Literature DB >> 21578560

A polymorph of diaqua-bis(pyrazine-2-carboxyl-ato-κN,O)copper(II).

Guan-Hua Wang1, Ren-Ling He, Fan-Jin Meng, Ning-Hai Hu, Jing-Wei Xu.   

Abstract

The title compound, [Cu(C(5)H(3)N(2)O(2))(2)(H(2)O)(2)], is a new polymorph of the previously reported compound [Klein et al. (1982 ▶). Inorg. Chem.21, 1891-1897]. The Cu(II) atom, lying on an inversion center, is coordinated by two N atoms and two O atoms from two pyrazine-2-carboxyl-ate ligands and by two water mol-ecules in a distorted octa-hedral geometry with the water mol-ecules occupying the axial sites. Inter-molecular O-H⋯O, O-H⋯N and C-H⋯O hydrogen bonds connect the complex mol-ecules into a two-dimensional layer parallel to (10), whereas the previously reported polymorph exhibits a three-dimensional hydrogen-bonded network.

Entities:  

Year:  2009        PMID: 21578560      PMCID: PMC2971785          DOI: 10.1107/S1600536809045371

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to metal complexes of pyrazine­carboxyl­ates, see: Dong et al. (2000 ▶); Kubota et al. (2006 ▶); Luo et al. (2004 ▶); Ptasiewicz-Bak et al. (1995 ▶). For the previously reported polymorph, see: Klein et al. (1982 ▶). For a related structure, see: Chutia et al. (2009 ▶).

Experimental

Crystal data

[Cu(C5H3N2O2)2(H2O)2] M = 345.76 Monoclinic, a = 6.7066 (12) Å b = 7.9041 (14) Å c = 12.030 (2) Å β = 105.036 (2)° V = 615.88 (19) Å3 Z = 2 Mo Kα radiation μ = 1.81 mm−1 T = 293 K 0.29 × 0.25 × 0.20 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (; Sheldrick, 1996 ▶) T min = 0.626, T max = 0.711 3322 measured reflections 1212 independent reflections 1119 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.071 S = 1.10 1212 reflections 98 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809045371/is2480sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809045371/is2480Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C5H3N2O2)2(H2O)2]F(000) = 350
Mr = 345.76Dx = 1.864 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2148 reflections
a = 6.7066 (12) Åθ = 3.1–26.1°
b = 7.9041 (14) ŵ = 1.81 mm1
c = 12.030 (2) ÅT = 293 K
β = 105.036 (2)°Block, blue
V = 615.88 (19) Å30.29 × 0.25 × 0.20 mm
Z = 2
Bruker SMART APEX CCD diffractometer1212 independent reflections
Radiation source: sealed tube1119 reflections with I > 2σ(I)
graphiteRint = 0.014
φ and ω scansθmax = 26.1°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.626, Tmax = 0.711k = −8→9
3322 measured reflectionsl = −7→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.024H-atom parameters constrained
wR(F2) = 0.071w = 1/[σ2(Fo2) + (0.0427P)2 + 0.1736P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
1212 reflectionsΔρmax = 0.24 e Å3
98 parametersΔρmin = −0.27 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.015 (3)
xyzUiso*/Ueq
Cu10.00000.50001.00000.03498 (16)
O1−0.0727 (2)0.61455 (15)0.85150 (10)0.0366 (3)
O2−0.1196 (2)0.56084 (18)0.66400 (11)0.0410 (3)
N10.0637 (2)0.30822 (17)0.90970 (11)0.0281 (3)
N20.0994 (2)0.0660 (2)0.74999 (14)0.0379 (4)
C10.1310 (3)0.1525 (2)0.94293 (15)0.0323 (4)
H10.16850.12521.02080.039*
C20.1451 (3)0.0321 (2)0.86246 (19)0.0388 (4)
H20.1880−0.07650.88740.047*
C30.0352 (3)0.2226 (2)0.71834 (15)0.0334 (4)
H30.00330.25090.64070.040*
C40.0146 (2)0.3439 (2)0.79692 (14)0.0277 (4)
C5−0.0665 (3)0.5207 (2)0.76592 (16)0.0299 (4)
O1W0.3669 (2)0.63676 (18)1.04173 (12)0.0483 (4)
H1A0.35510.72071.07960.058*
H1B0.46360.57881.07810.058*
U11U22U33U12U13U23
Cu10.0529 (2)0.0279 (2)0.0235 (2)0.00894 (12)0.00891 (15)−0.00016 (10)
O10.0516 (8)0.0285 (6)0.0285 (7)0.0070 (5)0.0085 (5)0.0008 (5)
O20.0550 (8)0.0383 (7)0.0252 (7)0.0039 (6)0.0022 (6)0.0042 (6)
N10.0298 (7)0.0275 (7)0.0256 (7)0.0002 (5)0.0050 (5)0.0003 (6)
N20.0438 (9)0.0331 (8)0.0380 (9)0.0012 (7)0.0127 (7)−0.0059 (7)
C10.0343 (9)0.0327 (9)0.0287 (9)0.0030 (7)0.0059 (7)0.0043 (7)
C20.0417 (10)0.0292 (9)0.0468 (12)0.0066 (7)0.0139 (9)0.0022 (8)
C30.0356 (9)0.0352 (9)0.0287 (9)−0.0023 (7)0.0073 (7)−0.0023 (7)
C40.0271 (8)0.0292 (8)0.0258 (8)−0.0022 (6)0.0049 (6)−0.0005 (6)
C50.0299 (8)0.0287 (8)0.0292 (10)−0.0006 (6)0.0039 (7)0.0010 (7)
O1W0.0578 (9)0.0406 (8)0.0456 (8)0.0054 (6)0.0116 (7)−0.0037 (6)
Cu1—O11.9486 (12)C1—C21.378 (3)
Cu1—N11.9753 (14)C1—H10.9300
Cu1—O1W2.6143 (14)C2—H20.9300
O1—C51.279 (2)C3—C41.379 (2)
O2—C51.227 (2)C3—H30.9300
N1—C11.336 (2)C4—C51.510 (2)
N1—C41.340 (2)O1W—H1A0.82
N2—C31.333 (3)O1W—H1B0.82
N2—C21.335 (3)
O1i—Cu1—O1180.0N1—C1—H1119.8
O1i—Cu1—N1i83.73 (5)C2—C1—H1119.8
O1—Cu1—N1i96.27 (5)N2—C2—C1122.29 (18)
O1i—Cu1—N196.27 (5)N2—C2—H2118.9
O1—Cu1—N183.73 (5)C1—C2—H2118.9
N1i—Cu1—N1180.0N2—C3—C4122.17 (16)
O1W—Cu1—N195.50 (5)N2—C3—H3118.9
O1W—Cu1—O189.03 (5)C4—C3—H3118.9
O1W—Cu1—N1i84.50 (5)N1—C4—C3120.37 (16)
O1W—Cu1—O1i90.97 (5)N1—C4—C5115.01 (15)
C5—O1—Cu1114.57 (11)C3—C4—C5124.60 (16)
C1—N1—C4118.16 (14)O2—C5—O1126.37 (16)
C1—N1—Cu1130.31 (12)O2—C5—C4118.61 (16)
C4—N1—Cu1111.33 (11)O1—C5—C4115.02 (15)
C3—N2—C2116.61 (16)H1A—O1W—H1B109
N1—C1—C2120.36 (16)
D—H···AD—HH···AD···AD—H···A
O1W—H1A···O2ii0.821.992.796 (2)168
O1W—H1B···N2iii0.822.333.041 (2)145
C1—H1···O2iii0.932.423.226 (2)144
Table 1

Selected bond lengths (Å)

Cu1—O11.9486 (12)
Cu1—N11.9753 (14)
Cu1—O1W 2.6143 (14)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1W—H1A⋯O2i 0.821.992.796 (2)168
O1W—H1B⋯N2ii 0.822.333.041 (2)145
C1—H1⋯O2ii 0.932.423.226 (2)144

Symmetry codes: (i) ; (ii) .

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Journal:  Angew Chem Int Ed Engl       Date:  2006-07-24       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Metal-containing ligands for mixed-metal polymers: novel Cu(II)-Ag(I) mixed-metal coordination polymers generated from [Cu(2-methylpyrazine-5-carboxylate)2(H2O)].3H2O and silver(I) salts.

Authors:  Y B Dong; M D Smith; H C zur Loye
Journal:  Inorg Chem       Date:  2000-05-01       Impact factor: 5.165

4.  Synthesis and characterization of ReO4-containing microporous and open framework structures.

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Journal:  Inorg Chem       Date:  2004-09-06       Impact factor: 5.165

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