| Literature DB >> 21578704 |
Zai-Chao Zhang1, Rong-Qing Li, Yu Zhang.
Abstract
In the title compound, [Mn(C(5)H(9)N(2)O(7)P(2))(2)(H(2)O)(2)], the Mn(II) atom (site symmetry ) is coordinated by four phos-pho-n-ate O atoms from a pair of partially deprotonated 1-hydr-oxy-2-(imidazol-3-yl)ethane-1,1-bis-phophonic acid ligands (imhedpH(3) (-)) and two water mol-ecules, resulting in a slightly distorted trans-MnO(6) octa-hedral geometry for the metal ion. In the ligands, the imidazole units are protonated and two of the hydr-oxy O atoms of the phospho-nate groups are deprotonated and chelate the Mn(II), thus forming the neutral mol-ecule of the title compound. The two protonated O atoms within the phospho-nate groups of one imhedpH(3) (-) ligand act as hydrogen-bond acceptors for a bifurcated hydrogen bond originating from the coordinated water mol-ecule. The phospho-nate units of neigboring mol-ecules are connected with their equivalents in neighboring mol-ecules via two types of inversion-symmetric hydrogen-bonding arrangements with four and two strong O-H⋯O hydrogen bonds, respectively. The two inter-actions connect mol-ecules into infinite chains along [111] and [110], in combination forming a tightly hydrogen-bonded three-dimensional supra-molecular network. This network is further stabilized by additional hydrogen bonds between the protonated imidazole units and one of the coordinated P-O O atoms and by additional O-H⋯O hydrogen bonds between the water mol-ecules and the P=O O atoms of neigboring mol-ecules.Entities:
Year: 2009 PMID: 21578704 PMCID: PMC2972148 DOI: 10.1107/S160053680905065X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Mn(C5H9N2O7P2)2(H2O)2] | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 584 reflections | |
| θ = 2.4–24.6° | |
| µ = 1.00 mm−1 | |
| α = 105.366 (4)° | |
| β = 110.865 (4)° | Block, light pink |
| γ = 97.461 (4)° | 0.25 × 0.20 × 0.20 mm |
| Bruker SMART APEXII diffractometer | 1829 independent reflections |
| Radiation source: fine-focus sealed tube | 1543 reflections with |
| graphite | |
| ω scans | θmax = 25.0°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 2637 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1829 reflections | (Δ/σ)max < 0.001 |
| 175 parameters | Δρmax = 0.49 e Å−3 |
| 0 restraints | Δρmin = −0.46 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| C1 | 0.7059 (7) | 0.0407 (6) | 0.4433 (6) | 0.0313 (11) | |
| H1 | 0.5957 | −0.0541 | 0.3933 | 0.038* | |
| C2 | 0.9765 (8) | 0.2242 (6) | 0.6170 (6) | 0.0411 (13) | |
| H2 | 1.0898 | 0.2812 | 0.7125 | 0.049* | |
| C3 | 0.9192 (7) | 0.2695 (6) | 0.4880 (5) | 0.0330 (12) | |
| H3 | 0.9850 | 0.3632 | 0.4743 | 0.040* | |
| C4 | 0.6265 (7) | 0.1604 (6) | 0.2269 (5) | 0.0263 (10) | |
| H4A | 0.5289 | 0.0511 | 0.1646 | 0.032* | |
| H4B | 0.7133 | 0.1768 | 0.1719 | 0.032* | |
| C5 | 0.5147 (6) | 0.2977 (5) | 0.2313 (5) | 0.0186 (9) | |
| Mn1 | 0.0000 | 0.0000 | 0.0000 | 0.0188 (3) | |
| N1 | 0.7483 (5) | 0.1543 (4) | 0.3809 (4) | 0.0231 (8) | |
| N2 | 0.8436 (7) | 0.0832 (5) | 0.5856 (5) | 0.0393 (11) | |
| H2A | 0.8485 | 0.0279 | 0.6511 | 0.047* | |
| O1 | 0.2208 (4) | 0.1161 (3) | −0.0561 (3) | 0.0218 (7) | |
| O2 | 0.5292 (4) | 0.2914 (3) | −0.0465 (3) | 0.0212 (7) | |
| O3 | 0.2772 (4) | 0.4247 (4) | 0.0239 (4) | 0.0236 (7) | |
| H3A | 0.355 (7) | 0.511 (6) | 0.031 (5) | 0.028* | |
| O4 | 0.1983 (4) | 0.1153 (4) | 0.2449 (3) | 0.0256 (7) | |
| O5 | 0.4729 (4) | 0.3069 (4) | 0.5030 (3) | 0.0258 (7) | |
| O6 | 0.2356 (5) | 0.4203 (4) | 0.3166 (3) | 0.0258 (7) | |
| H6A | 0.316 (7) | 0.515 (6) | 0.369 (6) | 0.031* | |
| O7 | 0.6604 (5) | 0.4552 (4) | 0.3074 (4) | 0.0274 (8) | |
| H7A | 0.616 (7) | 0.534 (6) | 0.347 (6) | 0.033* | |
| O8 | −0.1140 (6) | 0.2247 (5) | −0.0097 (5) | 0.0421 (10) | |
| H8A | −0.232 (9) | 0.226 (7) | −0.018 (7) | 0.051* | |
| H8B | −0.021 (9) | 0.314 (7) | 0.028 (7) | 0.051* | |
| P1 | 0.37848 (16) | 0.27554 (13) | 0.02248 (13) | 0.0187 (3) | |
| P2 | 0.34950 (16) | 0.27977 (13) | 0.33400 (12) | 0.0203 (3) |
| C1 | 0.032 (3) | 0.032 (3) | 0.038 (3) | 0.011 (2) | 0.017 (2) | 0.020 (2) |
| C2 | 0.041 (3) | 0.036 (3) | 0.030 (3) | 0.008 (3) | −0.003 (2) | 0.011 (2) |
| C3 | 0.031 (3) | 0.029 (3) | 0.030 (3) | 0.001 (2) | 0.004 (2) | 0.011 (2) |
| C4 | 0.027 (3) | 0.030 (3) | 0.020 (2) | 0.013 (2) | 0.008 (2) | 0.006 (2) |
| C5 | 0.015 (2) | 0.020 (2) | 0.016 (2) | 0.0023 (18) | 0.0028 (18) | 0.0052 (17) |
| Mn1 | 0.0177 (5) | 0.0178 (5) | 0.0178 (5) | 0.0005 (4) | 0.0058 (4) | 0.0047 (4) |
| N1 | 0.021 (2) | 0.025 (2) | 0.022 (2) | 0.0057 (16) | 0.0065 (17) | 0.0092 (16) |
| N2 | 0.052 (3) | 0.045 (3) | 0.031 (2) | 0.016 (2) | 0.017 (2) | 0.026 (2) |
| O1 | 0.0219 (17) | 0.0240 (17) | 0.0183 (16) | 0.0013 (13) | 0.0098 (13) | 0.0051 (13) |
| O2 | 0.0197 (16) | 0.0242 (16) | 0.0232 (16) | 0.0056 (13) | 0.0111 (13) | 0.0099 (13) |
| O3 | 0.0211 (17) | 0.0222 (17) | 0.0342 (18) | 0.0055 (13) | 0.0143 (15) | 0.0155 (14) |
| O4 | 0.0316 (18) | 0.0241 (17) | 0.0153 (16) | −0.0009 (14) | 0.0062 (14) | 0.0061 (13) |
| O5 | 0.0251 (17) | 0.0299 (18) | 0.0168 (16) | 0.0001 (14) | 0.0063 (14) | 0.0057 (13) |
| O6 | 0.0223 (18) | 0.0273 (18) | 0.0225 (17) | 0.0041 (14) | 0.0080 (14) | 0.0027 (14) |
| O7 | 0.0222 (17) | 0.0244 (18) | 0.0294 (18) | 0.0004 (14) | 0.0095 (15) | 0.0035 (14) |
| O8 | 0.023 (2) | 0.026 (2) | 0.077 (3) | 0.0073 (16) | 0.021 (2) | 0.0163 (19) |
| P1 | 0.0175 (6) | 0.0197 (6) | 0.0188 (6) | 0.0028 (5) | 0.0078 (5) | 0.0065 (5) |
| P2 | 0.0211 (6) | 0.0205 (6) | 0.0162 (6) | 0.0009 (5) | 0.0073 (5) | 0.0038 (5) |
| C1—N2 | 1.309 (6) | Mn1—O4 | 2.159 (3) |
| C1—N1 | 1.334 (6) | Mn1—O4i | 2.159 (3) |
| C1—H1 | 0.9500 | Mn1—O8i | 2.213 (4) |
| C2—N2 | 1.345 (6) | Mn1—O8 | 2.213 (4) |
| C2—C3 | 1.347 (6) | N2—H2A | 0.8800 |
| C2—H2 | 0.9500 | O1—P1 | 1.489 (3) |
| C3—N1 | 1.363 (6) | O2—P1 | 1.505 (3) |
| C3—H3 | 0.9500 | O3—P1 | 1.565 (3) |
| C4—N1 | 1.462 (5) | O3—H3A | 0.85 (5) |
| C4—C5 | 1.526 (6) | O4—P2 | 1.499 (3) |
| C4—H4A | 0.9900 | O5—P2 | 1.499 (3) |
| C4—H4B | 0.9900 | O6—P2 | 1.571 (3) |
| C5—O7 | 1.437 (5) | O6—H6A | 0.84 (5) |
| C5—P2 | 1.850 (4) | O7—H7A | 0.85 (5) |
| C5—P1 | 1.854 (4) | O8—H8A | 0.86 (6) |
| Mn1—O1 | 2.116 (3) | O8—H8B | 0.85 (6) |
| Mn1—O1i | 2.116 (3) | ||
| N2—C1—N1 | 107.7 (4) | O1—Mn1—O8 | 84.33 (13) |
| N2—C1—H1 | 126.2 | O1i—Mn1—O8 | 95.67 (13) |
| N1—C1—H1 | 126.2 | O4—Mn1—O8 | 93.01 (13) |
| N2—C2—C3 | 107.3 (4) | O4i—Mn1—O8 | 86.99 (13) |
| N2—C2—H2 | 126.3 | O8i—Mn1—O8 | 180.0 |
| C3—C2—H2 | 126.3 | C1—N1—C3 | 108.7 (4) |
| C2—C3—N1 | 106.5 (4) | C1—N1—C4 | 125.9 (4) |
| C2—C3—H3 | 126.8 | C3—N1—C4 | 125.4 (4) |
| N1—C3—H3 | 126.8 | C1—N2—C2 | 109.9 (4) |
| N1—C4—C5 | 114.6 (3) | C1—N2—H2A | 125.1 |
| N1—C4—H4A | 108.6 | C2—N2—H2A | 125.1 |
| C5—C4—H4A | 108.6 | P1—O1—Mn1 | 134.48 (17) |
| N1—C4—H4B | 108.6 | P1—O3—H3A | 111 (3) |
| C5—C4—H4B | 108.6 | P2—O4—Mn1 | 132.06 (17) |
| H4A—C4—H4B | 107.6 | P2—O6—H6A | 110 (3) |
| O7—C5—C4 | 107.3 (3) | C5—O7—H7A | 113 (3) |
| O7—C5—P2 | 111.1 (3) | Mn1—O8—H8A | 121 (4) |
| C4—C5—P2 | 112.1 (3) | Mn1—O8—H8B | 113 (4) |
| O7—C5—P1 | 108.2 (3) | H8A—O8—H8B | 123 (5) |
| C4—C5—P1 | 104.7 (3) | O1—P1—O2 | 115.48 (17) |
| P2—C5—P1 | 113.0 (2) | O1—P1—O3 | 108.67 (17) |
| O1—Mn1—O1i | 180.00 (17) | O2—P1—O3 | 110.18 (16) |
| O1—Mn1—O4 | 88.32 (11) | O1—P1—C5 | 108.75 (17) |
| O1i—Mn1—O4 | 91.68 (11) | O2—P1—C5 | 107.50 (18) |
| O1—Mn1—O4i | 91.68 (11) | O3—P1—C5 | 105.82 (18) |
| O1i—Mn1—O4i | 88.32 (11) | O5—P2—O4 | 115.53 (17) |
| O4—Mn1—O4i | 180.00 (17) | O5—P2—O6 | 111.28 (17) |
| O1—Mn1—O8i | 95.67 (13) | O4—P2—O6 | 107.09 (18) |
| O1i—Mn1—O8i | 84.33 (13) | O5—P2—C5 | 109.22 (18) |
| O4—Mn1—O8i | 86.99 (13) | O4—P2—C5 | 107.87 (18) |
| O4i—Mn1—O8i | 93.01 (13) | O6—P2—C5 | 105.31 (18) |
| H··· | ||||
| N2—H2A···O4ii | 0.88 | 1.85 | 2.718 (5) | 167 |
| O7—H7A···O5iii | 0.85 (5) | 2.07 (5) | 2.889 (4) | 162 (5) |
| O6—H6A···O5iii | 0.84 (5) | 1.82 (5) | 2.653 (4) | 167 (5) |
| O3—H3A···O2iv | 0.85 (5) | 1.74 (5) | 2.573 (4) | 167 (5) |
| O8—H8A···O2v | 0.86 (6) | 1.88 (6) | 2.707 (5) | 162 (5) |
| O8—H8B···O3 | 0.85 (6) | 2.32 (6) | 3.042 (5) | 143 (5) |
| O8—H8B···O6 | 0.85 (6) | 2.59 (6) | 3.124 (5) | 122 (5) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.88 | 1.85 | 2.718 (5) | 167 |
| O7—H7 | 0.85 (5) | 2.07 (5) | 2.889 (4) | 162 (5) |
| O6—H6 | 0.84 (5) | 1.82 (5) | 2.653 (4) | 167 (5) |
| O3—H3 | 0.85 (5) | 1.74 (5) | 2.573 (4) | 167 (5) |
| O8—H8 | 0.86 (6) | 1.88 (6) | 2.707 (5) | 162 (5) |
| O8—H8 | 0.85 (6) | 2.32 (6) | 3.042 (5) | 143 (5) |
| O8—H8 | 0.85 (6) | 2.59 (6) | 3.124 (5) | 122 (5) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .