Literature DB >> 21578688

Tetra-aqua-diazido-cobalt(II) 4,4'-dicarboxyl-ato-1,1'-ethyl-enedi-pyridinium dihydrate.

Kun Wang1, Yan-Qin Wang, Jian-Yong Zhang, En-Qing Gao.   

Abstract

In the title compound, [Co(N(3))(2)(H(2)O)(4)]·C(14)H(12)N(2)O(4)·2H(2)O, the metal complex mol-ecule is centrosymmetric, the Co(II) ion being six-coordinated by two azide N atoms and four aqua O atoms with a trans-octa-hedral geometry. The zwitterionic organic mol-ecule is also centrosymmetric. In the crystal, the components are associated into a two-dimensional network through O-H⋯O hydrogen bonds. Further O-H⋯O and O-H⋯N inter-actions give a three-dimensional structure. The free water molecule is disordered over two positions in a 0.787 (5):0.213 (5) ratio.

Entities:  

Year:  2009        PMID: 21578688      PMCID: PMC2971761          DOI: 10.1107/S1600536809049848

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on hydrogen bonds in crystal engineering, see: Baures et al. (2006 ▶); Braga & Grepioni (2000 ▶); Maly et al. (2006 ▶). For the ligand synthesis, see: Loeb et al. (2006 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶); Etter (1990 ▶).

Experimental

Crystal data

[Co(N3)2(H2O)4]·C14H12N2O4·2H2O M = 523.34 Triclinic, a = 7.1951 (5) Å b = 9.0354 (7) Å c = 9.0915 (5) Å α = 71.402 (3)° β = 85.568 (2)° γ = 69.752 (2)° V = 525.20 (6) Å3 Z = 1 Mo Kα radiation μ = 0.89 mm−1 T = 296 K 0.08 × 0.08 × 0.02 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.932, T max = 0.982 6498 measured reflections 2029 independent reflections 2016 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.089 S = 1.18 2029 reflections 183 parameters 13 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809049848/bg2309sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809049848/bg2309Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(N3)2(H2O)4]·C14H12N2O4·2H2OZ = 1
Mr = 523.34F(000) = 271
Triclinic, P1Dx = 1.655 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.1951 (5) ÅCell parameters from 7436 reflections
b = 9.0354 (7) Åθ = 2.5–27.6°
c = 9.0915 (5) ŵ = 0.89 mm1
α = 71.402 (3)°T = 296 K
β = 85.568 (2)°Sheet, orange
γ = 69.752 (2)°0.08 × 0.08 × 0.02 mm
V = 525.20 (6) Å3
Bruker APEXII CCD area-detector diffractometer2029 independent reflections
Radiation source: fine-focus sealed tube2016 reflections with I > 2σ(I)
graphiteRint = 0.020
phi and ω scansθmax = 26.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −7→8
Tmin = 0.932, Tmax = 0.982k = −11→11
6498 measured reflectionsl = −11→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.089w = 1/[σ2(Fo2) + (0.0517P)2 + 0.2305P] where P = (Fo2 + 2Fc2)/3
S = 1.18(Δ/σ)max < 0.001
2029 reflectionsΔρmax = 0.34 e Å3
183 parametersΔρmin = −0.35 e Å3
13 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.072 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Co10.50000.50000.00000.02233 (16)
N1−0.0182 (2)0.06625 (19)0.78289 (17)0.0240 (3)
N20.5369 (3)0.4349 (3)0.2408 (2)0.0458 (5)
N30.4823 (2)0.3822 (2)0.36258 (18)0.0283 (4)
O30.4820 (2)0.26543 (17)0.02090 (16)0.0300 (3)
H310.425 (4)0.272 (3)−0.058 (2)0.045*
H320.420 (4)0.229 (3)0.099 (2)0.045*
O40.18626 (19)0.59340 (17)0.00759 (16)0.0298 (3)
H420.146 (4)0.535 (3)0.087 (2)0.045*
H410.135 (4)0.600 (3)−0.072 (2)0.045*
C10.1394 (3)0.2551 (3)0.3161 (2)0.0316 (4)
C20.0846 (3)0.1895 (2)0.4838 (2)0.0267 (4)
C30.1985 (3)0.0345 (2)0.5774 (2)0.0284 (4)
H3A0.3109−0.02880.53920.034*
C40.1448 (3)−0.0255 (2)0.7271 (2)0.0279 (4)
H4A0.2211−0.12980.79030.033*
C5−0.1306 (3)0.2167 (2)0.6939 (2)0.0322 (4)
H5A−0.24260.27790.73420.039*
C6−0.0818 (3)0.2812 (3)0.5435 (2)0.0335 (4)
H6A−0.16020.38590.48230.040*
C7−0.0719 (3)−0.0022 (2)0.9445 (2)0.0283 (4)
H7A−0.0663−0.11560.96360.034*
H7B−0.20610.06310.96070.034*
N40.4358 (4)0.3278 (3)0.4876 (2)0.0546 (6)
O10.2747 (3)0.1567 (2)0.26605 (18)0.0470 (4)
O20.0391 (2)0.4020 (2)0.24191 (17)0.0447 (4)
O50.2585 (3)0.2801 (3)0.7844 (2)0.0415 (7)0.787 (5)
H50.344 (3)0.244 (3)0.727 (3)0.062*
H510.193 (5)0.377 (3)0.760 (4)0.062*0.787 (5)
O5'0.4261 (18)0.1544 (12)0.7953 (9)0.059 (3)0.213 (5)
H520.506 (13)0.097 (6)0.744 (6)0.089*0.213 (5)
U11U22U33U12U13U23
Co10.0217 (2)0.0262 (2)0.0185 (2)−0.00944 (14)0.00190 (12)−0.00503 (13)
N10.0264 (7)0.0293 (8)0.0161 (7)−0.0115 (6)0.0029 (5)−0.0050 (6)
N20.0542 (12)0.0691 (13)0.0221 (9)−0.0363 (11)0.0023 (8)−0.0080 (8)
N30.0273 (8)0.0341 (8)0.0252 (9)−0.0110 (7)−0.0001 (6)−0.0105 (7)
O30.0309 (7)0.0337 (7)0.0279 (7)−0.0147 (6)0.0038 (5)−0.0096 (6)
O40.0256 (6)0.0341 (7)0.0267 (7)−0.0118 (5)0.0019 (5)−0.0041 (6)
C10.0371 (10)0.0469 (11)0.0172 (8)−0.0266 (9)−0.0001 (7)−0.0048 (8)
C20.0309 (9)0.0378 (10)0.0169 (8)−0.0208 (8)−0.0002 (7)−0.0058 (7)
C30.0308 (9)0.0330 (9)0.0230 (9)−0.0120 (8)0.0068 (7)−0.0108 (7)
C40.0299 (9)0.0262 (8)0.0231 (8)−0.0073 (7)0.0028 (7)−0.0048 (7)
C50.0291 (9)0.0329 (10)0.0260 (9)−0.0043 (8)0.0027 (7)−0.0052 (8)
C60.0327 (10)0.0333 (10)0.0248 (9)−0.0077 (8)−0.0026 (7)0.0008 (8)
C70.0322 (9)0.0345 (10)0.0163 (8)−0.0142 (8)0.0062 (7)−0.0037 (7)
N40.0637 (14)0.0823 (16)0.0274 (10)−0.0407 (13)0.0125 (9)−0.0150 (10)
O10.0690 (11)0.0510 (9)0.0277 (7)−0.0306 (9)0.0198 (7)−0.0143 (7)
O20.0378 (8)0.0585 (10)0.0247 (7)−0.0191 (7)0.0001 (6)0.0074 (7)
O50.0513 (14)0.0524 (13)0.0298 (10)−0.0267 (11)0.0064 (8)−0.0162 (9)
O5'0.107 (9)0.048 (5)0.029 (4)−0.031 (5)−0.014 (4)−0.011 (3)
Co1—N22.0903 (18)C1—C21.524 (2)
Co1—N2i2.0903 (18)C2—C31.382 (3)
Co1—O3i2.1152 (14)C2—C61.384 (3)
Co1—O32.1152 (14)C3—C41.375 (3)
Co1—O4i2.1230 (13)C3—H3A0.9300
Co1—O42.1230 (13)C4—H4A0.9300
N1—C51.340 (2)C5—C61.376 (3)
N1—C41.350 (2)C5—H5A0.9300
N1—C71.479 (2)C6—H6A0.9300
N2—N31.154 (2)C7—C7ii1.519 (4)
N3—N41.159 (3)C7—H7A0.9700
O3—H310.826 (16)C7—H7B0.9700
O3—H320.847 (16)O5—H50.824 (17)
O4—H420.846 (16)O5—H510.802 (17)
O4—H410.812 (16)O5'—H50.894 (17)
C1—O11.239 (3)O5'—H520.85 (2)
C1—O21.256 (3)
N2—Co1—N2i180.0O1—C1—O2126.83 (18)
N2—Co1—O3i89.06 (7)O1—C1—C2116.63 (18)
N2i—Co1—O3i90.94 (7)O2—C1—C2116.51 (18)
N2—Co1—O390.94 (7)C3—C2—C6118.98 (16)
N2i—Co1—O389.06 (7)C3—C2—C1120.08 (18)
O3i—Co1—O3180.00 (8)C6—C2—C1120.92 (18)
N2—Co1—O4i87.27 (7)C4—C3—C2119.67 (17)
N2i—Co1—O4i92.73 (7)C4—C3—H3A120.2
O3i—Co1—O4i88.65 (5)C2—C3—H3A120.2
O3—Co1—O4i91.35 (5)N1—C4—C3120.32 (17)
N2—Co1—O492.73 (7)N1—C4—H4A119.8
N2i—Co1—O487.27 (7)C3—C4—H4A119.8
O3i—Co1—O491.35 (5)N1—C5—C6120.57 (18)
O3—Co1—O488.65 (5)N1—C5—H5A119.7
O4i—Co1—O4180.00 (3)C6—C5—H5A119.7
C5—N1—C4120.90 (15)C5—C6—C2119.56 (18)
C5—N1—C7120.17 (15)C5—C6—H6A120.2
C4—N1—C7118.94 (15)C2—C6—H6A120.2
N3—N2—Co1148.27 (17)N1—C7—C7ii109.17 (18)
N2—N3—N4177.0 (2)N1—C7—H7A109.8
Co1—O3—H31109.2 (19)C7ii—C7—H7A109.8
Co1—O3—H32113.4 (18)N1—C7—H7B109.8
H31—O3—H32108 (2)C7ii—C7—H7B109.8
Co1—O4—H42111.1 (18)H7A—C7—H7B108.3
Co1—O4—H41110.5 (19)H5—O5—H51121 (3)
H42—O4—H41112 (2)H5—O5'—H52107 (3)
O3i—Co1—N2—N3129.7 (4)C5—N1—C4—C30.1 (3)
O3—Co1—N2—N3−50.3 (4)C7—N1—C4—C3179.88 (17)
O4i—Co1—N2—N3−141.6 (4)C2—C3—C4—N1−0.1 (3)
O4—Co1—N2—N338.4 (4)C4—N1—C5—C6−0.2 (3)
O1—C1—C2—C37.4 (3)C7—N1—C5—C6−179.94 (18)
O2—C1—C2—C3−174.40 (18)N1—C5—C6—C20.2 (3)
O1—C1—C2—C6−170.78 (19)C3—C2—C6—C5−0.1 (3)
O2—C1—C2—C67.4 (3)C1—C2—C6—C5178.15 (18)
C6—C2—C3—C40.0 (3)C5—N1—C7—C7ii−107.1 (2)
C1—C2—C3—C4−178.22 (17)C4—N1—C7—C7ii73.1 (3)
D—H···AD—HH···AD···AD—H···A
O3—H31···O5iii0.83 (2)1.91 (2)2.727 (2)170 (2)
O3—H31···O5'iii0.83 (2)1.96 (2)2.664 (8)143 (3)
O4—H41···O2iv0.81 (2)2.07 (2)2.870 (2)167 (3)
O5—H51···O2v0.80 (2)2.11 (2)2.877 (3)160 (4)
O3—H32···O10.85 (2)1.85 (2)2.694 (2)178 (3)
O4—H42···O20.85 (2)1.85 (2)2.687 (2)172 (2)
O5—H5···N40.82 (2)2.19 (2)2.864 (3)139 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H31⋯O5i 0.826 (16)1.908 (18)2.727 (2)170 (2)
O3—H31⋯O5′i 0.826 (16)1.96 (2)2.664 (8)143 (3)
O4—H41⋯O2ii 0.812 (16)2.072 (18)2.870 (2)167 (3)
O5—H51⋯O2iii 0.802 (17)2.110 (18)2.877 (3)160 (4)
O3—H32⋯O10.847 (16)1.847 (17)2.694 (2)178 (3)
O4—H42⋯O20.846 (16)1.847 (17)2.687 (2)172 (2)
O5—H5⋯N40.824 (17)2.19 (2)2.864 (3)138.6 (19)

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

Review 1.  Intermolecular interactions in nonorganic crystal engineering.

Authors:  D Braga; F Grepioni
Journal:  Acc Chem Res       Date:  2000-09       Impact factor: 22.384

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  A versatile template for the formation of [2]pseudorotaxanes. 1,2-Bis(pyridinium)ethane axles and 24-crown-8 ether wheels.

Authors:  Stephen J Loeb; Jorge Tiburcio; Sarah J Vella; James A Wisner
Journal:  Org Biomol Chem       Date:  2006-01-06       Impact factor: 3.876

  3 in total

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