (7) | 0.0332 (8) | 0.0250 (8) | 0.0095 (6) | −0.0009 (6) | −0.0001 (6) |
| C4 | 0.0413 (9) | 0.0312 (8) | 0.0264 (8) | 0.0125 (7) | −0.0015 (7) | 0.0008 (6) |
| C5 | 0.0334 (9) | 0.0370 (9) | 0.0483 (10) | 0.0027 (7) | −0.0044 (7) | 0.0023 (8) |
| C6 | 0.0343 (9) | 0.0440 (10) | 0.0337 (9) | 0.0121 (7) | 0.0037 (7) | 0.0100 (7) |
| C7 | 0.0490 (11) | 0.0548 (11) | 0.0272 (9) | 0.0082 (8) | −0.0003 (8) | 0.0005 (8) |
| C8 | 0.0260 (8) | 0.0313 (8) | 0.0272 (8) | 0.0084 (6) | 0.0005 (6) | 0.0000 (6) |
| C9 | 0.0347 (9) | 0.0351 (9) | 0.0373 (9) | 0.0079 (7) | 0.0124 (7) | −0.0006 (7) |
| C10 | 0.0407 (10) | 0.0329 (9) | 0.0506 (11) | 0.0097 (7) | 0.0137 (8) | −0.0047 (7) |
| C11 | 0.0380 (9) | 0.0314 (8) | 0.0378 (9) | 0.0050 (7) | 0.0042 (7) | −0.0006 (7) |
| C12 | 0.0432 (10) | 0.0365 (9) | 0.0340 (9) | 0.0088 (7) | 0.0070 (7) | 0.0061 (7) |
| C13 | 0.0369 (9) | 0.0369 (9) | 0.0319 (9) | 0.0119 (7) | 0.0107 (7) | 0.0027 (7) |
| O1—C3 | 1.4328 (18) | C7—H7A | 0.9800 |
| O1—C1 | 1.4392 (19) | C7—H7B | 0.9800 |
| O2—C2 | 1.423 (2) | C7—H7C | 0.9800 |
| O2—C1 | 1.429 (2) | C8—C9 | 1.528 (2) |
| O3—C4 | 1.429 (2) | C8—C13 | 1.531 (2) |
| O3—C5 | 1.447 (2) | C8—H8 | 1.0000 |
| O4—C4 | 1.392 (2) | C9—C10 | 1.527 (2) |
| O4—H4O | 0.8399 | C9—H9A | 0.9900 |
| C1—C7 | 1.512 (2) | C9—H9B | 0.9900 |
| C1—C6 | 1.513 (2) | C10—C11 | 1.526 (2) |
| C2—C5 | 1.526 (2) | C10—H10A | 0.9900 |
| C2—C3 | 1.544 (2) | C10—H10B | 0.9900 |
| C2—H2 | 1.0000 | C11—C12 | 1.519 (2) |
| C3—C8 | 1.529 (2) | C11—H11A | 0.9900 |
| C3—C4 | 1.540 (2) | C11—H11B | 0.9900 |
| C4—H4 | 1.0000 | C12—C13 | 1.527 (2) |
| C5—H5A | 0.9900 | C12—H12A | 0.9900 |
| C5—H5B | 0.9900 | C12—H12B | 0.9900 |
| C6—H6A | 0.9800 | C13—H13A | 0.9900 |
| C6—H6B | 0.9800 | C13—H13B | 0.9900 |
| C6—H6C | 0.9800 | ||
| C3—O1—C1 | 111.24 (11) | C1—C7—H7B | 109.5 |
| C2—O2—C1 | 108.79 (12) | H7A—C7—H7B | 109.5 |
| C4—O3—C5 | 105.95 (12) | C1—C7—H7C | 109.5 |
| C4—O4—H4O | 108.8 | H7A—C7—H7C | 109.5 |
| O2—C1—O1 | 105.26 (12) | H7B—C7—H7C | 109.5 |
| O2—C1—C7 | 108.62 (14) | C9—C8—C3 | 113.25 (13) |
| O1—C1—C7 | 109.15 (13) | C9—C8—C13 | 109.62 (13) |
| O2—C1—C6 | 111.35 (13) | C3—C8—C13 | 111.20 (12) |
| O1—C1—C6 | 110.47 (13) | C9—C8—H8 | 107.5 |
| C7—C1—C6 | 111.76 (14) | C3—C8—H8 | 107.5 |
| O2—C2—C5 | 114.39 (14) | C13—C8—H8 | 107.5 |
| O2—C2—C3 | 104.95 (12) | C10—C9—C8 | 111.22 (14) |
| C5—C2—C3 | 104.74 (13) | C10—C9—H9A | 109.4 |
| O2—C2—H2 | 110.8 | C8—C9—H9A | 109.4 |
| C5—C2—H2 | 110.8 | C10—C9—H9B | 109.4 |
| C3—C2—H2 | 110.8 | C8—C9—H9B | 109.4 |
| O1—C3—C8 | 110.40 (12) | H9A—C9—H9B | 108.0 |
| O1—C3—C4 | 108.10 (12) | C11—C10—C9 | 111.32 (14) |
| C8—C3—C4 | 114.24 (13) | C11—C10—H10A | 109.4 |
| O1—C3—C2 | 103.39 (12) | C9—C10—H10A | 109.4 |
| C8—C3—C2 | 116.55 (12) | C11—C10—H10B | 109.4 |
| C4—C3—C2 | 103.27 (12) | C9—C10—H10B | 109.4 |
| O4—C4—O3 | 111.08 (13) | H10A—C10—H10B | 108.0 |
| O4—C4—C3 | 109.45 (12) | C12—C11—C10 | 111.32 (14) |
| O3—C4—C3 | 104.59 (13) | C12—C11—H11A | 109.4 |
| O4—C4—H4 | 110.5 | C10—C11—H11A | 109.4 |
| O3—C4—H4 | 110.5 | C12—C11—H11B | 109.4 |
| C3—C4—H4 | 110.5 | C10—C11—H11B | 109.4 |
| O3—C5—C2 | 106.01 (13) | H11A—C11—H11B | 108.0 |
| O3—C5—H5A | 110.5 | C11—C12—C13 | 111.60 (14) |
| C2—C5—H5A | 110.5 | C11—C12—H12A | 109.3 |
| O3—C5—H5B | 110.5 | C13—C12—H12A | 109.3 |
| C2—C5—H5B | 110.5 | C11—C12—H12B | 109.3 |
| H5A—C5—H5B | 108.7 | C13—C12—H12B | 109.3 |
| C1—C6—H6A | 109.5 | H12A—C12—H12B | 108.0 |
| C1—C6—H6B | 109.5 | C12—C13—C8 | 111.60 (13) |
| H6A—C6—H6B | 109.5 | C12—C13—H13A | 109.3 |
| C1—C6—H6C | 109.5 | C8—C13—H13A | 109.3 |
| H6A—C6—H6C | 109.5 | C12—C13—H13B | 109.3 |
| H6B—C6—H6C | 109.5 | C8—C13—H13B | 109.3 |
| C1—C7—H7A | 109.5 | H13A—C13—H13B | 108.0 |
| C2—O2—C1—O1 | −24.16 (15) | C2—C3—C4—O4 | −89.45 (15) |
| C2—O2—C1—C7 | −140.95 (13) | O1—C3—C4—O3 | −79.48 (14) |
| C2—O2—C1—C6 | 95.56 (15) | C8—C3—C4—O3 | 157.20 (12) |
| C3—O1—C1—O2 | 12.78 (15) | C2—C3—C4—O3 | 29.63 (14) |
| C3—O1—C1—C7 | 129.21 (14) | C4—O3—C5—C2 | 34.96 (16) |
| C3—O1—C1—C6 | −107.53 (14) | O2—C2—C5—O3 | 99.37 (16) |
| C1—O2—C2—C5 | −88.63 (16) | C3—C2—C5—O3 | −14.97 (16) |
| C1—O2—C2—C3 | 25.58 (15) | O1—C3—C8—C9 | 62.51 (16) |
| C1—O1—C3—C8 | −122.93 (13) | C4—C3—C8—C9 | −175.42 (12) |
| C1—O1—C3—C4 | 111.46 (14) | C2—C3—C8—C9 | −55.00 (17) |
| C1—O1—C3—C2 | 2.43 (14) | O1—C3—C8—C13 | −61.44 (16) |
| O2—C2—C3—O1 | −16.78 (14) | C4—C3—C8—C13 | 60.62 (17) |
| C5—C2—C3—O1 | 104.03 (13) | C2—C3—C8—C13 | −178.95 (12) |
| O2—C2—C3—C8 | 104.51 (14) | C3—C8—C9—C10 | 178.09 (12) |
| C5—C2—C3—C8 | −134.68 (14) | C13—C8—C9—C10 | −57.09 (17) |
| O2—C2—C3—C4 | −129.38 (12) | C8—C9—C10—C11 | 56.64 (19) |
| C5—C2—C3—C4 | −8.57 (15) | C9—C10—C11—C12 | −54.5 (2) |
| C5—O3—C4—O4 | 77.45 (16) | C10—C11—C12—C13 | 53.94 (19) |
| C5—O3—C4—C3 | −40.52 (15) | C11—C12—C13—C8 | −55.52 (18) |
| O1—C3—C4—O4 | 161.44 (12) | C9—C8—C13—C12 | 56.55 (17) |
| C8—C3—C4—O4 | 38.13 (18) | C3—C8—C13—C12 | −177.46 (12) |
| H··· | ||||
| O4—H40···O3i | 0.84 | 1.95 | 2.787 (2) | 173 |
| C2—H2···O1ii | 1.00 | 2.43 | 3.350 (3) | 152 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O4—H40⋯O3i | 0.84 | 1.95 | 2.787 (2) | 173 |
| C2—H2⋯O1ii | 1.00 | 2.43 | 3.350 (3) | 152 |
Symmetry codes: (i) ; (ii) .