Literature DB >> 21578786

1-(3-Pyrid-yl)pyrrolidine-2,5-dione.

Hong-Bo Hou1, Yi-Ming Liu, Luan-Fang Yang.   

Abstract

In the title mol-ecule, C(9)H(8)N(2)O(2), the dihedral angle between the pyridine and the pyrrolidine rings is 64.58 (12)°. In the crystal structure, weak C-H⋯π-electron ring inter-actions stabilize the packing.

Entities:  

Year:  2009        PMID: 21578786      PMCID: PMC2972032          DOI: 10.1107/S1600536809046522

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the pharmaceutical properties of pyrrolidine-2,5-dione derivatives, see: Procopiou et al. (1993 ▶); Obniska et al. (2009 ▶).

Experimental

Crystal data

C9H8N2O2 M = 176.17 Orthorhombic, a = 12.137 (8) Å b = 10.838 (6) Å c = 6.831 (4) Å V = 898.6 (9) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.25 × 0.21 × 0.17 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.977, T max = 0.984 3927 measured reflections 852 independent reflections 672 reflections with I > 2σ(I) R int = 0.073

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.069 S = 1.00 852 reflections 119 parameters 1 restraint H-atom parameters constrained Δρmax = 0.11 e Å−3 Δρmin = −0.10 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809046522/fb2172sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809046522/fb2172Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H8N2O2F(000) = 368
Mr = 176.17Dx = 1.302 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 852 reflections
a = 12.137 (8) Åθ = 2.5–25.0°
b = 10.838 (6) ŵ = 0.10 mm1
c = 6.831 (4) ÅT = 293 K
V = 898.6 (9) Å3Block, colourless
Z = 40.25 × 0.21 × 0.17 mm
Bruker SMART CCD area-detector diffractometer852 independent reflections
Radiation source: fine-focus sealed tube672 reflections with I > 2σ(I)
graphiteRint = 0.073
φ and ω scansθmax = 25.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −13→14
Tmin = 0.977, Tmax = 0.984k = −12→12
3927 measured reflectionsl = −8→7
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.069w = 1/[σ2(Fo2) + (0.0287P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
852 reflectionsΔρmax = 0.11 e Å3
119 parametersΔρmin = −0.10 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
32 constraintsExtinction coefficient: 0.128 (8)
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.46710 (19)0.76727 (18)0.7705 (4)0.0421 (6)
C20.5641 (2)0.7232 (2)0.8551 (4)0.0576 (8)
H20.58470.75450.97640.069*
C30.5975 (2)0.5948 (2)0.5932 (5)0.0653 (9)
H30.64080.53520.53270.078*
C40.5034 (2)0.6353 (2)0.4968 (4)0.0661 (8)
H40.48530.60400.37420.079*
C50.4364 (2)0.7235 (2)0.5857 (5)0.0563 (8)
H50.37310.75230.52400.068*
C60.34810 (18)0.8409 (2)1.0491 (4)0.0508 (7)
C70.29704 (19)0.9616 (2)1.1138 (4)0.0578 (8)
H7A0.32990.98971.23530.069*
H7B0.21830.95241.13280.069*
C80.3213 (2)1.0532 (2)0.9462 (5)0.0565 (8)
H8A0.25341.08230.88740.068*
H8B0.36251.12370.99430.068*
C90.38857 (18)0.9809 (2)0.8001 (5)0.0505 (7)
N10.62967 (18)0.63755 (19)0.7709 (4)0.0668 (7)
N20.40243 (14)0.86060 (15)0.8703 (3)0.0417 (5)
O10.34353 (16)0.74092 (18)1.1328 (4)0.0784 (7)
O20.42619 (16)1.01652 (17)0.6419 (4)0.0797 (7)
U11U22U33U12U13U23
C10.0410 (13)0.0403 (13)0.0449 (17)−0.0047 (10)−0.0005 (13)0.0029 (13)
C20.0566 (15)0.0605 (16)0.056 (2)0.0107 (12)−0.0101 (15)−0.0018 (14)
C30.0721 (19)0.0532 (16)0.071 (2)0.0082 (12)0.0108 (19)−0.0073 (16)
C40.0749 (18)0.0639 (17)0.060 (2)−0.0014 (15)−0.0085 (17)−0.0176 (14)
C50.0496 (15)0.0607 (17)0.059 (2)−0.0035 (12)−0.0103 (14)−0.0036 (15)
C60.0493 (14)0.0581 (16)0.0450 (19)−0.0032 (13)−0.0024 (13)0.0052 (15)
C70.0484 (13)0.0743 (17)0.051 (2)−0.0007 (13)0.0042 (16)−0.0066 (15)
C80.0445 (14)0.0513 (15)0.074 (2)0.0018 (12)0.0013 (14)−0.0083 (16)
C90.0395 (12)0.0501 (15)0.062 (2)−0.0033 (10)0.0001 (14)0.0065 (15)
N10.0668 (15)0.0652 (15)0.0684 (19)0.0207 (11)−0.0052 (15)−0.0076 (15)
N20.0380 (10)0.0427 (12)0.0445 (14)−0.0003 (8)−0.0008 (10)0.0044 (10)
O10.0992 (15)0.0735 (13)0.0624 (15)0.0008 (11)0.0115 (14)0.0195 (11)
O20.0846 (13)0.0681 (13)0.0864 (17)0.0147 (10)0.0343 (13)0.0302 (13)
C1—C21.396 (4)C6—O11.226 (3)
C1—C51.399 (4)C6—N21.404 (3)
C1—N21.450 (3)C6—C71.514 (4)
C2—N11.351 (3)C7—C81.544 (4)
C2—H20.9300C7—H7A0.9700
C3—N11.356 (4)C7—H7B0.9700
C3—C41.390 (4)C8—C91.509 (4)
C3—H30.9300C8—H8A0.9700
C4—C51.393 (4)C8—H8B0.9700
C4—H40.9300C9—O21.235 (4)
C5—H50.9300C9—N21.400 (3)
C2—C1—C5118.8 (2)C6—C7—H7A110.7
C2—C1—N2120.0 (3)C8—C7—H7A110.7
C5—C1—N2121.1 (2)C6—C7—H7B110.7
N1—C2—C1123.8 (3)C8—C7—H7B110.7
N1—C2—H2118.1H7A—C7—H7B108.8
C1—C2—H2118.1C9—C8—C7105.1 (2)
N1—C3—C4123.6 (3)C9—C8—H8A110.7
N1—C3—H3118.2C7—C8—H8A110.7
C4—C3—H3118.2C9—C8—H8B110.7
C3—C4—C5119.3 (3)C7—C8—H8B110.7
C3—C4—H4120.4H8A—C8—H8B108.8
C5—C4—H4120.4O2—C9—N2123.1 (2)
C4—C5—C1118.1 (3)O2—C9—C8128.1 (2)
C4—C5—H5121.0N2—C9—C8108.8 (3)
C1—C5—H5121.0C2—N1—C3116.5 (2)
O1—C6—N2124.2 (2)C9—N2—C6112.6 (2)
O1—C6—C7127.5 (3)C9—N2—C1123.6 (2)
N2—C6—C7108.3 (2)C6—N2—C1123.8 (2)
C6—C7—C8105.1 (2)
D—H···AD—HH···AD···AD—H···A
C8—H8B···Cgi0.972.783.742 (6)172
Table 1

Hydrogen-bond geometry (Å)

D—H⋯A D—HH⋯A DA D—H⋯A
C8—H8BCg i 0.972.783.742 (6)172

Symmetry code: (i) . Cg is the centroid of the N1,C1–C5 ring.

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and anticonvulsant activity of new N-[(4-arylpiperazin-1-yl)-alkyl] derivatives of 3-phenyl-pyrrolidine-2,5-dione.

Authors:  Jolanta Obniska; Krzysztof Kaminski; Dorota Skrzynska; Joanna Pichor
Journal:  Eur J Med Chem       Date:  2008-07-07       Impact factor: 6.514

3.  Inhibitors of cholesterol biosynthesis. 2. 3,5-Dihydroxy-7-(N-pyrrolyl)-6-heptenoates, a novel series of HMG-CoA reductase inhibitors.

Authors:  P A Procopiou; C D Draper; J L Hutson; G G Inglis; B C Ross; N S Watson
Journal:  J Med Chem       Date:  1993-11-12       Impact factor: 7.446

  3 in total

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