Literature DB >> 21578576

trans-Bis(1-cyclo-hexyl-pyrrolidin-2-one)dinitratopalladium(II).

Yuya Takahashi1, Yasuhisa Ikeda.   

Abstract

In the title compound, [Pd(NO(3))(2)(C(10)H(17)NO)(2)], the Pd(II) centre is located on an inversion center and is coordinated in a square-planar geometry by two O atoms of the monodentate nitrate groups and two carbonyl O atoms of the 1-cyclo-hexyl-pyrrolidin-2-one ligands.

Entities:  

Year:  2009        PMID: 21578576      PMCID: PMC2971949          DOI: 10.1107/S1600536809045930

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to ambidentate ligands, see: Fairlie & Taube (1985 ▶); Rack et al. (2003 ▶); Sigel & Martin (1982 ▶). For amide complexes of metal ions, see: Anget et al. (1990 ▶); Curtis et al. (1983 ▶). Pankratov et al. (2004 ▶); Wayland & Schramm (1969 ▶); Rheingold & Staley (1988 ▶). For the structures of ambidentate ligand complexes of PdII, see: Johnson et al. (1981 ▶); Johansson et al. (2001 ▶); Langs et al. (1967 ▶). For the structures of nitrate complexes of PdII, see: Bennett et al. (1967 ▶); Adrian et al. (2006 ▶); Rath et al. (1999 ▶); Bray et al. (2005 ▶); Cerdà et al. (2006 ▶); Gromilov et al. (2008 ▶); Khranenko et al. (2007 ▶); Laligant et al. (1991 ▶). For a discussion on the relationship between bond lengths and ligand donicities, see: Gutmann (1967 ▶, 1968 ▶); Koshino et al. (2005 ▶).

Experimental

Crystal data

[Pd(NO3)2(C10H17NO)2] M = 564.91 Triclinic, a = 7.6431 (5) Å b = 9.8892 (8) Å c = 10.1118 (7) Å α = 60.8650 (19)° β = 66.057 (2)° γ = 68.845 (2)° V = 597.24 (7) Å3 Z = 1 Mo Kα radiation μ = 0.83 mm−1 T = 173 K 0.78 × 0.41 × 0.07 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: numerical (ABSCOR; Higashi, 1999 ▶) T min = 0.754, T max = 0.943 5836 measured reflections 2696 independent reflections 2662 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.020 wR(F 2) = 0.052 S = 1.07 2696 reflections 152 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.93 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2006 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶) and DIRDIF99 (Beurskens et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: CrystalStructure. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809045930/br2124sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809045930/br2124Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Pd(NO3)2(C10H17NO)2]Z = 1
Mr = 564.91F(000) = 292.00
Triclinic, P1Dx = 1.571 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71075 Å
a = 7.6431 (5) ÅCell parameters from 5845 reflections
b = 9.8892 (8) Åθ = 3.3–27.5°
c = 10.1118 (7) ŵ = 0.83 mm1
α = 60.8650 (19)°T = 173 K
β = 66.057 (2)°Platelet, brown
γ = 68.845 (2)°0.78 × 0.41 × 0.07 mm
V = 597.24 (7) Å3
Rigaku R-AXIS RAPID diffractometer2662 reflections with F2 > 2σ(F2)
Detector resolution: 10.00 pixels mm-1Rint = 0.021
ω scansθmax = 27.5°
Absorption correction: numerical (ABSCOR; Higashi, 1999)h = −9→9
Tmin = 0.754, Tmax = 0.943k = −12→12
5836 measured reflectionsl = −11→13
2696 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.020Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.052H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0294P)2 + 0.1351P] where P = (Fo2 + 2Fc2)/3
2696 reflections(Δ/σ)max = 0.001
152 parametersΔρmax = 0.32 e Å3
Primary atom site location: structure-invariant direct methodsΔρmin = −0.93 e Å3
xyzUiso*/Ueq
Pd(1)1.00001.00000.00000.02155 (5)
O(1)0.92669 (15)0.93354 (13)0.23446 (12)0.0268 (2)
O(2)1.18410 (17)1.12278 (13)−0.03171 (13)0.0308 (2)
O(3)0.98979 (19)1.33981 (14)−0.14453 (18)0.0454 (3)
O(4)1.25913 (19)1.34980 (16)−0.12849 (17)0.0447 (3)
N(1)1.14168 (19)1.27768 (16)−0.10479 (15)0.0289 (2)
N(2)0.99744 (17)0.78446 (13)0.46810 (13)0.0201 (2)
C(1)1.04947 (19)0.84244 (15)0.31243 (15)0.0200 (2)
C(2)1.2637 (2)0.78476 (17)0.24741 (16)0.0246 (2)
C(3)1.3405 (2)0.70029 (19)0.39282 (17)0.0283 (3)
C(4)1.1591 (2)0.6721 (2)0.53523 (17)0.0308 (3)
C(5)0.79357 (19)0.80910 (15)0.56480 (15)0.0197 (2)
C(6)0.7016 (2)0.67022 (18)0.61976 (19)0.0284 (3)
C(7)0.4882 (2)0.6965 (2)0.7192 (2)0.0320 (3)
C(8)0.4713 (2)0.7307 (2)0.85611 (18)0.0331 (3)
C(9)0.5632 (2)0.8697 (2)0.79808 (19)0.0329 (3)
C(10)0.7782 (2)0.8389 (2)0.70401 (18)0.0288 (3)
H(1)1.43090.59870.39430.034*
H(2)1.41060.76710.39300.034*
H(3)0.71850.90560.49660.024*
H(4)1.14270.56170.58140.037*
H(5)1.16700.69470.61760.037*
H(6)0.83530.93140.66500.035*
H(7)0.85270.74580.77330.035*
H(8)0.55430.88690.88940.040*
H(9)0.49070.96660.73040.040*
H(10)0.33160.75440.91340.040*
H(11)0.53710.63590.93070.040*
H(12)0.40910.78650.65150.038*
H(13)0.43530.60110.76120.038*
H(14)1.32860.87420.16650.030*
H(15)1.28470.71080.20030.030*
H(16)0.77720.57180.68330.034*
H(17)0.70680.65780.52680.034*
U11U22U33U12U13U23
Pd(1)0.02369 (9)0.02268 (9)0.01332 (8)−0.00108 (5)−0.00923 (5)−0.00290 (6)
O(1)0.0252 (5)0.0317 (5)0.0153 (4)0.0013 (4)−0.0097 (3)−0.0052 (4)
O(2)0.0337 (5)0.0282 (5)0.0285 (5)−0.0043 (4)−0.0169 (4)−0.0047 (4)
O(3)0.0352 (6)0.0284 (5)0.0613 (8)−0.0068 (4)−0.0266 (6)0.0010 (5)
O(4)0.0404 (7)0.0437 (7)0.0463 (7)−0.0220 (5)−0.0156 (5)−0.0031 (6)
N(1)0.0270 (6)0.0299 (6)0.0209 (5)−0.0104 (4)−0.0063 (4)−0.0008 (4)
N(2)0.0224 (5)0.0203 (5)0.0152 (5)−0.0035 (4)−0.0084 (4)−0.0035 (4)
C(1)0.0242 (6)0.0195 (5)0.0162 (5)−0.0047 (4)−0.0083 (4)−0.0049 (4)
C(2)0.0229 (6)0.0275 (6)0.0181 (6)−0.0022 (5)−0.0075 (5)−0.0059 (5)
C(3)0.0241 (7)0.0327 (7)0.0221 (6)−0.0021 (5)−0.0110 (5)−0.0055 (5)
C(4)0.0262 (7)0.0367 (7)0.0188 (6)−0.0018 (5)−0.0123 (5)−0.0017 (5)
C(5)0.0228 (6)0.0197 (5)0.0151 (5)−0.0050 (4)−0.0067 (4)−0.0042 (4)
C(6)0.0278 (7)0.0286 (7)0.0356 (8)−0.0083 (5)−0.0092 (5)−0.0160 (6)
C(7)0.0262 (7)0.0341 (7)0.0388 (8)−0.0127 (5)−0.0082 (6)−0.0132 (6)
C(8)0.0292 (7)0.0403 (8)0.0232 (7)−0.0150 (6)−0.0022 (5)−0.0064 (6)
C(9)0.0331 (8)0.0436 (8)0.0268 (7)−0.0137 (6)−0.0004 (6)−0.0199 (7)
C(10)0.0311 (7)0.0397 (8)0.0242 (7)−0.0169 (6)−0.0014 (5)−0.0174 (6)
Pd(1)—O(1)2.0092 (11)C(9)—C(10)1.533 (2)
Pd(1)—O(1)i2.0092 (11)C(2)—H(14)0.990
Pd(1)—O(2)2.0112 (15)C(2)—H(15)0.990
Pd(1)—O(2)i2.0112 (15)C(3)—H(1)0.990
O(1)—C(1)1.2699 (17)C(3)—H(2)0.990
O(2)—N(1)1.3158 (16)C(4)—H(4)0.990
O(3)—N(1)1.229 (2)C(4)—H(5)0.990
O(4)—N(1)1.222 (2)C(5)—H(3)1.000
N(2)—C(1)1.3200 (17)C(6)—H(16)0.990
N(2)—C(4)1.4754 (19)C(6)—H(17)0.990
N(2)—C(5)1.4713 (15)C(7)—H(12)0.990
C(1)—C(2)1.5020 (17)C(7)—H(13)0.990
C(2)—C(3)1.535 (2)C(8)—H(10)0.990
C(3)—C(4)1.5304 (18)C(8)—H(11)0.990
C(5)—C(6)1.525 (2)C(9)—H(8)0.990
C(5)—C(10)1.525 (2)C(9)—H(9)0.990
C(6)—C(7)1.5351 (19)C(10)—H(6)0.990
C(7)—C(8)1.525 (3)C(10)—H(7)0.990
C(8)—C(9)1.518 (3)
O(1)—Pd(1)—O(1)i180.00 (7)C(4)—C(3)—H(2)110.7
O(1)—Pd(1)—O(2)89.93 (5)H(1)—C(3)—H(2)108.8
O(1)—Pd(1)—O(2)i90.07 (5)N(2)—C(4)—H(4)111.1
O(1)i—Pd(1)—O(2)90.07 (5)N(2)—C(4)—H(5)111.1
O(1)i—Pd(1)—O(2)i89.93 (5)C(3)—C(4)—H(4)111.1
O(2)—Pd(1)—O(2)i180.00 (6)C(3)—C(4)—H(5)111.1
Pd(1)—O(1)—C(1)121.33 (8)H(4)—C(4)—H(5)109.0
Pd(1)—O(2)—N(1)117.47 (11)N(2)—C(5)—H(3)107.6
O(2)—N(1)—O(3)118.89 (17)C(6)—C(5)—H(3)107.7
O(2)—N(1)—O(4)116.54 (14)C(10)—C(5)—H(3)107.6
O(3)—N(1)—O(4)124.58 (13)C(5)—C(6)—H(16)109.5
C(1)—N(2)—C(4)112.87 (10)C(5)—C(6)—H(17)109.5
C(1)—N(2)—C(5)123.33 (12)C(7)—C(6)—H(16)109.5
C(4)—N(2)—C(5)123.11 (10)C(7)—C(6)—H(17)109.5
O(1)—C(1)—N(2)121.72 (11)H(16)—C(6)—H(17)108.1
O(1)—C(1)—C(2)127.06 (11)C(6)—C(7)—H(12)109.4
N(2)—C(1)—C(2)111.21 (11)C(6)—C(7)—H(13)109.4
C(1)—C(2)—C(3)103.45 (11)C(8)—C(7)—H(12)109.4
C(2)—C(3)—C(4)105.44 (12)C(8)—C(7)—H(13)109.4
N(2)—C(4)—C(3)103.45 (10)H(12)—C(7)—H(13)108.0
N(2)—C(5)—C(6)110.78 (12)C(7)—C(8)—H(10)109.4
N(2)—C(5)—C(10)111.59 (14)C(7)—C(8)—H(11)109.4
C(6)—C(5)—C(10)111.32 (11)C(9)—C(8)—H(10)109.4
C(5)—C(6)—C(7)110.86 (14)C(9)—C(8)—H(11)109.4
C(6)—C(7)—C(8)111.34 (17)H(10)—C(8)—H(11)108.0
C(7)—C(8)—C(9)111.23 (12)C(8)—C(9)—H(8)109.5
C(8)—C(9)—C(10)110.64 (16)C(8)—C(9)—H(9)109.5
C(5)—C(10)—C(9)109.88 (17)C(10)—C(9)—H(8)109.5
C(1)—C(2)—H(14)111.1C(10)—C(9)—H(9)109.5
C(1)—C(2)—H(15)111.1H(8)—C(9)—H(9)108.1
C(3)—C(2)—H(14)111.1C(5)—C(10)—H(6)109.7
C(3)—C(2)—H(15)111.1C(5)—C(10)—H(7)109.7
H(14)—C(2)—H(15)109.0C(9)—C(10)—H(6)109.7
C(2)—C(3)—H(1)110.7C(9)—C(10)—H(7)109.7
C(2)—C(3)—H(2)110.7H(6)—C(10)—H(7)108.2
C(4)—C(3)—H(1)110.7
O(1)—Pd(1)—O(2)—N(1)−113.91 (10)C(5)—N(2)—C(1)—O(1)4.9 (2)
O(2)—Pd(1)—O(1)—C(1)−66.76 (14)C(5)—N(2)—C(1)—C(2)−174.43 (15)
O(1)—Pd(1)—O(2)i—N(1)i−66.09 (10)C(4)—N(2)—C(5)—C(6)−74.5 (2)
O(2)i—Pd(1)—O(1)—C(1)113.24 (14)C(4)—N(2)—C(5)—C(10)50.2 (2)
O(1)i—Pd(1)—O(2)—N(1)66.09 (10)C(5)—N(2)—C(4)—C(3)−174.89 (17)
O(2)—Pd(1)—O(1)i—C(1)i−113.24 (14)O(1)—C(1)—C(2)—C(3)172.09 (18)
O(1)i—Pd(1)—O(2)i—N(1)i113.91 (10)N(2)—C(1)—C(2)—C(3)−8.6 (2)
O(2)i—Pd(1)—O(1)i—C(1)i66.76 (14)C(1)—C(2)—C(3)—C(4)16.71 (19)
Pd(1)—O(1)—C(1)—N(2)−172.54 (13)C(2)—C(3)—C(4)—N(2)−18.6 (2)
Pd(1)—O(1)—C(1)—C(2)6.7 (2)N(2)—C(5)—C(6)—C(7)−179.40 (13)
Pd(1)—O(2)—N(1)—O(3)2.66 (19)N(2)—C(5)—C(10)—C(9)178.01 (11)
Pd(1)—O(2)—N(1)—O(4)−177.21 (12)C(6)—C(5)—C(10)—C(9)−57.65 (14)
C(1)—N(2)—C(4)—C(3)14.4 (2)C(10)—C(5)—C(6)—C(7)55.81 (17)
C(4)—N(2)—C(1)—O(1)175.65 (17)C(5)—C(6)—C(7)—C(8)−54.16 (16)
C(4)—N(2)—C(1)—C(2)−3.7 (2)C(6)—C(7)—C(8)—C(9)55.18 (16)
C(1)—N(2)—C(5)—C(6)95.31 (17)C(7)—C(8)—C(9)—C(10)−57.20 (18)
C(1)—N(2)—C(5)—C(10)−140.05 (16)C(8)—C(9)—C(10)—C(5)58.08 (16)
Table 1

Selected bond lengths (Å)

Pd(1)—O(1)2.0092 (11)
Pd(1)—O(2)2.0112 (15)
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