Literature DB >> 21578675

catena-Poly[[triaqua-(pyridine-κN)nickel(II)]-μ-sulfato-κO:O'].

Yan-Fang Shi1, Fu-Xing Li, Bo Geng, Yan-Cheng Liu, Zhen-Feng Chen.   

Abstract

The title compound, [Ni(SO(4))(C(5)H(5)N)(H(2)O)(3)](n), was synthesized by the hydro-thermal reaction of NiSO(4)·6H(2)O, pyridine and water. The central Ni(II) atom is coordinated in a distorted octa-hedral environment by a pyridine N atom, three aqua O atoms and two O atoms of bridging sulfate anions, yielding a zigzag chain. A three-dimensional network is generated via complex hydrogen bonds involving the sulfate and aqua ligands and a pyridine C-H group.

Entities:  

Year:  2009        PMID: 21578675      PMCID: PMC2971987          DOI: 10.1107/S1600536809049605

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of related nickel(II) complexes, see: Wang et al. (2006 ▶); Stein et al. (2007 ▶).

Experimental

Crystal data

[Ni(SO4)(C5H5N)(H2O)3] M = 287.92 Monoclinic, a = 11.868 (3) Å b = 7.5745 (14) Å c = 11.420 (3) Å β = 110.724 (4)° V = 960.2 (3) Å3 Z = 4 Mo Kα radiation μ = 2.26 mm−1 T = 193 K 0.30 × 0.20 × 0.14 mm

Data collection

Rigaku Mercury CCD diffractometer Absorption correction: multi-scan (REQAB; Jacobson, 1998 ▶) T min = 0.465, T max = 0.729 8854 measured reflections 1746 independent reflections 1641 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.110 S = 1.16 1746 reflections 161 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.57 e Å−3 Δρmin = −0.84 e Å−3 Data collection: CrystalClear (Rigaku, 1999 ▶); cell refinement: CrystalClear; data reduction: CrystalStructure (Rigaku/MSC & Rigaku, 2000 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809049605/pk2206sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809049605/pk2206Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(SO4)(C5H5N)(H2O)3]F(000) = 592
Mr = 287.92Dx = 1.992 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71070 Å
Hall symbol: -P 2ybcCell parameters from 3550 reflections
a = 11.868 (3) Åθ = 3.1–25.3°
b = 7.5745 (14) ŵ = 2.26 mm1
c = 11.420 (3) ÅT = 193 K
β = 110.724 (4)°Block, light-green
V = 960.2 (3) Å30.30 × 0.20 × 0.14 mm
Z = 4
Rigaku Mercury CCD diffractometer1746 independent reflections
Radiation source: fine-focus sealed tube1641 reflections with I > 2σ(I)
graphiteRint = 0.040
Detector resolution: 7.31 pixels mm-1θmax = 25.3°, θmin = 3.3°
ω scansh = −14→13
Absorption correction: multi-scan (REQAB; Jacobson, 1998)k = −9→9
Tmin = 0.465, Tmax = 0.729l = −13→12
8854 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H atoms treated by a mixture of independent and constrained refinement
S = 1.16w = 1/[σ2(Fo2) + (0.0672P)2 + 0.4274P] where P = (Fo2 + 2Fc2)/3
1746 reflections(Δ/σ)max = 0.001
161 parametersΔρmax = 0.57 e Å3
6 restraintsΔρmin = −0.84 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.65136 (3)0.59664 (5)0.21049 (4)0.0112 (2)
S10.37812 (7)0.51034 (10)0.20733 (7)0.0111 (2)
O10.4632 (2)0.5757 (3)0.1473 (2)0.0144 (5)
O20.3600 (2)0.3178 (3)0.1818 (2)0.0148 (5)
O30.2651 (2)0.6067 (3)0.1535 (2)0.0185 (6)
O40.4322 (2)0.5392 (3)0.3441 (2)0.0163 (5)
O50.6504 (2)0.3741 (3)0.1062 (2)0.0139 (5)
H5A0.626 (3)0.283 (3)0.128 (3)0.017 (10)*
H5B0.619 (4)0.381 (6)0.0300 (11)0.033 (13)*
O60.6708 (2)0.4525 (3)0.3691 (2)0.0165 (5)
H6A0.687 (4)0.3472 (19)0.367 (4)0.037 (13)*
H6B0.611 (2)0.435 (5)0.387 (4)0.028 (12)*
O70.6283 (2)0.7484 (3)0.0563 (2)0.0212 (6)
H7A0.632 (4)0.724 (5)−0.0120 (19)0.034 (12)*
H7B0.609 (4)0.850 (2)0.064 (4)0.031 (12)*
N10.8352 (3)0.6199 (4)0.2656 (3)0.0179 (7)
C10.9028 (3)0.6672 (5)0.3822 (3)0.0247 (8)
H10.86370.69500.43940.030*
C21.0269 (3)0.6774 (6)0.4232 (4)0.0325 (9)
H21.07180.71120.50690.039*
C31.0846 (3)0.6379 (6)0.3407 (4)0.0345 (10)
H31.16990.64410.36640.041*
C41.0165 (4)0.5894 (5)0.2207 (5)0.0331 (10)
H41.05390.56120.16200.040*
C50.8929 (3)0.5822 (5)0.1867 (4)0.0255 (9)
H5C0.84640.54900.10340.031*
U11U22U33U12U13U23
Ni10.0115 (3)0.0107 (3)0.0109 (3)−0.00030 (14)0.0035 (2)0.00009 (15)
S10.0122 (4)0.0103 (4)0.0114 (4)−0.0005 (3)0.0050 (3)−0.0009 (3)
O10.0123 (12)0.0198 (13)0.0129 (12)−0.0013 (9)0.0066 (10)0.0014 (9)
O20.0222 (13)0.0097 (12)0.0127 (11)−0.0012 (9)0.0064 (10)−0.0036 (10)
O30.0172 (13)0.0147 (13)0.0259 (14)0.0034 (9)0.0103 (11)0.0035 (10)
O40.0226 (13)0.0160 (12)0.0113 (12)−0.0048 (10)0.0071 (10)−0.0043 (10)
O50.0188 (13)0.0144 (12)0.0081 (12)−0.0028 (10)0.0042 (10)0.0010 (10)
O60.0158 (13)0.0135 (13)0.0198 (13)−0.0005 (11)0.0058 (10)0.0022 (11)
O70.0361 (15)0.0135 (14)0.0175 (14)0.0053 (11)0.0139 (12)0.0009 (11)
N10.0154 (15)0.0150 (15)0.0223 (16)−0.0002 (11)0.0053 (12)0.0016 (12)
C10.0198 (19)0.029 (2)0.0217 (19)−0.0036 (16)0.0025 (15)−0.0012 (17)
C20.020 (2)0.035 (2)0.033 (2)−0.0033 (17)−0.0025 (17)0.002 (2)
C30.0139 (19)0.028 (2)0.057 (3)−0.0045 (16)0.007 (2)0.004 (2)
C40.024 (2)0.028 (2)0.056 (3)−0.0004 (17)0.025 (2)0.002 (2)
C50.0198 (19)0.029 (2)0.030 (2)−0.0035 (15)0.0124 (17)−0.0038 (17)
Ni1—O72.039 (2)O6—H6B0.82 (3)
Ni1—N12.053 (3)O7—H7A0.82 (3)
Ni1—O62.056 (2)O7—H7B0.815 (10)
Ni1—O52.062 (2)N1—C11.337 (5)
Ni1—O12.096 (2)N1—C51.342 (5)
Ni1—O2i2.110 (2)C1—C21.380 (5)
S1—O31.458 (2)C1—H10.9500
S1—O41.479 (2)C2—C31.380 (6)
S1—O21.488 (2)C2—H20.9500
S1—O11.491 (2)C3—C41.372 (6)
O2—Ni1ii2.110 (2)C3—H30.9500
O5—H5A0.82 (3)C4—C51.379 (6)
O5—H5B0.818 (10)C4—H40.9500
O6—H6A0.821 (10)C5—H5C0.9500
O7—Ni1—N191.13 (11)H5A—O5—H5B108 (4)
O7—Ni1—O6177.36 (10)Ni1—O6—H6A117 (3)
N1—Ni1—O689.97 (11)Ni1—O6—H6B118 (3)
O7—Ni1—O589.45 (9)H6A—O6—H6B94 (4)
N1—Ni1—O592.04 (11)Ni1—O7—H7A131 (3)
O6—Ni1—O592.91 (10)Ni1—O7—H7B113 (3)
O7—Ni1—O186.80 (10)H7A—O7—H7B115 (4)
N1—Ni1—O1177.81 (10)C1—N1—C5117.1 (3)
O6—Ni1—O192.13 (9)C1—N1—Ni1121.8 (2)
O5—Ni1—O187.23 (9)C5—N1—Ni1121.1 (3)
O7—Ni1—O2i92.22 (9)N1—C1—C2123.1 (4)
N1—Ni1—O2i91.89 (10)N1—C1—H1118.5
O6—Ni1—O2i85.33 (9)C2—C1—H1118.5
O5—Ni1—O2i175.69 (9)C3—C2—C1118.9 (4)
O1—Ni1—O2i88.90 (9)C3—C2—H2120.5
O3—S1—O4111.21 (14)C1—C2—H2120.5
O3—S1—O2111.13 (13)C4—C3—C2118.8 (4)
O4—S1—O2109.26 (13)C4—C3—H3120.6
O3—S1—O1108.13 (14)C2—C3—H3120.6
O4—S1—O1108.95 (13)C3—C4—C5118.9 (4)
O2—S1—O1108.08 (12)C3—C4—H4120.6
S1—O1—Ni1132.76 (14)C5—C4—H4120.6
S1—O2—Ni1ii134.32 (13)N1—C5—C4123.2 (4)
Ni1—O5—H5A116 (3)N1—C5—H5C118.4
Ni1—O5—H5B118 (3)C4—C5—H5C118.4
O3—S1—O1—Ni1150.13 (18)O2i—Ni1—N1—C137.9 (3)
O4—S1—O1—Ni129.1 (2)O7—Ni1—N1—C5−52.1 (3)
O2—S1—O1—Ni1−89.5 (2)O6—Ni1—N1—C5130.3 (3)
O7—Ni1—O1—S1−167.8 (2)O5—Ni1—N1—C537.4 (3)
O6—Ni1—O1—S19.8 (2)O2i—Ni1—N1—C5−144.4 (3)
O5—Ni1—O1—S1102.64 (19)C5—N1—C1—C2−0.3 (5)
O2i—Ni1—O1—S1−75.47 (19)Ni1—N1—C1—C2177.5 (3)
O3—S1—O2—Ni1ii−103.2 (2)N1—C1—C2—C30.2 (6)
O4—S1—O2—Ni1ii19.9 (2)C1—C2—C3—C4−0.1 (6)
O1—S1—O2—Ni1ii138.29 (18)C2—C3—C4—C50.1 (6)
O7—Ni1—N1—C1130.2 (3)C1—N1—C5—C40.3 (5)
O6—Ni1—N1—C1−47.4 (3)Ni1—N1—C5—C4−177.5 (3)
O5—Ni1—N1—C1−140.3 (3)C3—C4—C5—N1−0.3 (6)
D—H···AD—HH···AD···AD—H···A
O5—H5A···O4ii0.82 (3)2.04 (3)2.849 (3)170 (4)
O5—H5A···S1ii0.82 (3)2.81 (2)3.571 (3)157 (3)
O5—H5B···O1iii0.82 (1)1.94 (1)2.753 (3)173 (4)
O5—H5B···S1iii0.82 (1)2.85 (2)3.584 (3)151 (4)
O6—H6A···O3ii0.82 (1)1.95 (1)2.764 (3)172 (4)
O6—H6A···S1ii0.82 (1)2.71 (2)3.458 (3)152 (4)
O6—H6B···O40.82 (3)2.15 (3)2.821 (3)139 (4)
O6—H6B···S10.82 (3)2.85 (4)3.336 (3)120 (3)
O7—H7A···O2iii0.82 (3)2.00 (3)2.817 (3)176 (4)
O7—H7A···S1iii0.82 (3)2.82 (2)3.571 (3)154 (4)
O7—H7B···O4i0.82 (1)1.94 (2)2.690 (3)153 (4)
O7—H7B···S1i0.82 (1)2.84 (4)3.372 (3)125 (4)
C4—H4···O3iv0.952.573.304 (5)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O5—H5A⋯O4i 0.82 (3)2.04 (3)2.849 (3)170 (4)
O5—H5B⋯O1ii 0.818 (10)1.939 (12)2.753 (3)173 (4)
O6—H6A⋯O3i 0.821 (10)1.949 (12)2.764 (3)172 (4)
O6—H6B⋯O40.82 (3)2.15 (3)2.821 (3)139 (4)
O7—H7A⋯O2ii 0.82 (3)2.00 (3)2.817 (3)176 (4)
O7—H7B⋯O4iii 0.815 (10)1.94 (2)2.690 (3)153 (4)
C4—H4⋯O3iv 0.952.573.304 (5)135

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  The crystal structures of iron and cobalt pyridine (py)-sulfates, [Fe(SO4)(py)4] n and [Co3(SO4)3(py)11] n.

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Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-05-31
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