Literature DB >> 21578701

trans-Bis(4,6-dimethyl-pyrimidine-2-thiol-ato-κN,S)bis-(thio-urea-κS)nickel(II).

Jing Zhu1, Jian-Gang Wang, Taike Duan, Qian-Feng Zhang.   

Abstract

In the title complex, [Ni(C(6)H(7)N(2)S)(2)(CH(4)N(2)S)(2)], the central Ni atom (located on a centre of inversion) is six-coordinated by two monoanionic N,S-chelating 4,6-dimethyl-pyrimidine-2-thiol-ate ligands and two trans S-coordinating thio-urea groups. The trans-N(2)S(4) donor set defines a distorted octa-hedral geometry.

Entities:  

Year:  2009        PMID: 21578701      PMCID: PMC2971843          DOI: 10.1107/S1600536809050223

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the significance of transition-metal complexes of heterocyclic thione ligands, see: Dilworth & Hu (1993 ▶); Figgis & Reynolds (1986 ▶); Zamudio-Rivera et al. (2005 ▶). For related structures, see: Rodríguez et al. (2007 ▶); Weininger et al. (1969 ▶).

Experimental

Crystal data

[Ni(C6H7N2S)2(CH4N2S)2] M = 489.35 Orthorhombic, a = 15.0306 (2) Å b = 8.5783 (1) Å c = 16.9274 (2) Å V = 2182.57 (5) Å3 Z = 4 Mo Kα radiation μ = 1.29 mm−1 T = 296 K 0.12 × 0.12 × 0.08 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.861, T max = 0.901 17226 measured reflections 2495 independent reflections 1542 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.101 S = 1.07 2495 reflections 126 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.30 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809050223/tk2572sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809050223/tk2572Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C6H7N2S)2(CH4N2S)2]F(000) = 1016
Mr = 489.35Dx = 1.489 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2124 reflections
a = 15.0306 (2) Åθ = 2.4–20.9°
b = 8.5783 (1) ŵ = 1.29 mm1
c = 16.9274 (2) ÅT = 296 K
V = 2182.57 (5) Å3Bar, green
Z = 40.12 × 0.12 × 0.08 mm
Bruker SMART CCD area-detector diffractometer2495 independent reflections
Radiation source: fine-focus sealed tube1542 reflections with I > 2σ(I)
graphiteRint = 0.061
phi and ω scansθmax = 27.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −12→19
Tmin = 0.861, Tmax = 0.901k = −11→11
17226 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0412P)2] where P = (Fo2 + 2Fc2)/3
2495 reflections(Δ/σ)max = 0.001
126 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni11.00000.00000.50000.03228 (16)
S11.01100 (5)0.11627 (9)0.36624 (4)0.0379 (2)
S20.99725 (5)0.28135 (9)0.53580 (5)0.0452 (2)
N10.87628 (14)0.0228 (2)0.44894 (13)0.0335 (5)
N20.83917 (16)0.1316 (3)0.32332 (13)0.0456 (6)
N30.92492 (18)0.2365 (3)0.67697 (14)0.0571 (8)
H3A0.90320.26940.72090.068*
H3B0.92670.13820.66720.068*
N40.9512 (2)0.4872 (3)0.64286 (17)0.0654 (8)
H4A0.92910.51620.68730.078*
H4B0.97070.55560.61000.078*
C10.89783 (18)0.0895 (3)0.37873 (16)0.0336 (6)
C20.7691 (2)−0.0829 (5)0.54075 (19)0.0657 (10)
H2A0.8090−0.16870.54910.099*
H2B0.7090−0.12070.53940.099*
H2C0.7754−0.00910.58300.099*
C30.7906 (2)−0.0057 (3)0.46408 (18)0.0428 (8)
C40.7263 (2)0.0366 (4)0.40970 (19)0.0575 (10)
H40.66640.01860.42000.069*
C50.7525 (2)0.1057 (4)0.34018 (18)0.0554 (9)
C60.6865 (2)0.1604 (5)0.2792 (2)0.0953 (15)
H6A0.71430.23560.24530.143*
H6B0.63640.20740.30520.143*
H6C0.66670.07310.24840.143*
C70.9555 (2)0.3363 (4)0.62490 (17)0.0416 (7)
U11U22U33U12U13U23
Ni10.0289 (3)0.0400 (3)0.0280 (3)0.0001 (2)0.0017 (2)0.0070 (2)
S10.0374 (4)0.0437 (4)0.0327 (4)−0.0003 (4)0.0069 (3)0.0059 (3)
S20.0548 (5)0.0385 (4)0.0423 (5)−0.0011 (4)0.0081 (4)0.0016 (3)
N10.0282 (12)0.0417 (14)0.0304 (13)−0.0005 (11)0.0009 (10)0.0044 (11)
N20.0409 (15)0.0643 (18)0.0317 (13)0.0069 (13)−0.0066 (12)0.0038 (12)
N30.085 (2)0.0480 (16)0.0380 (15)−0.0051 (16)0.0154 (15)−0.0092 (13)
N40.087 (2)0.0444 (18)0.0643 (19)0.0023 (16)0.0046 (18)−0.0123 (14)
C10.0341 (16)0.0353 (16)0.0314 (15)0.0052 (13)−0.0019 (13)−0.0016 (13)
C20.044 (2)0.097 (3)0.056 (2)−0.014 (2)0.0104 (18)0.019 (2)
C30.0318 (17)0.059 (2)0.0375 (17)−0.0024 (15)0.0056 (14)0.0005 (15)
C40.0306 (18)0.092 (3)0.050 (2)0.0030 (18)−0.0033 (16)−0.0025 (19)
C50.040 (2)0.084 (3)0.0422 (18)0.0046 (19)−0.0097 (15)−0.0002 (18)
C60.055 (2)0.167 (4)0.064 (2)0.012 (3)−0.025 (2)0.024 (3)
C70.0420 (18)0.0407 (17)0.0421 (17)0.0009 (15)−0.0100 (15)−0.0058 (16)
Ni1—N1i2.060 (2)N4—C71.330 (3)
Ni1—N12.060 (2)N4—H4A0.8600
Ni1—S12.4798 (7)N4—H4B0.8600
Ni1—S1i2.4798 (7)C2—C31.493 (4)
Ni1—S22.4888 (8)C2—H2A0.9600
Ni1—S2i2.4888 (8)C2—H2B0.9600
S1—C11.729 (3)C2—H2C0.9600
S2—C71.700 (3)C3—C41.383 (4)
N1—C31.336 (3)C4—C51.375 (4)
N1—C11.358 (3)C4—H40.9300
N2—C11.337 (3)C5—C61.506 (4)
N2—C51.352 (4)C6—H6A0.9600
N3—C71.312 (4)C6—H6B0.9600
N3—H3A0.8600C6—H6C0.9600
N3—H3B0.8600
N1i—Ni1—N1180.0N2—C1—N1124.8 (2)
N1i—Ni1—S1111.17 (6)N2—C1—S1121.8 (2)
N1—Ni1—S168.83 (6)N1—C1—S1113.42 (19)
N1i—Ni1—S1i68.83 (6)C3—C2—H2A109.5
N1—Ni1—S1i111.17 (6)C3—C2—H2B109.5
S1—Ni1—S1i180.0H2A—C2—H2B109.5
N1i—Ni1—S290.28 (6)C3—C2—H2C109.5
N1—Ni1—S289.72 (6)H2A—C2—H2C109.5
S1—Ni1—S280.41 (3)H2B—C2—H2C109.5
S1i—Ni1—S299.59 (3)N1—C3—C4119.8 (3)
N1i—Ni1—S2i89.72 (6)N1—C3—C2117.2 (3)
N1—Ni1—S2i90.28 (6)C4—C3—C2123.0 (3)
S1—Ni1—S2i99.59 (3)C5—C4—C3118.9 (3)
S1i—Ni1—S2i80.41 (3)C5—C4—H4120.6
S2—Ni1—S2i180.0C3—C4—H4120.6
C1—S1—Ni176.66 (9)N2—C5—C4121.8 (3)
C7—S2—Ni1119.41 (11)N2—C5—C6116.0 (3)
C3—N1—C1118.3 (2)C4—C5—C6122.1 (3)
C3—N1—Ni1140.6 (2)C5—C6—H6A109.5
C1—N1—Ni1101.06 (16)C5—C6—H6B109.5
C1—N2—C5116.3 (3)H6A—C6—H6B109.5
C7—N3—H3A120.0C5—C6—H6C109.5
C7—N3—H3B120.0H6A—C6—H6C109.5
H3A—N3—H3B120.0H6B—C6—H6C109.5
C7—N4—H4A120.0N3—C7—N4117.7 (3)
C7—N4—H4B120.0N3—C7—S2123.0 (2)
H4A—N4—H4B120.0N4—C7—S2119.3 (2)
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