Literature DB >> 21578718

3-Hydr-oxy-N'-(5-hydr-oxy-2-nitro-benzyl-idene)-2-naphthohydrazide.

De-Suo Yang1.   

Abstract

The mol-ecule of the title compound, C(18)H(13)N(3)O(5), displays an E configuration with respect to the C=N double bond. The dihedral angle between the benzene ring and the naphthyl system is 1.1 (2)°. In the crystal structure, mol-ecules are linked through inter-molecular N-H⋯O and O-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2009        PMID: 21578718      PMCID: PMC2971756          DOI: 10.1107/S1600536809045279

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and structural chemistry of hydrazone compounds, see: Avaji et al. (2009 ▶); Charkoudian et al. (2007 ▶); Cukurovali et al. (2006 ▶). For related structures, see: Yang (2008a ▶,b ▶,c ▶,d ▶,e, 2007a ▶,b ▶,c ▶); Yang & Guo (2006 ▶).

Experimental

Crystal data

C18H13N3O5 M = 351.31 Monoclinic, a = 10.1588 (3) Å b = 8.2562 (2) Å c = 19.5268 (5) Å β = 104.867 (1)° V = 1582.95 (7) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.23 × 0.20 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.975, T max = 0.978 9168 measured reflections 3425 independent reflections 2436 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.119 S = 1.04 3425 reflections 241 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809045279/bh2256sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809045279/bh2256Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H13N3O5F(000) = 728
Mr = 351.31Dx = 1.474 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2463 reflections
a = 10.1588 (3) Åθ = 2.5–26.6°
b = 8.2562 (2) ŵ = 0.11 mm1
c = 19.5268 (5) ÅT = 298 K
β = 104.867 (1)°Block, colorless
V = 1582.95 (7) Å30.23 × 0.20 × 0.20 mm
Z = 4
Bruker SMART CCD diffractometer3425 independent reflections
Radiation source: fine-focus sealed tube2436 reflections with I > 2σ(I)
graphiteRint = 0.028
ω scansθmax = 27.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.975, Tmax = 0.978k = −10→10
9168 measured reflectionsl = −24→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0503P)2 + 0.3232P] where P = (Fo2 + 2Fc2)/3
3425 reflections(Δ/σ)max < 0.001
241 parametersΔρmax = 0.19 e Å3
1 restraintΔρmin = −0.19 e Å3
0 constraints
xyzUiso*/Ueq
N10.88109 (14)0.92607 (17)0.05530 (7)0.0462 (4)
N21.00455 (13)0.88709 (16)0.10140 (7)0.0446 (3)
N31.20940 (14)0.48961 (18)0.04801 (7)0.0461 (3)
O10.86564 (13)1.16125 (15)0.11112 (6)0.0575 (4)
O20.63397 (15)1.31345 (18)0.08033 (7)0.0689 (4)
H20.70841.28540.10520.103*
O31.13711 (14)0.56430 (16)−0.00173 (6)0.0612 (4)
O41.24674 (14)0.34954 (16)0.04217 (7)0.0695 (4)
O51.38574 (15)0.75885 (19)0.31532 (6)0.0721 (4)
H51.45650.71600.33770.108*
C10.69456 (16)1.10569 (19)0.00579 (8)0.0407 (4)
C20.60609 (17)1.2299 (2)0.01840 (9)0.0485 (4)
C30.49048 (18)1.2674 (3)−0.03235 (10)0.0601 (5)
H30.43321.3482−0.02340.072*
C40.45611 (17)1.1865 (3)−0.09781 (10)0.0582 (5)
C50.3359 (2)1.2237 (3)−0.15133 (13)0.0833 (8)
H5A0.27561.3013−0.14280.100*
C60.3090 (3)1.1465 (4)−0.21477 (15)0.1025 (11)
H60.22991.1717−0.24930.123*
C70.3980 (3)1.0294 (3)−0.22928 (13)0.1001 (10)
H70.37820.9787−0.27330.120*
C80.5134 (2)0.9896 (3)−0.17908 (11)0.0769 (7)
H80.57210.9116−0.18890.092*
C90.54456 (19)1.0664 (2)−0.11211 (9)0.0541 (5)
C100.66309 (18)1.0299 (2)−0.05915 (9)0.0477 (4)
H100.72240.9519−0.06830.057*
C110.81986 (16)1.06728 (19)0.06131 (8)0.0417 (4)
C121.04643 (17)0.7455 (2)0.09371 (9)0.0468 (4)
H120.99350.67740.05960.056*
C131.17752 (16)0.68736 (18)0.13789 (8)0.0398 (4)
C141.25482 (16)0.56598 (18)0.11681 (8)0.0381 (3)
C151.37767 (16)0.51385 (19)0.16009 (9)0.0429 (4)
H151.42760.43420.14430.051*
C161.42572 (16)0.5796 (2)0.22626 (8)0.0440 (4)
H161.50940.54710.25500.053*
C171.34847 (18)0.6951 (2)0.24990 (8)0.0466 (4)
C181.22688 (17)0.7487 (2)0.20549 (8)0.0481 (4)
H181.17720.82800.22160.058*
H10.8395 (18)0.8513 (19)0.0237 (8)0.066 (6)*
U11U22U33U12U13U23
N10.0433 (8)0.0423 (8)0.0426 (8)0.0066 (6)−0.0077 (6)−0.0034 (6)
N20.0416 (7)0.0449 (8)0.0399 (7)0.0064 (6)−0.0033 (6)0.0013 (6)
N30.0441 (8)0.0456 (8)0.0486 (8)−0.0067 (6)0.0117 (7)−0.0072 (7)
O10.0632 (8)0.0469 (7)0.0482 (7)0.0076 (6)−0.0119 (6)−0.0087 (6)
O20.0754 (10)0.0743 (10)0.0563 (8)0.0261 (8)0.0159 (7)−0.0026 (7)
O30.0687 (9)0.0642 (9)0.0433 (7)−0.0101 (7)0.0007 (6)−0.0002 (6)
O40.0683 (9)0.0559 (8)0.0786 (9)0.0076 (7)0.0085 (7)−0.0274 (7)
O50.0725 (10)0.0899 (11)0.0412 (7)0.0308 (8)−0.0088 (6)−0.0124 (7)
C10.0390 (8)0.0370 (8)0.0416 (8)−0.0019 (7)0.0022 (7)0.0075 (7)
C20.0475 (10)0.0517 (10)0.0469 (10)0.0047 (8)0.0133 (8)0.0101 (8)
C30.0431 (10)0.0710 (13)0.0687 (13)0.0150 (9)0.0189 (9)0.0243 (11)
C40.0378 (9)0.0711 (13)0.0591 (12)−0.0109 (9)0.0004 (8)0.0282 (10)
C50.0427 (11)0.1106 (19)0.0836 (16)−0.0086 (12)−0.0074 (11)0.0461 (15)
C60.0652 (15)0.120 (2)0.0910 (19)−0.0332 (16)−0.0366 (14)0.0452 (18)
C70.113 (2)0.0834 (18)0.0686 (15)−0.0412 (17)−0.0400 (15)0.0161 (13)
C80.0945 (16)0.0613 (13)0.0542 (12)−0.0199 (12)−0.0187 (11)0.0049 (10)
C90.0536 (11)0.0486 (10)0.0485 (10)−0.0154 (9)−0.0080 (8)0.0144 (8)
C100.0518 (10)0.0375 (8)0.0459 (9)−0.0020 (8)−0.0022 (8)0.0045 (7)
C110.0437 (9)0.0382 (8)0.0384 (8)0.0000 (7)0.0016 (7)0.0026 (7)
C120.0455 (9)0.0440 (9)0.0434 (9)0.0023 (8)−0.0022 (7)−0.0052 (7)
C130.0403 (8)0.0366 (8)0.0387 (8)0.0020 (7)0.0031 (7)0.0030 (7)
C140.0422 (8)0.0333 (8)0.0376 (8)−0.0044 (7)0.0082 (7)0.0001 (6)
C150.0438 (9)0.0363 (8)0.0497 (9)0.0043 (7)0.0141 (8)0.0035 (7)
C160.0409 (9)0.0443 (9)0.0430 (9)0.0060 (7)0.0038 (7)0.0090 (7)
C170.0506 (10)0.0494 (10)0.0350 (8)0.0053 (8)0.0022 (7)0.0009 (7)
C180.0499 (10)0.0462 (9)0.0436 (9)0.0140 (8)0.0037 (8)−0.0029 (7)
N1—C111.341 (2)C5—H5A0.9300
N1—N21.3812 (18)C6—C71.402 (4)
N1—H10.898 (9)C6—H60.9300
N2—C121.266 (2)C7—C81.362 (3)
N3—O31.2235 (18)C7—H70.9300
N3—O41.2315 (18)C8—C91.414 (3)
N3—C141.448 (2)C8—H80.9300
O1—C111.2378 (18)C9—C101.404 (2)
O2—C21.357 (2)C10—H100.9300
O2—H20.8200C12—C131.469 (2)
O5—C171.343 (2)C12—H120.9300
O5—H50.8200C13—C181.382 (2)
C1—C101.376 (2)C13—C141.399 (2)
C1—C21.426 (2)C14—C151.384 (2)
C1—C111.479 (2)C15—C161.371 (2)
C2—C31.364 (2)C15—H150.9300
C3—C41.405 (3)C16—C171.387 (2)
C3—H30.9300C16—H160.9300
C4—C91.414 (3)C17—C181.387 (2)
C4—C51.422 (3)C18—H180.9300
C5—C61.357 (4)
C11—N1—N2120.64 (13)C9—C8—H8119.8
C11—N1—H1120.7 (13)C10—C9—C4118.26 (17)
N2—N1—H1118.4 (13)C10—C9—C8122.1 (2)
C12—N2—N1114.48 (14)C4—C9—C8119.63 (18)
O3—N3—O4122.43 (14)C1—C10—C9122.28 (17)
O3—N3—C14120.03 (14)C1—C10—H10118.9
O4—N3—C14117.54 (14)C9—C10—H10118.9
C2—O2—H2109.5O1—C11—N1121.64 (14)
C17—O5—H5109.5O1—C11—C1121.38 (15)
C10—C1—C2118.58 (15)N1—C11—C1116.98 (14)
C10—C1—C11122.05 (15)N2—C12—C13120.90 (15)
C2—C1—C11119.31 (14)N2—C12—H12119.5
O2—C2—C3118.43 (17)C13—C12—H12119.5
O2—C2—C1121.50 (15)C18—C13—C14116.75 (14)
C3—C2—C1120.07 (17)C18—C13—C12119.55 (15)
C2—C3—C4121.34 (18)C14—C13—C12123.64 (14)
C2—C3—H3119.3C15—C14—C13121.96 (14)
C4—C3—H3119.3C15—C14—N3116.99 (14)
C3—C4—C9119.42 (16)C13—C14—N3121.04 (14)
C3—C4—C5122.1 (2)C16—C15—C14119.98 (15)
C9—C4—C5118.4 (2)C16—C15—H15120.0
C6—C5—C4120.2 (3)C14—C15—H15120.0
C6—C5—H5A119.9C15—C16—C17119.39 (15)
C4—C5—H5A119.9C15—C16—H16120.3
C5—C6—C7121.3 (2)C17—C16—H16120.3
C5—C6—H6119.4O5—C17—C16122.72 (15)
C7—C6—H6119.4O5—C17—C18117.25 (16)
C8—C7—C6120.1 (3)C16—C17—C18120.03 (15)
C8—C7—H7119.9C13—C18—C17121.79 (16)
C6—C7—H7119.9C13—C18—H18119.1
C7—C8—C9120.3 (3)C17—C18—H18119.1
C7—C8—H8119.8
D—H···AD—HH···AD···AD—H···A
O2—H2···O10.821.882.5987 (18)146
N1—H1···O4i0.90 (1)2.14 (1)3.0361 (19)173 (2)
O5—H5···O1ii0.821.882.6889 (17)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2⋯O10.821.882.5987 (18)146
N1—H1⋯O4i 0.898 (9)2.144 (10)3.0361 (19)172.8 (18)
O5—H5⋯O1ii 0.821.882.6889 (17)168

Symmetry codes: (i) ; (ii) .

  7 in total

1.  Synthesis, antibacterial and antifungal activity of some new thiazolylhydrazone derivatives containing 3-substituted cyclobutane ring.

Authors:  Alaaddin Cukurovali; Ibrahim Yilmaz; Seher Gur; Cavit Kazaz
Journal:  Eur J Med Chem       Date:  2005-12-27       Impact factor: 6.514

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  (E)-4-Chloro-N'-(4-hydroxy-benzyl-idene)-benzohydrazide.

Authors:  De-Suo Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-30

4.  (E)-4-Chloro-N'-[1-(4-hydroxy-phenyl)-ethylidene]benzohydrazide.

Authors:  De-Suo Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-30

5.  4-Chloro-N'-(2-hydr-oxy-1-naphthyl-idene)benzohydrazide.

Authors:  De-Suo Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-16

6.  Synthesis, spectral characterization, in-vitro microbiological evaluation and cytotoxic activities of novel macrocyclic bis hydrazone.

Authors:  Prakash Gouda Avaji; C H Vinod Kumar; Sangamesh A Patil; K N Shivananda; C Nagaraju
Journal:  Eur J Med Chem       Date:  2009-04-05       Impact factor: 6.514

7.  4-Chloro-N'-(5-chloro-2-hydroxy-benzyl-idene)benzohydrazide.

Authors:  De-Suo Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-16
  7 in total

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