Literature DB >> 21578590

Poly[[tetra-aqua-bis[μ(4)-2,2'-(p-phenyl-ene-di-oxy)diacetato][μ(2)-2,2'-(p-phenyl-ene-di-oxy)diacetato]dierbium(III)] hexa-hydrate].

Dan-Yi Wei1, Yan-Guang Zhang, Mei-Li Wang, Zhen-Ke Zhu.   

Abstract

The asymmetric unit of the title compound, [Er(2)(C(10)H(8)O(6))(3)(H(2)O)(4)]·6H(2)O, comprises one Er(3+) ion, one and a half 2,2'-(p-phenyl-enedi-oxy)diacetate (hqda) ligands, two coordinated water mol-ecules and three uncoordinated water mol-ecules. The Er(3+) ion is nine-coordinated by seven O atoms from hqda ligands and two O atoms from water mol-ecules. In the title compound, there are two types of crystallographically independent ligands: one with an inversion center in the middle of the ligand is chelating on both ends of the ligand towards each one Er center; the other hqda ligands are bridging-chelating on one side, and bridging on the other end of the ligand. Two adjacent Er(3+) ions are thus chelated and bridged by -COO groups from hqda ligands in three coordination modes (briding-chelating, bridging and chelating). These building blocks are linked by OOC-CH(2)O-C(6)H(4)-OCH(2)-COO spacers, forming two-dimensional neutral layers. Adjacent layers are linked by O-H⋯O hydrogen-bonding inter-actions, forming a three-dimensional supermolecular network.

Entities:  

Year:  2009        PMID: 21578590      PMCID: PMC2971814          DOI: 10.1107/S1600536809046613

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to metal-organic frameworks, see: Maji et al. (2005 ▶); Moulton & Zaworotko (2001 ▶); Rao et al. (2004 ▶); Sun et al. (2006 ▶); Zou et al. (2006 ▶); Burrows et al. (2000 ▶); Huang et al. (2005 ▶). For related stuctures, see: Hong et al. (2006 ▶); Li et al. (2008 ▶).

Experimental

Crystal data

[Er2(C10H8O6)3(H2O)4]·6H2O M = 1187.17 Triclinic, a = 8.5993 (17) Å b = 9.6356 (19) Å c = 12.689 (3) Å α = 102.46 (3)° β = 95.28 (3)° γ = 106.69 (3)° V = 970.0 (4) Å3 Z = 1 Mo Kα radiation μ = 4.40 mm−1 T = 298 K 0.43 × 0.29 × 0.15 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.312, T max = 0.535 9659 measured reflections 4403 independent reflections 4219 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.019 wR(F 2) = 0.044 S = 1.17 4403 reflections 271 parameters 1 restraint H-atom parameters constrained Δρmax = 0.46 e Å−3 Δρmin = −1.08 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809046613/zl2248sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809046613/zl2248Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Er2(C10H8O6)3(H2O)4]·6H2OZ = 1
Mr = 1187.17F(000) = 584
Triclinic, P1Dx = 2.032 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.5993 (17) ÅCell parameters from 8985 reflections
b = 9.6356 (19) Åθ = 3.2–27.5°
c = 12.689 (3) ŵ = 4.40 mm1
α = 102.46 (3)°T = 298 K
β = 95.28 (3)°Block, pink
γ = 106.69 (3)°0.43 × 0.29 × 0.15 mm
V = 970.0 (4) Å3
Rigaku R-AXIS RAPID diffractometer4403 independent reflections
Radiation source: fine-focus sealed tube4219 reflections with I > 2σ(I)
graphiteRint = 0.030
Detector resolution: 0 pixels mm-1θmax = 27.5°, θmin = 3.2°
ω scansh = −9→11
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −12→12
Tmin = 0.312, Tmax = 0.535l = −16→16
9659 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.019Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.044H-atom parameters constrained
S = 1.17w = 1/[σ2(Fo2) + (0.0129P)2 + 0.5344P] where P = (Fo2 + 2Fc2)/3
4403 reflections(Δ/σ)max = 0.001
271 parametersΔρmax = 0.46 e Å3
1 restraintΔρmin = −1.08 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Er10.869905 (13)0.797688 (12)−0.007667 (8)0.01362 (4)
O10.7733 (2)0.9698 (2)0.10577 (15)0.0238 (4)
O20.9134 (2)1.2049 (2)0.10636 (14)0.0220 (4)
O30.5844 (2)1.0620 (2)0.24732 (14)0.0230 (4)
O40.7484 (3)0.8777 (2)0.61490 (15)0.0307 (5)
O50.8979 (2)1.0035 (2)0.90125 (13)0.0189 (4)
O60.7683 (3)0.7795 (2)0.79481 (15)0.0295 (5)
O71.0417 (2)0.6690 (2)0.07609 (14)0.0224 (4)
O80.8399 (2)0.7140 (2)0.15645 (15)0.0239 (4)
O90.9096 (3)0.5949 (3)0.32042 (15)0.0267 (5)
O100.7747 (2)0.5361 (2)−0.08718 (17)0.0293 (5)
H10D0.81460.4726−0.07460.044*
H10C0.68990.4916−0.13170.044*
O110.5849 (3)0.7150 (3)−0.03432 (19)0.0386 (6)
H11D0.52090.7517−0.00330.058*
H11C0.52690.6420−0.08230.058*
C10.8034 (3)1.1075 (3)0.13378 (19)0.0173 (5)
C20.6953 (4)1.1713 (3)0.2068 (2)0.0235 (6)
H2B0.76561.24960.26840.028*
H2A0.63241.21670.16550.028*
C30.6421 (3)1.0209 (3)0.3382 (2)0.0211 (6)
C40.5518 (4)0.8850 (4)0.3518 (2)0.0339 (7)
H4A0.46390.82250.29820.041*
C50.5904 (4)0.8402 (4)0.4447 (2)0.0360 (7)
H5A0.52790.74830.45340.043*
C60.7213 (4)0.9312 (3)0.5240 (2)0.0241 (6)
C70.8153 (4)1.0642 (4)0.5093 (3)0.0423 (9)
H7A0.90591.12460.56160.051*
C80.7750 (4)1.1096 (4)0.4154 (3)0.0430 (9)
H8A0.83901.20020.40560.052*
C90.8428 (4)0.9852 (3)0.7110 (2)0.0261 (6)
H9B0.80121.06990.72530.031*
H9A0.95651.02140.70100.031*
C100.8329 (3)0.9155 (3)0.8065 (2)0.0190 (5)
C110.9563 (3)0.6601 (3)0.15137 (19)0.0181 (5)
C121.0010 (4)0.5810 (4)0.2341 (2)0.0243 (6)
H12B0.97880.47590.19880.029*
H12A1.11770.62390.26310.029*
C130.9586 (3)0.5444 (3)0.4075 (2)0.0206 (5)
C140.8822 (3)0.5722 (3)0.4975 (2)0.0232 (6)
H14A0.80280.62020.49560.028*
C151.0760 (3)0.4714 (3)0.4092 (2)0.0230 (6)
H15A1.12630.45170.34840.028*
O120.4607 (3)0.4588 (3)−0.19590 (18)0.0376 (5)
H12D0.37200.3998−0.19340.056*
H12C0.46990.4849−0.25300.056*
O130.3829 (3)0.8206 (4)0.0782 (2)0.0567 (8)
H13D0.28310.80570.07270.085*
H13C0.42970.90460.11800.085*
O140.5142 (4)0.5730 (4)0.6226 (2)0.0636 (8)
H14C0.58770.65230.64930.095*
H14D0.42020.56600.59760.095*
U11U22U33U12U13U23
Er10.01580 (6)0.01211 (7)0.01281 (6)0.00315 (5)0.00181 (4)0.00477 (4)
O10.0278 (10)0.0177 (11)0.0276 (10)0.0072 (9)0.0128 (8)0.0058 (8)
O20.0267 (10)0.0182 (11)0.0226 (9)0.0063 (9)0.0097 (8)0.0070 (8)
O30.0216 (9)0.0332 (12)0.0170 (8)0.0080 (9)0.0051 (8)0.0121 (9)
O40.0492 (13)0.0192 (11)0.0153 (9)0.0017 (10)−0.0075 (9)0.0049 (8)
O50.0204 (9)0.0196 (10)0.0136 (8)0.0039 (8)−0.0023 (7)0.0033 (7)
O60.0401 (12)0.0184 (11)0.0222 (9)−0.0010 (10)−0.0054 (9)0.0071 (9)
O70.0259 (10)0.0254 (11)0.0203 (9)0.0089 (9)0.0066 (8)0.0128 (8)
O80.0283 (10)0.0270 (12)0.0234 (9)0.0126 (9)0.0078 (8)0.0140 (9)
O90.0357 (11)0.0370 (13)0.0191 (9)0.0213 (11)0.0086 (8)0.0164 (9)
O100.0248 (10)0.0174 (11)0.0422 (11)0.0076 (9)−0.0026 (9)0.0024 (9)
O110.0191 (10)0.0379 (15)0.0471 (13)0.0097 (11)−0.0015 (10)−0.0118 (11)
C10.0199 (12)0.0210 (15)0.0123 (11)0.0076 (11)0.0018 (10)0.0057 (10)
C20.0336 (15)0.0248 (16)0.0195 (12)0.0145 (14)0.0110 (12)0.0110 (12)
C30.0233 (13)0.0291 (16)0.0135 (11)0.0096 (13)0.0060 (10)0.0079 (11)
C40.0394 (18)0.0275 (18)0.0242 (14)−0.0007 (15)−0.0117 (13)0.0069 (13)
C50.050 (2)0.0211 (17)0.0260 (14)−0.0022 (15)−0.0099 (14)0.0078 (13)
C60.0339 (15)0.0229 (16)0.0145 (11)0.0078 (13)0.0009 (11)0.0059 (11)
C70.0423 (19)0.042 (2)0.0264 (15)−0.0108 (17)−0.0125 (14)0.0158 (15)
C80.0414 (19)0.041 (2)0.0341 (17)−0.0128 (17)−0.0065 (15)0.0236 (17)
C90.0363 (16)0.0221 (16)0.0147 (12)0.0023 (13)−0.0018 (11)0.0056 (11)
C100.0196 (13)0.0215 (15)0.0164 (11)0.0066 (12)0.0010 (10)0.0060 (11)
C110.0234 (13)0.0131 (13)0.0145 (11)0.0014 (11)−0.0009 (10)0.0039 (10)
C120.0328 (15)0.0282 (17)0.0199 (12)0.0147 (14)0.0086 (12)0.0139 (12)
C130.0277 (14)0.0196 (15)0.0165 (12)0.0080 (12)0.0024 (10)0.0087 (11)
C140.0261 (14)0.0264 (16)0.0232 (13)0.0142 (13)0.0056 (11)0.0106 (12)
C150.0299 (15)0.0252 (16)0.0186 (12)0.0124 (13)0.0076 (11)0.0090 (12)
O120.0275 (11)0.0397 (15)0.0333 (11)−0.0039 (11)−0.0022 (9)0.0064 (11)
O130.0216 (12)0.067 (2)0.0594 (16)0.0098 (13)−0.0010 (11)−0.0214 (15)
O140.0631 (19)0.052 (2)0.0439 (15)−0.0218 (16)−0.0011 (13)0.0059 (14)
Er1—O112.317 (2)C1—C21.531 (3)
Er1—O2i2.3415 (18)C2—H2B0.9700
Er1—O12.3437 (19)C2—H2A0.9700
Er1—O102.368 (2)C3—C81.366 (4)
Er1—O5ii2.381 (2)C3—C41.373 (4)
Er1—O82.3996 (18)C4—C51.383 (4)
Er1—O5iii2.4684 (19)C4—H4A0.9300
Er1—O72.4864 (19)C5—C61.376 (4)
Er1—O6iii2.529 (2)C5—H5A0.9300
Er1—C112.798 (2)C6—C71.366 (5)
Er1—C10iii2.859 (3)C7—C81.403 (4)
Er1—Er1i3.8505 (13)C7—H7A0.9300
O1—C11.240 (3)C8—H8A0.9300
O2—C11.260 (3)C9—C101.505 (3)
O2—Er1i2.3415 (18)C9—H9B0.9700
O3—C31.392 (3)C9—H9A0.9700
O3—C21.425 (3)C10—Er1iv2.859 (3)
O4—C61.388 (3)C11—C121.506 (3)
O4—C91.417 (3)C12—H12B0.9700
O5—C101.281 (3)C12—H12A0.9700
O5—Er1ii2.381 (2)C13—C141.384 (4)
O5—Er1iv2.4684 (19)C13—C151.388 (4)
O6—C101.237 (4)C14—C15v1.388 (3)
O6—Er1iv2.529 (2)C14—H14A0.9300
O7—C111.260 (3)C15—C14v1.388 (3)
O8—C111.254 (3)C15—H15A0.9300
O9—C131.378 (3)O12—H12D0.8176
O9—C121.411 (3)O12—H12C0.8196
O10—H10D0.8194O13—H13D0.8221
O10—H10C0.8213O13—H13C0.8190
O11—H11D0.8212O14—H14C0.8180
O11—H11C0.8194O14—H14D0.8188
O11—Er1—O2i140.01 (8)C10—O6—Er1iv92.30 (16)
O11—Er1—O169.84 (8)C11—O7—Er190.52 (15)
O2i—Er1—O1139.47 (7)C11—O8—Er194.74 (14)
O11—Er1—O1071.00 (8)C13—O9—C12114.6 (2)
O2i—Er1—O1084.46 (8)Er1—O10—H10D128.3
O1—Er1—O10135.94 (7)Er1—O10—H10C124.8
O11—Er1—O5ii141.78 (7)H10D—O10—H10C106.9
O2i—Er1—O5ii74.46 (7)Er1—O11—H11D130.0
O1—Er1—O5ii71.96 (7)Er1—O11—H11C124.3
O10—Er1—O5ii142.81 (7)H11D—O11—H11C105.6
O11—Er1—O882.71 (8)O1—C1—O2127.0 (2)
O2i—Er1—O8125.12 (6)O1—C1—C2118.6 (2)
O1—Er1—O874.50 (7)O2—C1—C2114.3 (2)
O10—Er1—O881.33 (8)O3—C2—C1113.5 (2)
O5ii—Er1—O886.19 (7)O3—C2—H2B108.9
O11—Er1—O5iii96.38 (8)C1—C2—H2B108.9
O2i—Er1—O5iii74.53 (6)O3—C2—H2A108.9
O1—Er1—O5iii75.37 (6)C1—C2—H2A108.9
O10—Er1—O5iii128.65 (7)H2B—C2—H2A107.7
O5ii—Er1—O5iii74.90 (7)C8—C3—C4119.4 (2)
O8—Er1—O5iii148.16 (7)C8—C3—O3124.3 (3)
O11—Er1—O7123.14 (8)C4—C3—O3116.3 (3)
O2i—Er1—O772.14 (6)C3—C4—C5120.6 (3)
O1—Er1—O7119.42 (7)C3—C4—H4A119.7
O10—Er1—O768.62 (7)C5—C4—H4A119.7
O5ii—Er1—O775.81 (7)C6—C5—C4120.1 (3)
O8—Er1—O753.28 (6)C6—C5—H5A120.0
O5iii—Er1—O7140.25 (6)C4—C5—H5A120.0
O11—Er1—O6iii72.43 (8)C7—C6—C5119.6 (3)
O2i—Er1—O6iii71.57 (7)C7—C6—O4124.5 (3)
O1—Er1—O6iii108.94 (7)C5—C6—O4115.8 (3)
O10—Er1—O6iii77.05 (8)C6—C7—C8120.0 (3)
O5ii—Er1—O6iii122.41 (7)C6—C7—H7A120.0
O8—Er1—O6iii151.20 (7)C8—C7—H7A120.0
O5iii—Er1—O6iii52.04 (7)C3—C8—C7120.2 (3)
O7—Er1—O6iii131.64 (7)C3—C8—H8A119.9
O11—Er1—C11103.21 (9)C7—C8—H8A119.9
O2i—Er1—C1198.81 (7)O4—C9—C10109.7 (2)
O1—Er1—C1197.32 (7)O4—C9—H9B109.7
O10—Er1—C1172.86 (8)C10—C9—H9B109.7
O5ii—Er1—C1180.41 (7)O4—C9—H9A109.7
O8—Er1—C1126.52 (7)C10—C9—H9A109.7
O5iii—Er1—C11155.31 (7)H9B—C9—H9A108.2
O7—Er1—C1126.77 (7)O6—C10—O5121.1 (2)
O6iii—Er1—C11149.19 (7)O6—C10—C9122.2 (2)
O11—Er1—C10iii85.37 (9)O5—C10—C9116.7 (3)
O2i—Er1—C10iii69.14 (7)O6—C10—Er1iv62.09 (14)
O1—Er1—C10iii94.05 (7)O5—C10—Er1iv59.45 (13)
O10—Er1—C10iii102.16 (8)C9—C10—Er1iv170.90 (19)
O5ii—Er1—C10iii98.49 (8)O8—C11—O7121.4 (2)
O8—Er1—C10iii165.74 (7)O8—C11—C12122.0 (2)
O5iii—Er1—C10iii26.56 (7)O7—C11—C12116.5 (2)
O7—Er1—C10iii140.92 (7)O8—C11—Er158.74 (12)
O6iii—Er1—C10iii25.61 (7)O7—C11—Er162.71 (12)
C11—Er1—C10iii167.59 (7)C12—C11—Er1178.07 (19)
O11—Er1—Er1i123.86 (7)O9—C12—C11110.6 (2)
O2i—Er1—Er1i70.32 (5)O9—C12—H12B109.5
O1—Er1—Er1i69.30 (5)C11—C12—H12B109.5
O10—Er1—Er1i153.26 (5)O9—C12—H12A109.5
O5ii—Er1—Er1i38.24 (4)C11—C12—H12A109.5
O8—Er1—Er1i120.23 (6)H12B—C12—H12A108.1
O5iii—Er1—Er1i36.66 (5)O9—C13—C14115.1 (2)
O7—Er1—Er1i109.95 (5)O9—C13—C15124.5 (2)
O6iii—Er1—Er1i86.39 (6)C14—C13—C15120.3 (2)
C11—Er1—Er1i118.65 (6)C13—C14—C15v120.2 (2)
C10iii—Er1—Er1i61.18 (7)C13—C14—H14A119.9
C1—O1—Er1137.57 (17)C15v—C14—H14A119.9
C1—O2—Er1i135.37 (17)C13—C15—C14v119.5 (2)
C3—O3—C2119.0 (2)C13—C15—H15A120.2
C6—O4—C9116.5 (2)C14v—C15—H15A120.2
C10—O5—Er1ii146.22 (17)H12D—O12—H12C116.6
C10—O5—Er1iv93.99 (16)H13D—O13—H13C108.2
Er1ii—O5—Er1iv105.10 (7)H14C—O14—H14D124.5
D—H···AD—HH···AD···AD—H···A
O10—H10D···O7vi0.822.092.880 (4)163
O10—H10C···O120.821.972.732 (4)154
O11—H11D···O130.821.822.634 (4)173
O11—H11C···O120.821.922.709 (4)161
O12—H12D···O8vii0.822.002.798 (4)167
O12—H12C···O14iii0.821.972.780 (4)172
O13—H13D···O7viii0.822.122.872 (4)151
O13—H13C···O30.822.032.804 (4)157
O14—H14C···O60.822.172.874 (4)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O10—H10D⋯O7i 0.822.092.880 (4)163
O10—H10C⋯O120.821.972.732 (4)154
O11—H11D⋯O130.821.822.634 (4)173
O11—H11C⋯O120.821.922.709 (4)161
O12—H12D⋯O8ii 0.822.002.798 (4)167
O12—H12C⋯O14iii 0.821.972.780 (4)172
O13—H13D⋯O7iv 0.822.122.872 (4)151
O13—H13C⋯O30.822.032.804 (4)157
O14—H14C⋯O60.822.172.874 (4)144

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  From molecules to crystal engineering: supramolecular isomerism and polymorphism in network solids.

Authors:  B Moulton; M J Zaworotko
Journal:  Chem Rev       Date:  2001-06       Impact factor: 60.622

2.  Porous lanthanide-organic framework with zeolite-like topology.

Authors:  Tapas Kumar Maji; Golam Mostafa; Ho-Chol Chang; Susumu Kitagawa
Journal:  Chem Commun (Camb)       Date:  2005-03-24       Impact factor: 6.222

3.  Preparation, adsorption properties, and catalytic activity of 3D porous metal-organic frameworks composed of cubic building blocks and alkali-metal ions.

Authors:  Ru-Qiang Zou; Hiroaki Sakurai; Qiang Xu
Journal:  Angew Chem Int Ed Engl       Date:  2006-04-10       Impact factor: 15.336

4.  An interweaving MOF with high hydrogen uptake.

Authors:  Daofeng Sun; Shengqian Ma; Yanxiong Ke; David J Collins; Hong-Cai Zhou
Journal:  J Am Chem Soc       Date:  2006-03-29       Impact factor: 15.419

5.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

6.  Metal carboxylates with open architectures.

Authors:  C N R Rao; Srinivasan Natarajan; R Vaidhyanathan
Journal:  Angew Chem Int Ed Engl       Date:  2004-03-12       Impact factor: 15.336

  6 in total

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