Literature DB >> 21578826

6-(4-Fluoro-pheneth-yl)-7-imino-3-phenyl-2,3,6,7-tetra-hydro-1,3-thia-zolo[4,5-d]pyrimidine-2-thione.

Ying Liang, Hong-Wu He, Zi-Wen Yang.   

Abstract

In the title compound, C(19)H(15)FN(4)S(2), the mean plane of the thia-zolopyrimidine makes a dihedral angle of 77.6 (1)° with the attached phenyl ring. The crystal packing is stabilized by inter-molecular C-H⋯N hydrogen bonds and weak C-H-π stacking inter-actions.

Entities:  

Year:  2009        PMID: 21578826      PMCID: PMC2971921          DOI: 10.1107/S1600536809047576

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thia­zolo[4,5-d]pyrimidine deriv­atives, see: Balkan et al. (2002 ▶); Bekhit et al. (2003 ▶); Danel et al. (1998 ▶); Fahmy et al. (2003 ▶). For the synthesis of thia­zolo [4,5-d]pyrimidines via tandem aza-Wittig and cyclization reactions of imino­phospho­rane and alkyl­amines, see: Liang et al. (2007 ▶). For C—H⋯π inter­actions, see: Janiak (2000 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C19H15FN4S2 M = 382.47 Monoclinic, a = 8.6449 (13) Å b = 12.3780 (19) Å c = 16.546 (3) Å β = 91.531 (3)° V = 1769.9 (5) Å3 Z = 4 Mo Kα radiation μ = 0.32 mm−1 T = 298 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.910, T max = 0.939 13207 measured reflections 4047 independent reflections 3442 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.119 S = 1.05 4047 reflections 238 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809047576/jh2113sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809047576/jh2113Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H15FN4S2F(000) = 792
Mr = 382.47Dx = 1.435 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 8.6449 (13) ÅCell parameters from 5242 reflections
b = 12.3780 (19) Åθ = 2.5–27.9°
c = 16.546 (3) ŵ = 0.32 mm1
β = 91.531 (3)°T = 298 K
V = 1769.9 (5) Å3Block, colorless
Z = 40.30 × 0.20 × 0.20 mm
Bruker SMART APEX CCD area-detector diffractometer4047 independent reflections
Radiation source: fine-focus sealed tube3442 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 27.5°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −11→11
Tmin = 0.910, Tmax = 0.939k = −15→16
13207 measured reflectionsl = −20→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.063P)2 + 0.3948P] where P = (Fo2 + 2Fc2)/3
4047 reflections(Δ/σ)max = 0.001
238 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4958 (2)1.34258 (14)0.58804 (13)0.0535 (5)
C20.4537 (2)1.33892 (14)0.50835 (13)0.0542 (5)
H20.48631.39170.47260.065*
C30.3607 (2)1.25414 (15)0.48189 (11)0.0502 (4)
H30.33061.25030.42760.060*
C40.31153 (19)1.17484 (13)0.53462 (11)0.0429 (4)
C50.3617 (2)1.18055 (15)0.61453 (11)0.0504 (4)
H50.33351.12650.65030.060*
C60.4530 (2)1.26536 (16)0.64208 (12)0.0572 (5)
H60.48461.26970.69610.069*
C70.2083 (2)1.08369 (14)0.50454 (11)0.0482 (4)
H7A0.12031.11330.47450.058*
H7B0.16961.04390.55030.058*
C80.29661 (19)1.00780 (14)0.45073 (12)0.0467 (4)
H8A0.34501.04960.40870.056*
H8B0.37820.97320.48270.056*
C90.10871 (19)0.95138 (14)0.34270 (10)0.0422 (4)
C100.03504 (19)0.85689 (13)0.30865 (10)0.0411 (4)
C110.04789 (18)0.75959 (13)0.34560 (9)0.0379 (3)
C120.1989 (2)0.82329 (14)0.44484 (11)0.0458 (4)
H120.25670.81350.49250.055*
C13−0.0990 (2)0.70793 (14)0.23294 (10)0.0445 (4)
C14−0.02508 (18)0.56612 (13)0.33171 (10)0.0402 (4)
C150.0719 (3)0.49373 (17)0.29640 (13)0.0621 (5)
H150.13410.51460.25410.075*
C160.0753 (3)0.38912 (19)0.32496 (16)0.0780 (7)
H160.13980.33860.30140.094*
C17−0.0147 (3)0.35897 (17)0.38718 (18)0.0776 (8)
H17−0.01160.28810.40580.093*
C18−0.1101 (3)0.4326 (2)0.42259 (16)0.0739 (7)
H18−0.17110.41170.46530.089*
C19−0.1156 (2)0.53768 (16)0.39494 (12)0.0554 (5)
H19−0.17960.58820.41880.066*
N10.19862 (15)0.92398 (11)0.41267 (8)0.0411 (3)
N20.12708 (17)0.73932 (11)0.41615 (9)0.0459 (3)
N30.1072 (2)1.04959 (13)0.31970 (11)0.0605 (4)
H3A0.052 (3)1.0564 (19)0.2764 (15)0.073*
N4−0.02702 (16)0.67676 (11)0.30352 (8)0.0397 (3)
F10.58230 (17)1.42773 (10)0.61527 (9)0.0823 (4)
S1−0.07386 (6)0.84673 (4)0.21932 (3)0.05356 (16)
S2−0.19713 (7)0.63041 (4)0.16868 (3)0.06299 (18)
U11U22U33U12U13U23
C10.0557 (10)0.0390 (9)0.0653 (12)−0.0015 (7)−0.0051 (9)−0.0124 (8)
C20.0649 (11)0.0400 (9)0.0579 (12)−0.0030 (8)0.0053 (9)0.0022 (8)
C30.0616 (11)0.0468 (10)0.0418 (9)0.0013 (8)−0.0036 (8)−0.0013 (7)
C40.0455 (9)0.0374 (8)0.0457 (9)0.0022 (7)0.0017 (7)−0.0069 (7)
C50.0657 (11)0.0424 (9)0.0431 (10)0.0013 (8)0.0027 (8)−0.0003 (7)
C60.0738 (13)0.0516 (11)0.0456 (10)0.0017 (9)−0.0113 (9)−0.0088 (8)
C70.0463 (9)0.0461 (9)0.0523 (10)−0.0049 (7)0.0040 (8)−0.0077 (8)
C80.0384 (8)0.0437 (9)0.0576 (11)−0.0028 (7)−0.0038 (7)−0.0108 (8)
C90.0456 (9)0.0420 (9)0.0391 (8)−0.0044 (7)0.0005 (7)0.0010 (7)
C100.0478 (9)0.0415 (8)0.0337 (8)−0.0036 (7)−0.0048 (7)0.0028 (6)
C110.0403 (8)0.0388 (8)0.0344 (8)−0.0022 (6)−0.0019 (6)−0.0006 (6)
C120.0493 (9)0.0426 (9)0.0448 (10)0.0028 (7)−0.0131 (7)−0.0014 (7)
C130.0541 (10)0.0429 (9)0.0361 (8)−0.0027 (7)−0.0056 (7)0.0005 (7)
C140.0455 (8)0.0356 (8)0.0390 (8)−0.0024 (6)−0.0096 (7)−0.0015 (6)
C150.0763 (14)0.0584 (12)0.0516 (11)0.0159 (10)0.0021 (10)−0.0024 (9)
C160.1057 (19)0.0501 (12)0.0772 (16)0.0275 (12)−0.0187 (14)−0.0099 (11)
C170.0875 (16)0.0422 (11)0.101 (2)−0.0070 (11)−0.0404 (15)0.0170 (11)
C180.0622 (12)0.0699 (15)0.0891 (17)−0.0130 (11)−0.0077 (11)0.0346 (13)
C190.0493 (10)0.0549 (11)0.0621 (12)0.0020 (8)0.0031 (8)0.0128 (9)
N10.0389 (7)0.0388 (7)0.0453 (8)−0.0018 (5)−0.0053 (6)−0.0052 (6)
N20.0560 (8)0.0401 (7)0.0409 (8)−0.0006 (6)−0.0147 (6)0.0024 (6)
N30.0840 (12)0.0420 (8)0.0547 (10)−0.0113 (8)−0.0114 (9)0.0082 (7)
N40.0479 (7)0.0373 (7)0.0335 (7)−0.0034 (5)−0.0060 (5)0.0010 (5)
F10.0964 (10)0.0541 (7)0.0954 (10)−0.0209 (7)−0.0147 (8)−0.0206 (7)
S10.0767 (3)0.0453 (3)0.0377 (3)−0.0082 (2)−0.0170 (2)0.00820 (18)
S20.0860 (4)0.0531 (3)0.0483 (3)−0.0078 (2)−0.0276 (3)−0.0050 (2)
C1—C21.359 (3)C10—S11.7356 (16)
C1—F11.362 (2)C11—N21.361 (2)
C1—C61.367 (3)C11—N41.390 (2)
C2—C31.386 (3)C12—N21.294 (2)
C2—H20.9300C12—N11.355 (2)
C3—C41.387 (3)C12—H120.9300
C3—H30.9300C13—N41.364 (2)
C4—C51.382 (2)C13—S21.6501 (17)
C4—C71.515 (2)C13—S11.7472 (18)
C5—C61.384 (3)C14—C151.369 (3)
C5—H50.9300C14—C191.369 (3)
C6—H60.9300C14—N41.447 (2)
C7—C81.515 (2)C15—C161.378 (3)
C7—H7A0.9700C15—H150.9300
C7—H7B0.9700C16—C171.359 (4)
C8—N11.470 (2)C16—H160.9300
C8—H8A0.9700C17—C181.371 (4)
C8—H8B0.9700C17—H170.9300
C9—N31.274 (2)C18—C191.379 (3)
C9—N11.418 (2)C18—H180.9300
C9—C101.439 (2)C19—H190.9300
C10—C111.354 (2)N3—H3A0.86 (2)
C2—C1—F1118.50 (18)C10—C11—N2125.78 (15)
C2—C1—C6122.77 (17)C10—C11—N4113.49 (14)
F1—C1—C6118.72 (18)N2—C11—N4120.72 (14)
C1—C2—C3118.01 (18)N2—C12—N1126.76 (15)
C1—C2—H2121.0N2—C12—H12116.6
C3—C2—H2121.0N1—C12—H12116.6
C2—C3—C4121.47 (17)N4—C13—S2127.02 (13)
C2—C3—H3119.3N4—C13—S1109.46 (12)
C4—C3—H3119.3S2—C13—S1123.52 (10)
C5—C4—C3118.15 (16)C15—C14—C19121.81 (18)
C5—C4—C7121.30 (16)C15—C14—N4118.95 (17)
C3—C4—C7120.54 (16)C19—C14—N4119.19 (15)
C4—C5—C6121.04 (18)C14—C15—C16118.4 (2)
C4—C5—H5119.5C14—C15—H15120.8
C6—C5—H5119.5C16—C15—H15120.8
C1—C6—C5118.50 (18)C17—C16—C15120.7 (2)
C1—C6—H6120.7C17—C16—H16119.7
C5—C6—H6120.7C15—C16—H16119.7
C4—C7—C8110.67 (14)C16—C17—C18120.3 (2)
C4—C7—H7A109.5C16—C17—H17119.9
C8—C7—H7A109.5C18—C17—H17119.9
C4—C7—H7B109.5C17—C18—C19120.1 (2)
C8—C7—H7B109.5C17—C18—H18120.0
H7A—C7—H7B108.1C19—C18—H18120.0
N1—C8—C7113.30 (14)C14—C19—C18118.7 (2)
N1—C8—H8A108.9C14—C19—H19120.6
C7—C8—H8A108.9C18—C19—H19120.6
N1—C8—H8B108.9C12—N1—C9122.40 (13)
C7—C8—H8B108.9C12—N1—C8119.05 (14)
H8A—C8—H8B107.7C9—N1—C8118.54 (14)
N3—C9—N1118.24 (15)C12—N2—C11113.08 (14)
N3—C9—C10131.12 (16)C9—N3—H3A110.2 (16)
N1—C9—C10110.63 (14)C13—N4—C11114.58 (13)
C11—C10—C9121.06 (15)C13—N4—C14123.01 (13)
C11—C10—S1110.87 (12)C11—N4—C14122.39 (12)
C9—C10—S1128.06 (12)C10—S1—C1391.60 (8)
F1—C1—C2—C3−177.55 (17)C17—C18—C19—C140.3 (3)
C6—C1—C2—C31.4 (3)N2—C12—N1—C93.5 (3)
C1—C2—C3—C4−0.1 (3)N2—C12—N1—C8−175.59 (17)
C2—C3—C4—C5−1.9 (3)N3—C9—N1—C12175.35 (18)
C2—C3—C4—C7179.23 (16)C10—C9—N1—C12−5.8 (2)
C3—C4—C5—C62.7 (3)N3—C9—N1—C8−5.6 (2)
C7—C4—C5—C6−178.48 (17)C10—C9—N1—C8173.26 (14)
C2—C1—C6—C5−0.7 (3)C7—C8—N1—C12−100.26 (19)
F1—C1—C6—C5178.28 (18)C7—C8—N1—C980.6 (2)
C4—C5—C6—C1−1.4 (3)N1—C12—N2—C111.3 (3)
C5—C4—C7—C8−109.01 (19)C10—C11—N2—C12−3.2 (3)
C3—C4—C7—C869.8 (2)N4—C11—N2—C12175.53 (15)
C4—C7—C8—N1−173.93 (15)S2—C13—N4—C11179.73 (13)
N3—C9—C10—C11−177.3 (2)S1—C13—N4—C11−0.73 (19)
N1—C9—C10—C114.0 (2)S2—C13—N4—C141.2 (3)
N3—C9—C10—S14.0 (3)S1—C13—N4—C14−179.28 (13)
N1—C9—C10—S1−174.59 (13)C10—C11—N4—C130.2 (2)
C9—C10—C11—N20.3 (3)N2—C11—N4—C13−178.63 (15)
S1—C10—C11—N2179.18 (14)C10—C11—N4—C14178.81 (15)
C9—C10—C11—N4−178.47 (15)N2—C11—N4—C14−0.1 (2)
S1—C10—C11—N40.37 (19)C15—C14—N4—C1376.3 (2)
C19—C14—C15—C161.2 (3)C19—C14—N4—C13−106.2 (2)
N4—C14—C15—C16178.58 (18)C15—C14—N4—C11−102.1 (2)
C14—C15—C16—C17−0.5 (4)C19—C14—N4—C1175.4 (2)
C15—C16—C17—C18−0.2 (4)C11—C10—S1—C13−0.66 (14)
C16—C17—C18—C190.3 (4)C9—C10—S1—C13178.08 (17)
C15—C14—C19—C18−1.1 (3)N4—C13—S1—C100.78 (14)
N4—C14—C19—C18−178.46 (17)S2—C13—S1—C10−179.66 (13)
D—H···AD—HH···AD···AD—H···A
C15—H15···N3i0.932.613.486 (3)156
C19—H19···Cg3ii0.932.743.637 (2)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C15—H15⋯N3i 0.932.613.486 (3)156
C19—H19⋯Cg3ii 0.932.743.637 (2)161

Symmetry codes: (i) ; (ii) . Cg3 is the centroid of the C1–C6 ring.

  3 in total

1.  Evaluation of the analgesic and anti-inflammatory activities of some thiazolo[4,5-d]pyrimidines.

Authors:  Ayla Balkan; Zafer Gören; Hüsne Urgun; Unsal Caliş; A Nur Cakar; Pergin Atilla; Tayfun Uzbay
Journal:  Arzneimittelforschung       Date:  2002

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and anti-HIV-1 activity of novel 2,3-dihydro-7H-thiazolo[3,2-a]pyrimidin-7-ones.

Authors:  K Danel; E B Pedersen; C Nielsen
Journal:  J Med Chem       Date:  1998-01-15       Impact factor: 7.446

  3 in total

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