Literature DB >> 21578847

2-C-Cyclo-hexyl-2,3-O-isopropyl-idene-erythrofuran-ose.

Tony V Robinson, Dennis K Taylor, Edward R T Tiekink.   

Abstract

In the title compound, C(13)H(22)O(4), the acetonide ring adopts an envelope conformation with one of the O atoms as the flap atom, whereas a twisted conformation is found for the furan-ose ring. Centrosymmetric eight-membered {⋯OCOH}(2) synthons involving the hydr-oxy H and acetonide O atoms are found in the crystal structure. These are linked into a supra-molecular chain in the a-axis direction via C-H⋯O contacts.

Entities:  

Year:  2009        PMID: 21578847      PMCID: PMC2972000          DOI: 10.1107/S1600536809048557

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the dihydroxy­lation of the olefin portion of 1,2-dioxines, see: Robinson et al. (2006 ▶, 2009 ▶); Valente et al. (2009 ▶); Pedersen et al. (2009 ▶).

Experimental

Crystal data

C13H22O4 M = 242.31 Triclinic, a = 5.454 (3) Å b = 9.908 (3) Å c = 12.442 (5) Å α = 93.29 (3)° β = 94.95 (4)° γ = 102.94 (3)° V = 650.8 (5) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 153 K 0.24 × 0.15 × 0.13 mm

Data collection

Rigaku AFC12K/SATURN724 diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.789, T max = 1 4992 measured reflections 2224 independent reflections 2064 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.124 S = 1.09 2224 reflections 156 parameters 1 restraint H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809048557/hg2594sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809048557/hg2594Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H22O4Z = 2
Mr = 242.31F(000) = 264
Triclinic, P1Dx = 1.237 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.454 (3) ÅCell parameters from 657 reflections
b = 9.908 (3) Åθ = 2.1–30.2°
c = 12.442 (5) ŵ = 0.09 mm1
α = 93.29 (3)°T = 153 K
β = 94.95 (4)°Needle, colourless
γ = 102.94 (3)°0.24 × 0.15 × 0.13 mm
V = 650.8 (5) Å3
Rigaku AFC12K/SATURN724 diffractometer2224 independent reflections
Radiation source: fine-focus sealed tube2064 reflections with I > 2σ(I)
graphiteRint = 0.020
ω scansθmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −6→5
Tmin = 0.789, Tmax = 1k = −11→11
4992 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.066P)2 + 0.1734P] where P = (Fo2 + 2Fc2)/3
2224 reflections(Δ/σ)max < 0.001
156 parametersΔρmax = 0.18 e Å3
1 restraintΔρmin = −0.20 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.69690 (18)0.26256 (11)0.70713 (8)0.0281 (3)
O21.0523 (2)0.34466 (12)0.62499 (9)0.0352 (3)
O30.9937 (2)0.48884 (11)0.85907 (9)0.0377 (3)
O41.0310 (3)0.31604 (12)0.97416 (9)0.0439 (4)
H4O1.02810.37031.02820.066*
C10.7854 (3)0.33328 (17)0.61509 (12)0.0312 (4)
C21.1367 (3)0.33878 (16)0.73567 (13)0.0320 (4)
H21.27830.28980.74250.038*
C30.9031 (3)0.25734 (15)0.78511 (12)0.0270 (4)
C40.8885 (3)0.35109 (16)0.88634 (12)0.0327 (4)
H40.70880.34150.90190.039*
C51.2089 (3)0.47939 (18)0.80110 (15)0.0410 (4)
H5A1.36090.48530.85240.049*
H5B1.24500.55560.75260.049*
C60.7237 (3)0.47484 (18)0.61632 (14)0.0366 (4)
H6A0.53970.46370.60850.055*
H6B0.79590.52430.55620.055*
H6C0.79540.52820.68500.055*
C70.6697 (4)0.2440 (2)0.51267 (14)0.0446 (5)
H7A0.48500.22780.50850.067*
H7B0.71930.15490.51340.067*
H7C0.72990.29160.44970.067*
C80.9010 (3)0.10690 (15)0.80714 (12)0.0281 (4)
H81.04540.10860.86290.034*
C90.9368 (3)0.01889 (16)0.70736 (14)0.0353 (4)
H9A0.79680.01590.65040.042*
H9B1.09730.06230.67880.042*
C100.9421 (3)−0.12889 (17)0.73441 (16)0.0410 (4)
H10A0.9581−0.18440.66770.049*
H10B1.0915−0.12650.78630.049*
C110.7028 (3)−0.19803 (17)0.78331 (14)0.0363 (4)
H11A0.5557−0.21170.72800.044*
H11B0.7179−0.29050.80530.044*
C120.6588 (3)−0.11062 (17)0.88099 (14)0.0376 (4)
H12A0.7936−0.10830.94020.045*
H12B0.4948−0.15390.90670.045*
C130.6576 (3)0.03762 (17)0.85399 (13)0.0343 (4)
H13A0.63910.09290.92040.041*
H13B0.51070.03610.80100.041*
U11U22U33U12U13U23
O10.0218 (5)0.0379 (6)0.0252 (6)0.0082 (4)0.0014 (4)0.0048 (4)
O20.0277 (6)0.0454 (7)0.0345 (6)0.0098 (5)0.0089 (5)0.0062 (5)
O30.0485 (7)0.0307 (6)0.0335 (7)0.0112 (5)−0.0019 (5)−0.0002 (5)
O40.0662 (8)0.0383 (7)0.0279 (6)0.0212 (6)−0.0115 (6)−0.0033 (5)
C10.0266 (8)0.0414 (9)0.0262 (8)0.0078 (6)0.0047 (6)0.0051 (6)
C20.0240 (8)0.0352 (8)0.0373 (9)0.0082 (6)0.0009 (6)0.0041 (7)
C30.0234 (7)0.0332 (8)0.0250 (8)0.0095 (6)−0.0009 (6)−0.0001 (6)
C40.0413 (9)0.0312 (8)0.0264 (8)0.0125 (7)−0.0015 (7)0.0008 (6)
C50.0334 (9)0.0370 (9)0.0483 (10)0.0027 (7)−0.0044 (7)0.0023 (8)
C60.0343 (9)0.0440 (10)0.0337 (9)0.0121 (7)0.0037 (7)0.0100 (7)
C70.0490 (11)0.0548 (11)0.0272 (9)0.0082 (8)−0.0003 (8)0.0005 (8)
C80.0260 (8)0.0313 (8)0.0272 (8)0.0084 (6)0.0005 (6)0.0000 (6)
C90.0347 (9)0.0351 (9)0.0373 (9)0.0079 (7)0.0124 (7)−0.0006 (7)
C100.0407 (10)0.0329 (9)0.0506 (11)0.0097 (7)0.0137 (8)−0.0047 (7)
C110.0380 (9)0.0314 (8)0.0378 (9)0.0050 (7)0.0042 (7)−0.0006 (7)
C120.0432 (10)0.0365 (9)0.0340 (9)0.0088 (7)0.0070 (7)0.0061 (7)
C130.0369 (9)0.0369 (9)0.0319 (9)0.0119 (7)0.0107 (7)0.0027 (7)
O1—C31.4328 (18)C7—H7A0.9800
O1—C11.4392 (19)C7—H7B0.9800
O2—C21.423 (2)C7—H7C0.9800
O2—C11.429 (2)C8—C91.528 (2)
O3—C41.429 (2)C8—C131.531 (2)
O3—C51.447 (2)C8—H81.0000
O4—C41.392 (2)C9—C101.527 (2)
O4—H4O0.8399C9—H9A0.9900
C1—C71.512 (2)C9—H9B0.9900
C1—C61.513 (2)C10—C111.526 (2)
C2—C51.526 (2)C10—H10A0.9900
C2—C31.544 (2)C10—H10B0.9900
C2—H21.0000C11—C121.519 (2)
C3—C81.529 (2)C11—H11A0.9900
C3—C41.540 (2)C11—H11B0.9900
C4—H41.0000C12—C131.527 (2)
C5—H5A0.9900C12—H12A0.9900
C5—H5B0.9900C12—H12B0.9900
C6—H6A0.9800C13—H13A0.9900
C6—H6B0.9800C13—H13B0.9900
C6—H6C0.9800
C3—O1—C1111.24 (11)C1—C7—H7B109.5
C2—O2—C1108.79 (12)H7A—C7—H7B109.5
C4—O3—C5105.95 (12)C1—C7—H7C109.5
C4—O4—H4O108.8H7A—C7—H7C109.5
O2—C1—O1105.26 (12)H7B—C7—H7C109.5
O2—C1—C7108.62 (14)C9—C8—C3113.25 (13)
O1—C1—C7109.15 (13)C9—C8—C13109.62 (13)
O2—C1—C6111.35 (13)C3—C8—C13111.20 (12)
O1—C1—C6110.47 (13)C9—C8—H8107.5
C7—C1—C6111.76 (14)C3—C8—H8107.5
O2—C2—C5114.39 (14)C13—C8—H8107.5
O2—C2—C3104.95 (12)C10—C9—C8111.22 (14)
C5—C2—C3104.74 (13)C10—C9—H9A109.4
O2—C2—H2110.8C8—C9—H9A109.4
C5—C2—H2110.8C10—C9—H9B109.4
C3—C2—H2110.8C8—C9—H9B109.4
O1—C3—C8110.40 (12)H9A—C9—H9B108.0
O1—C3—C4108.10 (12)C11—C10—C9111.32 (14)
C8—C3—C4114.24 (13)C11—C10—H10A109.4
O1—C3—C2103.39 (12)C9—C10—H10A109.4
C8—C3—C2116.55 (12)C11—C10—H10B109.4
C4—C3—C2103.27 (12)C9—C10—H10B109.4
O4—C4—O3111.08 (13)H10A—C10—H10B108.0
O4—C4—C3109.45 (12)C12—C11—C10111.32 (14)
O3—C4—C3104.59 (13)C12—C11—H11A109.4
O4—C4—H4110.5C10—C11—H11A109.4
O3—C4—H4110.5C12—C11—H11B109.4
C3—C4—H4110.5C10—C11—H11B109.4
O3—C5—C2106.01 (13)H11A—C11—H11B108.0
O3—C5—H5A110.5C11—C12—C13111.60 (14)
C2—C5—H5A110.5C11—C12—H12A109.3
O3—C5—H5B110.5C13—C12—H12A109.3
C2—C5—H5B110.5C11—C12—H12B109.3
H5A—C5—H5B108.7C13—C12—H12B109.3
C1—C6—H6A109.5H12A—C12—H12B108.0
C1—C6—H6B109.5C12—C13—C8111.60 (13)
H6A—C6—H6B109.5C12—C13—H13A109.3
C1—C6—H6C109.5C8—C13—H13A109.3
H6A—C6—H6C109.5C12—C13—H13B109.3
H6B—C6—H6C109.5C8—C13—H13B109.3
C1—C7—H7A109.5H13A—C13—H13B108.0
C2—O2—C1—O1−24.16 (15)C2—C3—C4—O4−89.45 (15)
C2—O2—C1—C7−140.95 (13)O1—C3—C4—O3−79.48 (14)
C2—O2—C1—C695.56 (15)C8—C3—C4—O3157.20 (12)
C3—O1—C1—O212.78 (15)C2—C3—C4—O329.63 (14)
C3—O1—C1—C7129.21 (14)C4—O3—C5—C234.96 (16)
C3—O1—C1—C6−107.53 (14)O2—C2—C5—O399.37 (16)
C1—O2—C2—C5−88.63 (16)C3—C2—C5—O3−14.97 (16)
C1—O2—C2—C325.58 (15)O1—C3—C8—C962.51 (16)
C1—O1—C3—C8−122.93 (13)C4—C3—C8—C9−175.42 (12)
C1—O1—C3—C4111.46 (14)C2—C3—C8—C9−55.00 (17)
C1—O1—C3—C22.43 (14)O1—C3—C8—C13−61.44 (16)
O2—C2—C3—O1−16.78 (14)C4—C3—C8—C1360.62 (17)
C5—C2—C3—O1104.03 (13)C2—C3—C8—C13−178.95 (12)
O2—C2—C3—C8104.51 (14)C3—C8—C9—C10178.09 (12)
C5—C2—C3—C8−134.68 (14)C13—C8—C9—C10−57.09 (17)
O2—C2—C3—C4−129.38 (12)C8—C9—C10—C1156.64 (19)
C5—C2—C3—C4−8.57 (15)C9—C10—C11—C12−54.5 (2)
C5—O3—C4—O477.45 (16)C10—C11—C12—C1353.94 (19)
C5—O3—C4—C3−40.52 (15)C11—C12—C13—C8−55.52 (18)
O1—C3—C4—O4161.44 (12)C9—C8—C13—C1256.55 (17)
C8—C3—C4—O438.13 (18)C3—C8—C13—C12−177.46 (12)
D—H···AD—HH···AD···AD—H···A
O4—H40···O3i0.841.952.787 (2)173
C2—H2···O1ii1.002.433.350 (3)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O4—H40⋯O3i 0.841.952.787 (2)173
C2—H2⋯O1ii 1.002.433.350 (3)152

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Osmium catalyzed dihydroxylation of 1,2-dioxines: a new entry for stereoselective sugar synthesis.

Authors:  Tony V Robinson; Dennis K Taylor; Edward R T Tiekink
Journal:  J Org Chem       Date:  2006-09-15       Impact factor: 4.354

3.  A concise route to branched erythrono-gamma-lactones. Synthesis of the leaf-closing substance potassium (+/-)-(2R,3R)-2,3,4-trihydroxy-2-methylbutanoate.

Authors:  Daniel Sejer Pedersen; Tony V Robinson; Dennis K Taylor; Edward R T Tiekink
Journal:  J Org Chem       Date:  2009-06-05       Impact factor: 4.354

4.  Synthesis and chemistry of 2,3-dioxabicyclo[2.2.2]octane-5,6-diols.

Authors:  Peter Valente; Thomas D Avery; Dennis K Taylor; Edward R T Tiekink
Journal:  J Org Chem       Date:  2009-01-02       Impact factor: 4.354

5.  Dihydroxylation of 4-substituted 1,2-dioxines: a concise route to branched erythro sugars.

Authors:  Tony V Robinson; Daniel Sejer Pedersen; Dennis K Taylor; Edward R T Tiekink
Journal:  J Org Chem       Date:  2009-07-17       Impact factor: 4.354

  5 in total

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