| Literature DB >> 21578675 |
Yan-Fang Shi1, Fu-Xing Li, Bo Geng, Yan-Cheng Liu, Zhen-Feng Chen.
Abstract
The title compound, [Ni(SO(4))(C(5)H(5)N)(H(2)O)(3)](n), was synthesized by the hydro-thermal reaction of NiSO(4)·6H(2)O, pyridine and water. The central Ni(II) atom is coordinated in a distorted octa-hedral environment by a pyridine N atom, three aqua O atoms and two O atoms of bridging sulfate anions, yielding a zigzag chain. A three-dimensional network is generated via complex hydrogen bonds involving the sulfate and aqua ligands and a pyridine C-H group.Entities:
Year: 2009 PMID: 21578675 PMCID: PMC2971987 DOI: 10.1107/S1600536809049605
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ni(SO4)(C5H5N)(H2O)3] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3550 reflections |
| θ = 3.1–25.3° | |
| µ = 2.26 mm−1 | |
| β = 110.724 (4)° | Block, light-green |
| 0.30 × 0.20 × 0.14 mm | |
| Rigaku Mercury CCD diffractometer | 1746 independent reflections |
| Radiation source: fine-focus sealed tube | 1641 reflections with |
| graphite | |
| Detector resolution: 7.31 pixels mm-1 | θmax = 25.3°, θmin = 3.3° |
| ω scans | |
| Absorption correction: multi-scan (REQAB; Jacobson, 1998) | |
| 8854 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1746 reflections | (Δ/σ)max = 0.001 |
| 161 parameters | Δρmax = 0.57 e Å−3 |
| 6 restraints | Δρmin = −0.84 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Ni1 | 0.65136 (3) | 0.59664 (5) | 0.21049 (4) | 0.0112 (2) | |
| S1 | 0.37812 (7) | 0.51034 (10) | 0.20733 (7) | 0.0111 (2) | |
| O1 | 0.4632 (2) | 0.5757 (3) | 0.1473 (2) | 0.0144 (5) | |
| O2 | 0.3600 (2) | 0.3178 (3) | 0.1818 (2) | 0.0148 (5) | |
| O3 | 0.2651 (2) | 0.6067 (3) | 0.1535 (2) | 0.0185 (6) | |
| O4 | 0.4322 (2) | 0.5392 (3) | 0.3441 (2) | 0.0163 (5) | |
| O5 | 0.6504 (2) | 0.3741 (3) | 0.1062 (2) | 0.0139 (5) | |
| H5A | 0.626 (3) | 0.283 (3) | 0.128 (3) | 0.017 (10)* | |
| H5B | 0.619 (4) | 0.381 (6) | 0.0300 (11) | 0.033 (13)* | |
| O6 | 0.6708 (2) | 0.4525 (3) | 0.3691 (2) | 0.0165 (5) | |
| H6A | 0.687 (4) | 0.3472 (19) | 0.367 (4) | 0.037 (13)* | |
| H6B | 0.611 (2) | 0.435 (5) | 0.387 (4) | 0.028 (12)* | |
| O7 | 0.6283 (2) | 0.7484 (3) | 0.0563 (2) | 0.0212 (6) | |
| H7A | 0.632 (4) | 0.724 (5) | −0.0120 (19) | 0.034 (12)* | |
| H7B | 0.609 (4) | 0.850 (2) | 0.064 (4) | 0.031 (12)* | |
| N1 | 0.8352 (3) | 0.6199 (4) | 0.2656 (3) | 0.0179 (7) | |
| C1 | 0.9028 (3) | 0.6672 (5) | 0.3822 (3) | 0.0247 (8) | |
| H1 | 0.8637 | 0.6950 | 0.4394 | 0.030* | |
| C2 | 1.0269 (3) | 0.6774 (6) | 0.4232 (4) | 0.0325 (9) | |
| H2 | 1.0718 | 0.7112 | 0.5069 | 0.039* | |
| C3 | 1.0846 (3) | 0.6379 (6) | 0.3407 (4) | 0.0345 (10) | |
| H3 | 1.1699 | 0.6441 | 0.3664 | 0.041* | |
| C4 | 1.0165 (4) | 0.5894 (5) | 0.2207 (5) | 0.0331 (10) | |
| H4 | 1.0539 | 0.5612 | 0.1620 | 0.040* | |
| C5 | 0.8929 (3) | 0.5822 (5) | 0.1867 (4) | 0.0255 (9) | |
| H5C | 0.8464 | 0.5490 | 0.1034 | 0.031* |
| Ni1 | 0.0115 (3) | 0.0107 (3) | 0.0109 (3) | −0.00030 (14) | 0.0035 (2) | 0.00009 (15) |
| S1 | 0.0122 (4) | 0.0103 (4) | 0.0114 (4) | −0.0005 (3) | 0.0050 (3) | −0.0009 (3) |
| O1 | 0.0123 (12) | 0.0198 (13) | 0.0129 (12) | −0.0013 (9) | 0.0066 (10) | 0.0014 (9) |
| O2 | 0.0222 (13) | 0.0097 (12) | 0.0127 (11) | −0.0012 (9) | 0.0064 (10) | −0.0036 (10) |
| O3 | 0.0172 (13) | 0.0147 (13) | 0.0259 (14) | 0.0034 (9) | 0.0103 (11) | 0.0035 (10) |
| O4 | 0.0226 (13) | 0.0160 (12) | 0.0113 (12) | −0.0048 (10) | 0.0071 (10) | −0.0043 (10) |
| O5 | 0.0188 (13) | 0.0144 (12) | 0.0081 (12) | −0.0028 (10) | 0.0042 (10) | 0.0010 (10) |
| O6 | 0.0158 (13) | 0.0135 (13) | 0.0198 (13) | −0.0005 (11) | 0.0058 (10) | 0.0022 (11) |
| O7 | 0.0361 (15) | 0.0135 (14) | 0.0175 (14) | 0.0053 (11) | 0.0139 (12) | 0.0009 (11) |
| N1 | 0.0154 (15) | 0.0150 (15) | 0.0223 (16) | −0.0002 (11) | 0.0053 (12) | 0.0016 (12) |
| C1 | 0.0198 (19) | 0.029 (2) | 0.0217 (19) | −0.0036 (16) | 0.0025 (15) | −0.0012 (17) |
| C2 | 0.020 (2) | 0.035 (2) | 0.033 (2) | −0.0033 (17) | −0.0025 (17) | 0.002 (2) |
| C3 | 0.0139 (19) | 0.028 (2) | 0.057 (3) | −0.0045 (16) | 0.007 (2) | 0.004 (2) |
| C4 | 0.024 (2) | 0.028 (2) | 0.056 (3) | −0.0004 (17) | 0.025 (2) | 0.002 (2) |
| C5 | 0.0198 (19) | 0.029 (2) | 0.030 (2) | −0.0035 (15) | 0.0124 (17) | −0.0038 (17) |
| Ni1—O7 | 2.039 (2) | O6—H6B | 0.82 (3) |
| Ni1—N1 | 2.053 (3) | O7—H7A | 0.82 (3) |
| Ni1—O6 | 2.056 (2) | O7—H7B | 0.815 (10) |
| Ni1—O5 | 2.062 (2) | N1—C1 | 1.337 (5) |
| Ni1—O1 | 2.096 (2) | N1—C5 | 1.342 (5) |
| Ni1—O2i | 2.110 (2) | C1—C2 | 1.380 (5) |
| S1—O3 | 1.458 (2) | C1—H1 | 0.9500 |
| S1—O4 | 1.479 (2) | C2—C3 | 1.380 (6) |
| S1—O2 | 1.488 (2) | C2—H2 | 0.9500 |
| S1—O1 | 1.491 (2) | C3—C4 | 1.372 (6) |
| O2—Ni1ii | 2.110 (2) | C3—H3 | 0.9500 |
| O5—H5A | 0.82 (3) | C4—C5 | 1.379 (6) |
| O5—H5B | 0.818 (10) | C4—H4 | 0.9500 |
| O6—H6A | 0.821 (10) | C5—H5C | 0.9500 |
| O7—Ni1—N1 | 91.13 (11) | H5A—O5—H5B | 108 (4) |
| O7—Ni1—O6 | 177.36 (10) | Ni1—O6—H6A | 117 (3) |
| N1—Ni1—O6 | 89.97 (11) | Ni1—O6—H6B | 118 (3) |
| O7—Ni1—O5 | 89.45 (9) | H6A—O6—H6B | 94 (4) |
| N1—Ni1—O5 | 92.04 (11) | Ni1—O7—H7A | 131 (3) |
| O6—Ni1—O5 | 92.91 (10) | Ni1—O7—H7B | 113 (3) |
| O7—Ni1—O1 | 86.80 (10) | H7A—O7—H7B | 115 (4) |
| N1—Ni1—O1 | 177.81 (10) | C1—N1—C5 | 117.1 (3) |
| O6—Ni1—O1 | 92.13 (9) | C1—N1—Ni1 | 121.8 (2) |
| O5—Ni1—O1 | 87.23 (9) | C5—N1—Ni1 | 121.1 (3) |
| O7—Ni1—O2i | 92.22 (9) | N1—C1—C2 | 123.1 (4) |
| N1—Ni1—O2i | 91.89 (10) | N1—C1—H1 | 118.5 |
| O6—Ni1—O2i | 85.33 (9) | C2—C1—H1 | 118.5 |
| O5—Ni1—O2i | 175.69 (9) | C3—C2—C1 | 118.9 (4) |
| O1—Ni1—O2i | 88.90 (9) | C3—C2—H2 | 120.5 |
| O3—S1—O4 | 111.21 (14) | C1—C2—H2 | 120.5 |
| O3—S1—O2 | 111.13 (13) | C4—C3—C2 | 118.8 (4) |
| O4—S1—O2 | 109.26 (13) | C4—C3—H3 | 120.6 |
| O3—S1—O1 | 108.13 (14) | C2—C3—H3 | 120.6 |
| O4—S1—O1 | 108.95 (13) | C3—C4—C5 | 118.9 (4) |
| O2—S1—O1 | 108.08 (12) | C3—C4—H4 | 120.6 |
| S1—O1—Ni1 | 132.76 (14) | C5—C4—H4 | 120.6 |
| S1—O2—Ni1ii | 134.32 (13) | N1—C5—C4 | 123.2 (4) |
| Ni1—O5—H5A | 116 (3) | N1—C5—H5C | 118.4 |
| Ni1—O5—H5B | 118 (3) | C4—C5—H5C | 118.4 |
| O3—S1—O1—Ni1 | 150.13 (18) | O2i—Ni1—N1—C1 | 37.9 (3) |
| O4—S1—O1—Ni1 | 29.1 (2) | O7—Ni1—N1—C5 | −52.1 (3) |
| O2—S1—O1—Ni1 | −89.5 (2) | O6—Ni1—N1—C5 | 130.3 (3) |
| O7—Ni1—O1—S1 | −167.8 (2) | O5—Ni1—N1—C5 | 37.4 (3) |
| O6—Ni1—O1—S1 | 9.8 (2) | O2i—Ni1—N1—C5 | −144.4 (3) |
| O5—Ni1—O1—S1 | 102.64 (19) | C5—N1—C1—C2 | −0.3 (5) |
| O2i—Ni1—O1—S1 | −75.47 (19) | Ni1—N1—C1—C2 | 177.5 (3) |
| O3—S1—O2—Ni1ii | −103.2 (2) | N1—C1—C2—C3 | 0.2 (6) |
| O4—S1—O2—Ni1ii | 19.9 (2) | C1—C2—C3—C4 | −0.1 (6) |
| O1—S1—O2—Ni1ii | 138.29 (18) | C2—C3—C4—C5 | 0.1 (6) |
| O7—Ni1—N1—C1 | 130.2 (3) | C1—N1—C5—C4 | 0.3 (5) |
| O6—Ni1—N1—C1 | −47.4 (3) | Ni1—N1—C5—C4 | −177.5 (3) |
| O5—Ni1—N1—C1 | −140.3 (3) | C3—C4—C5—N1 | −0.3 (6) |
| H··· | ||||
| O5—H5A···O4ii | 0.82 (3) | 2.04 (3) | 2.849 (3) | 170 (4) |
| O5—H5A···S1ii | 0.82 (3) | 2.81 (2) | 3.571 (3) | 157 (3) |
| O5—H5B···O1iii | 0.82 (1) | 1.94 (1) | 2.753 (3) | 173 (4) |
| O5—H5B···S1iii | 0.82 (1) | 2.85 (2) | 3.584 (3) | 151 (4) |
| O6—H6A···O3ii | 0.82 (1) | 1.95 (1) | 2.764 (3) | 172 (4) |
| O6—H6A···S1ii | 0.82 (1) | 2.71 (2) | 3.458 (3) | 152 (4) |
| O6—H6B···O4 | 0.82 (3) | 2.15 (3) | 2.821 (3) | 139 (4) |
| O6—H6B···S1 | 0.82 (3) | 2.85 (4) | 3.336 (3) | 120 (3) |
| O7—H7A···O2iii | 0.82 (3) | 2.00 (3) | 2.817 (3) | 176 (4) |
| O7—H7A···S1iii | 0.82 (3) | 2.82 (2) | 3.571 (3) | 154 (4) |
| O7—H7B···O4i | 0.82 (1) | 1.94 (2) | 2.690 (3) | 153 (4) |
| O7—H7B···S1i | 0.82 (1) | 2.84 (4) | 3.372 (3) | 125 (4) |
| C4—H4···O3iv | 0.95 | 2.57 | 3.304 (5) | 135 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O5—H5 | 0.82 (3) | 2.04 (3) | 2.849 (3) | 170 (4) |
| O5—H5 | 0.818 (10) | 1.939 (12) | 2.753 (3) | 173 (4) |
| O6—H6 | 0.821 (10) | 1.949 (12) | 2.764 (3) | 172 (4) |
| O6—H6 | 0.82 (3) | 2.15 (3) | 2.821 (3) | 139 (4) |
| O7—H7 | 0.82 (3) | 2.00 (3) | 2.817 (3) | 176 (4) |
| O7—H7 | 0.815 (10) | 1.94 (2) | 2.690 (3) | 153 (4) |
| C4—H4⋯O3iv | 0.95 | 2.57 | 3.304 (5) | 135 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .