Literature DB >> 21578817

meso-4,5-Diphenyl-imidazolidin-2-one.

Henry Galas, Russell D Viirre, Alan J Lough.   

Abstract

The crystal structure determination of the title compound, C(15)H(14)N(2)O, confirms the cis relationship between the phenyl groups at the 4- and 5-positions on the imidazolidine ring. The dihedral angle between the two phenyl rings is 48.14 (6)°. In the crystal structure, inter-molecular N-H⋯O hydrogen bonds link mol-ecules into centrosymmetric dimers. These dimers are, in turn, linked into a two-dimensional network via weak N-H⋯π(arene) inter-actions and π-π stacking inter-actions with centroid-centroid distances of 3.6937 (11) Å.

Entities:  

Year:  2009        PMID: 21578817      PMCID: PMC2971968          DOI: 10.1107/S1600536809046133

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the first synthesis of this compound, see: Biniecki & Moll (1974 ▶). For the synthesis of the trans-isomers, see: Sankhavasi et al. (1991 ▶). For the crystal structure of the (R,R)-isomer, see: Siegler & Long (2006 ▶). For the synthesis of the precursor, see: Proskurnina et al. (2002 ▶). For applications of related enanti­opure compounds, see: Sankhavasi et al. (1991 ▶); Isobe et al. (1998 ▶); Lou et al. (2004 ▶). For potential applications of the title compound, see: Porosa & Viirre (2009 ▶).

Experimental

Crystal data

C15H14N2O M = 238.28 Triclinic, a = 6.3539 (4) Å b = 8.6159 (4) Å c = 11.3211 (7) Å α = 86.147 (3)° β = 76.094 (3)° γ = 82.718 (3)° V = 596.32 (6) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.20 × 0.20 × 0.08 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1995 ▶) T min = 0.873, T max = 0.995 6535 measured reflections 2685 independent reflections 1771 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.156 S = 1.03 2685 reflections 172 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.25 e Å−3 Data collection: COLLECT (Nonius, 2002 ▶); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXTL (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809046133/sj2668sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809046133/sj2668Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H14N2OZ = 2
Mr = 238.28F(000) = 252
Triclinic, P1Dx = 1.327 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.3539 (4) ÅCell parameters from 6535 reflections
b = 8.6159 (4) Åθ = 3.0–27.5°
c = 11.3211 (7) ŵ = 0.09 mm1
α = 86.147 (3)°T = 150 K
β = 76.094 (3)°Plate, colourless
γ = 82.718 (3)°0.20 × 0.20 × 0.08 mm
V = 596.32 (6) Å3
Nonius KappaCCD diffractometer2685 independent reflections
Radiation source: fine-focus sealed tube1771 reflections with I > 2σ(I)
graphiteRint = 0.047
Detector resolution: 9 pixels mm-1θmax = 27.5°, θmin = 3.0°
ω scansh = −8→8
Absorption correction: multi-scan (SORTAV; Blessing, 1995)k = −11→11
Tmin = 0.873, Tmax = 0.995l = −12→14
6535 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.054H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.156w = 1/[σ2(Fo2) + (0.0787P)2 + 0.1078P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2685 reflectionsΔρmax = 0.25 e Å3
172 parametersΔρmin = −0.25 e Å3
0 restraintsExtinction correction: SHELXTL (Version 6.1; Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.043 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5277 (2)0.41749 (16)0.65182 (13)0.0402 (4)
N10.2254 (3)0.55213 (18)0.59441 (15)0.0298 (4)
N20.2105 (3)0.50802 (19)0.79050 (15)0.0310 (4)
C10.0274 (3)0.6470 (2)0.65473 (17)0.0264 (4)
H1A−0.09380.63280.61560.032*
C20.3394 (3)0.4852 (2)0.67556 (18)0.0308 (5)
C3−0.0134 (3)0.5630 (2)0.78442 (17)0.0283 (5)
H3A−0.09260.47010.78310.034*
C40.0525 (3)0.8203 (2)0.65330 (16)0.0243 (4)
C50.2551 (3)0.8742 (2)0.63592 (17)0.0288 (5)
H5A0.38290.80140.62670.035*
C60.2724 (3)1.0331 (2)0.63194 (18)0.0315 (5)
H6A0.41181.06870.61950.038*
C70.0879 (3)1.1399 (2)0.64589 (18)0.0318 (5)
H7A0.10041.24890.64300.038*
C8−0.1151 (3)1.0882 (2)0.66414 (17)0.0317 (5)
H8A−0.24261.16140.67410.038*
C9−0.1316 (3)0.9287 (2)0.66781 (17)0.0278 (5)
H9A−0.27130.89340.68050.033*
C10−0.1371 (3)0.6618 (2)0.88918 (16)0.0259 (4)
C11−0.0311 (3)0.7520 (2)0.94856 (17)0.0297 (5)
H11A0.12280.75140.92330.036*
C12−0.1480 (3)0.8430 (2)1.04446 (18)0.0338 (5)
H12A−0.07350.90301.08520.041*
C13−0.3712 (3)0.8468 (2)1.08089 (18)0.0339 (5)
H13A−0.45100.91031.14590.041*
C14−0.4787 (3)0.7580 (2)1.02265 (19)0.0364 (5)
H14A−0.63280.76031.04790.044*
C15−0.3626 (3)0.6652 (2)0.92714 (17)0.0307 (5)
H15A−0.43760.60390.88780.037*
H2N0.248 (3)0.441 (3)0.846 (2)0.035 (6)*
H1N0.297 (3)0.569 (2)0.514 (2)0.040 (6)*
U11U22U33U12U13U23
O10.0377 (9)0.0356 (8)0.0365 (9)0.0126 (7)0.0019 (7)0.0053 (6)
N10.0339 (10)0.0250 (8)0.0261 (9)0.0018 (7)−0.0011 (7)−0.0002 (7)
N20.0309 (10)0.0292 (9)0.0270 (9)0.0048 (7)−0.0014 (7)0.0069 (7)
C10.0257 (10)0.0249 (9)0.0265 (10)−0.0011 (8)−0.0025 (8)−0.0022 (8)
C20.0338 (12)0.0231 (10)0.0314 (11)0.0017 (8)−0.0030 (9)0.0025 (8)
C30.0265 (10)0.0236 (9)0.0324 (10)−0.0035 (8)−0.0019 (8)0.0000 (8)
C40.0262 (10)0.0269 (10)0.0189 (9)−0.0010 (8)−0.0048 (7)0.0006 (7)
C50.0279 (11)0.0279 (10)0.0299 (10)−0.0008 (8)−0.0070 (8)0.0013 (8)
C60.0328 (11)0.0335 (11)0.0296 (11)−0.0088 (9)−0.0077 (9)0.0003 (8)
C70.0420 (12)0.0253 (10)0.0270 (10)−0.0048 (9)−0.0056 (9)−0.0015 (8)
C80.0334 (12)0.0284 (10)0.0292 (11)0.0047 (9)−0.0041 (9)0.0001 (8)
C90.0245 (10)0.0302 (10)0.0275 (10)−0.0021 (8)−0.0047 (8)0.0006 (8)
C100.0262 (10)0.0227 (9)0.0259 (10)−0.0024 (8)−0.0026 (8)0.0057 (7)
C110.0269 (10)0.0310 (10)0.0296 (10)−0.0081 (8)−0.0017 (8)0.0013 (8)
C120.0444 (13)0.0292 (10)0.0277 (11)−0.0119 (9)−0.0045 (9)0.0012 (8)
C130.0402 (13)0.0303 (11)0.0258 (10)0.0024 (9)−0.0009 (9)0.0001 (8)
C140.0262 (11)0.0460 (13)0.0326 (11)0.0013 (9)−0.0024 (9)0.0032 (10)
C150.0288 (11)0.0336 (11)0.0288 (10)−0.0052 (8)−0.0047 (8)−0.0001 (8)
O1—C21.238 (2)C6—H6A0.9500
N1—C21.358 (3)C7—C81.382 (3)
N1—C11.456 (2)C7—H7A0.9500
N1—H1N0.93 (2)C8—C91.389 (3)
N2—C21.373 (3)C8—H8A0.9500
N2—C31.458 (3)C9—H9A0.9500
N2—H2N0.87 (2)C10—C111.389 (3)
C1—C41.520 (2)C10—C151.391 (3)
C1—C31.571 (3)C11—C121.387 (3)
C1—H1A1.0000C11—H11A0.9500
C3—C101.506 (3)C12—C131.375 (3)
C3—H3A1.0000C12—H12A0.9500
C4—C91.386 (3)C13—C141.380 (3)
C4—C51.389 (3)C13—H13A0.9500
C5—C61.384 (3)C14—C151.392 (3)
C5—H5A0.9500C14—H14A0.9500
C6—C71.379 (3)C15—H15A0.9500
C2—N1—C1111.46 (16)C5—C6—H6A119.9
C2—N1—H1N119.9 (13)C6—C7—C8119.96 (17)
C1—N1—H1N123.4 (13)C6—C7—H7A120.0
C2—N2—C3110.27 (16)C8—C7—H7A120.0
C2—N2—H2N113.6 (14)C7—C8—C9119.57 (18)
C3—N2—H2N124.9 (14)C7—C8—H8A120.2
N1—C1—C4113.60 (15)C9—C8—H8A120.2
N1—C1—C399.73 (14)C4—C9—C8121.04 (17)
C4—C1—C3114.88 (14)C4—C9—H9A119.5
N1—C1—H1A109.4C8—C9—H9A119.5
C4—C1—H1A109.4C11—C10—C15118.79 (18)
C3—C1—H1A109.4C11—C10—C3121.43 (17)
O1—C2—N1126.79 (18)C15—C10—C3119.77 (17)
O1—C2—N2125.27 (18)C12—C11—C10120.59 (18)
N1—C2—N2107.93 (17)C12—C11—H11A119.7
N2—C3—C10113.62 (16)C10—C11—H11A119.7
N2—C3—C1100.24 (14)C13—C12—C11120.32 (19)
C10—C3—C1116.28 (14)C13—C12—H12A119.8
N2—C3—H3A108.8C11—C12—H12A119.8
C10—C3—H3A108.8C12—C13—C14119.72 (19)
C1—C3—H3A108.8C12—C13—H13A120.1
C9—C4—C5118.61 (16)C14—C13—H13A120.1
C9—C4—C1119.26 (16)C13—C14—C15120.36 (19)
C5—C4—C1122.12 (16)C13—C14—H14A119.8
C6—C5—C4120.56 (18)C15—C14—H14A119.8
C6—C5—H5A119.7C10—C15—C14120.20 (18)
C4—C5—H5A119.7C10—C15—H15A119.9
C7—C6—C5120.26 (18)C14—C15—H15A119.9
C7—C6—H6A119.9
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.93 (2)1.94 (2)2.864 (2)173 (2)
N2—H2N···Cg1ii0.87 (2)2.46 (2)3.322 (2)165 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯O1i 0.93 (2)1.94 (2)2.864 (2)173 (2)
N2—H2NCg1ii 0.87 (2)2.46 (2)3.322 (2)165 (2)

Symmetry codes: (i) ; (ii) . Cg1 is the centroid of the C4–C9 ring.

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  [Condensation of meso-1,2-diphenylethylenediamine with phosgene, oxalyl chloride and malonyl chloride].

Authors:  M Moll; S Biniecki
Journal:  Acta Pol Pharm       Date:  1974       Impact factor: 0.330

3.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

4.  A new chiral Rh(II) catalyst for enantioselective [2 + 1]-cycloaddition. mechanistic implications and applications.

Authors:  Yan Lou; Manabu Horikawa; Robin A Kloster; Natalie A Hawryluk; E J Corey
Journal:  J Am Chem Soc       Date:  2004-07-28       Impact factor: 15.419

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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