Literature DB >> 21578556

Aqua-{N-[1-(2-oxidophen-yl)ethyl-idene]-l-serinato}copper(II) monohydrate.

Gan-Qing Zhao, Da-Ming Tian, Yong-Jun Han, Ling-Wei Xue, Qin-Long Peng.   

Abstract

In the title compound, [Cu(C(11)H(11)NO(4))(H(2)O)]·H(2)O, each Cu(II) ion is four-coordinated by one N and two O atoms from the tridentate Schiff base ligand, and by one O atom from the coordinated water mol-ecule in a distorted square-planar geometry. Inter-molecular O-H⋯O hydrogen bonds link complex mol-ecules and solvent water mol-ecules into flattened columns propagated in [100].

Entities:  

Year:  2009        PMID: 21578556      PMCID: PMC2972012          DOI: 10.1107/S1600536809045292

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the chemistry of transition metal complexes with Schiff base ligands composed of salicylaldehyde, 2-formyl­pyridine or their analogues, and α-amino acids, see: Casella & Guillotti (1983 ▶); Vigato & Tamburini (2004 ▶); Ganguly et al. (2008 ▶). For related structures, see: Usman et al. (2003 ▶); Parekh et al. (2006 ▶); Basu Baul et al. (2007 ▶). For details of the synthesis, see: Plesch et al. (1997 ▶).

Experimental

Crystal data

[Cu(C11H11NO4)(H2O)H2O M = 320.78 Orthorhombic, a = 5.6701 (9) Å b = 13.788 (2) Å c = 15.536 (2) Å V = 1214.6 (3) Å3 Z = 4 Mo Kα radiation μ = 1.82 mm−1 T = 296 K 0.25 × 0.20 × 0.20 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.659, T max = 0.712 6314 measured reflections 2149 independent reflections 2038 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.022 wR(F 2) = 0.053 S = 1.09 2149 reflections 176 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.24 e Å−3 Absolute structure: Flack (1983 ▶), 869 Friedel pairs Flack parameter: 0.011 (13) Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809045292/cv2643sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809045292/cv2643Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C11H11NO4)(H2O)]·H2OF(000) = 660
Mr = 320.78Dx = 1.754 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3823 reflections
a = 5.6701 (9) Åθ = 2.6–27.3°
b = 13.788 (2) ŵ = 1.82 mm1
c = 15.536 (2) ÅT = 296 K
V = 1214.6 (3) Å3Block, dark green
Z = 40.25 × 0.20 × 0.20 mm
Bruker SMART APEXII CCD diffractometer2149 independent reflections
Radiation source: fine-focus sealed tube2038 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 25.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −2→6
Tmin = 0.659, Tmax = 0.712k = −16→16
6314 measured reflectionsl = −18→18
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.022w = 1/[σ2(Fo2) + (0.0174P)2 + 0.2008P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.053(Δ/σ)max = 0.001
S = 1.09Δρmax = 0.21 e Å3
2149 reflectionsΔρmin = −0.24 e Å3
176 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0120 (11)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 869 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.011 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.18718 (6)0.09862 (2)0.532935 (19)0.02947 (11)
C10.5839 (5)−0.02296 (17)0.50130 (16)0.0286 (6)
C20.7793 (5)−0.04620 (19)0.44924 (16)0.0378 (7)
H20.8084−0.00920.40030.045*
C30.9287 (5)−0.12205 (18)0.46860 (19)0.0390 (6)
H31.0554−0.13600.43260.047*
C40.8899 (5)−0.17732 (19)0.54164 (19)0.0382 (7)
H40.9903−0.22840.55530.046*
C50.7019 (6)−0.15591 (18)0.59347 (16)0.0340 (6)
H50.6780−0.19330.64250.041*
C60.5428 (5)−0.07988 (16)0.57613 (15)0.0268 (6)
C70.3496 (5)−0.06175 (17)0.63784 (15)0.0283 (6)
C80.0332 (5)0.03559 (19)0.69616 (16)0.0304 (6)
H8−0.0484−0.02380.71390.036*
C9−0.1447 (4)0.10765 (19)0.66029 (18)0.0354 (6)
C100.3232 (7)−0.1327 (2)0.71079 (18)0.0469 (8)
H10A0.4539−0.12600.74960.070*
H10B0.3200−0.19760.68830.070*
H10C0.1788−0.11990.74100.070*
C110.1466 (5)0.0833 (2)0.77456 (16)0.0393 (7)
H11A0.02810.09310.81870.047*
H11B0.26710.04080.79780.047*
N10.2116 (4)0.01209 (14)0.63046 (12)0.0247 (4)
O10.4525 (3)0.05113 (12)0.47659 (11)0.0372 (4)
O2−0.0953 (4)0.14741 (13)0.58792 (13)0.0409 (5)
O3−0.3178 (4)0.12658 (15)0.70381 (15)0.0552 (6)
O40.2492 (3)0.17369 (14)0.75275 (13)0.0412 (5)
H4A0.38690.16540.73830.062*
O1W0.1373 (4)0.18950 (14)0.43700 (13)0.0523 (6)
H1WA−0.00260.18970.42360.078*
H1WB0.19230.24660.43180.078*
O2W0.2141 (4)0.33399 (16)0.63903 (14)0.0550 (6)
H2WA0.20360.27760.66070.066*
H2WB0.10450.35690.60770.066*
U11U22U33U12U13U23
Cu10.02747 (17)0.02884 (16)0.03211 (16)0.00077 (15)−0.00322 (15)0.00440 (13)
C10.0274 (14)0.0282 (12)0.0303 (12)−0.0033 (11)−0.0041 (12)−0.0019 (11)
C20.0400 (17)0.0408 (15)0.0324 (14)−0.0022 (13)0.0062 (13)−0.0010 (11)
C30.0339 (15)0.0387 (15)0.0446 (15)0.0005 (12)0.0076 (15)−0.0103 (13)
C40.0327 (15)0.0318 (13)0.0500 (17)0.0059 (12)−0.0027 (14)−0.0036 (14)
C50.0379 (15)0.0273 (12)0.0368 (14)0.0001 (14)−0.0022 (15)−0.0017 (11)
C60.0254 (13)0.0248 (13)0.0302 (12)−0.0027 (11)−0.0013 (11)−0.0041 (10)
C70.0267 (15)0.0286 (12)0.0296 (12)−0.0029 (11)−0.0028 (12)0.0015 (10)
C80.0228 (14)0.0329 (13)0.0354 (14)−0.0055 (12)0.0067 (12)0.0012 (11)
C90.0238 (15)0.0309 (13)0.0517 (16)−0.0047 (13)−0.0008 (13)−0.0103 (14)
C100.0446 (19)0.0500 (16)0.0459 (16)0.0087 (16)0.0081 (17)0.0212 (13)
C110.0340 (17)0.0547 (17)0.0291 (12)−0.0025 (14)0.0084 (12)−0.0040 (13)
N10.0224 (11)0.0263 (10)0.0254 (10)−0.0043 (10)−0.0002 (10)−0.0010 (8)
O10.0353 (10)0.0426 (10)0.0336 (10)0.0061 (9)0.0052 (9)0.0097 (8)
O20.0347 (11)0.0372 (10)0.0509 (12)0.0099 (9)−0.0037 (10)0.0023 (9)
O30.0287 (12)0.0614 (14)0.0754 (15)0.0059 (11)0.0118 (13)−0.0107 (11)
O40.0291 (13)0.0436 (10)0.0508 (12)−0.0034 (8)0.0022 (9)−0.0159 (9)
O1W0.0461 (15)0.0468 (12)0.0639 (13)−0.0085 (10)−0.0166 (11)0.0273 (11)
O2W0.0374 (12)0.0585 (13)0.0690 (14)−0.0080 (12)−0.0080 (12)0.0245 (11)
Cu1—O11.8595 (18)C8—N11.473 (3)
Cu1—N11.9335 (19)C8—C91.522 (4)
Cu1—O21.936 (2)C8—C111.527 (4)
Cu1—O1W1.9677 (18)C8—H80.9800
C1—O11.322 (3)C9—O31.220 (3)
C1—C21.408 (4)C9—O21.282 (3)
C1—C61.422 (3)C10—H10A0.9600
C2—C31.379 (4)C10—H10B0.9600
C2—H20.9300C10—H10C0.9600
C3—C41.385 (4)C11—O41.416 (3)
C3—H30.9300C11—H11A0.9700
C4—C51.368 (4)C11—H11B0.9700
C4—H40.9300O4—H4A0.8200
C5—C61.409 (4)O1W—H1WA0.8200
C5—H50.9300O1W—H1WB0.8502
C6—C71.477 (3)O2W—H2WA0.8500
C7—N11.289 (3)O2W—H2WB0.8500
C7—C101.505 (3)
O1—Cu1—N195.37 (8)C9—C8—C11106.9 (2)
O1—Cu1—O2177.99 (9)N1—C8—H8109.6
N1—Cu1—O285.87 (9)C9—C8—H8109.6
O1—Cu1—O1W89.08 (9)C11—C8—H8109.6
N1—Cu1—O1W175.46 (9)O3—C9—O2124.8 (3)
O2—Cu1—O1W89.66 (9)O3—C9—C8118.0 (3)
O1—C1—C2116.9 (2)O2—C9—C8117.1 (2)
O1—C1—C6124.9 (2)C7—C10—H10A109.5
C2—C1—C6118.2 (2)C7—C10—H10B109.5
C3—C2—C1122.0 (2)H10A—C10—H10B109.5
C3—C2—H2119.0C7—C10—H10C109.5
C1—C2—H2119.0H10A—C10—H10C109.5
C2—C3—C4119.9 (3)H10B—C10—H10C109.5
C2—C3—H3120.1O4—C11—C8111.2 (2)
C4—C3—H3120.1O4—C11—H11A109.4
C5—C4—C3119.2 (2)C8—C11—H11A109.4
C5—C4—H4120.4O4—C11—H11B109.4
C3—C4—H4120.4C8—C11—H11B109.4
C4—C5—C6123.1 (2)H11A—C11—H11B108.0
C4—C5—H5118.4C7—N1—C8121.9 (2)
C6—C5—H5118.4C7—N1—Cu1126.91 (17)
C5—C6—C1117.5 (2)C8—N1—Cu1110.98 (15)
C5—C6—C7118.5 (2)C1—O1—Cu1126.28 (16)
C1—C6—C7124.0 (2)C9—O2—Cu1114.80 (17)
N1—C7—C6121.7 (2)C11—O4—H4A109.5
N1—C7—C10121.3 (2)Cu1—O1W—H1WA109.5
C6—C7—C10116.9 (2)Cu1—O1W—H1WB127.5
N1—C8—C9110.2 (2)H1WA—O1W—H1WB109.1
N1—C8—C11111.0 (2)H2WA—O2W—H2WB121.1
D—H···AD—HH···AD···AD—H···A
O4—H4A···O3i0.821.842.651 (3)171
O1W—H1WA···O2Wii0.821.912.694 (3)161
O1W—H1WB···O2iii0.851.922.740 (3)162
O2W—H2WA···O40.852.042.837 (3)156
O2W—H2WB···O1ii0.852.022.817 (3)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O4—H4A⋯O3i 0.821.842.651 (3)171
O1W—H1WA⋯O2W ii 0.821.912.694 (3)161
O1W—H1WB⋯O2iii 0.851.922.740 (3)162
O2W—H2WA⋯O40.852.042.837 (3)156
O2W—H2WB⋯O1ii 0.852.022.817 (3)157

Symmetry codes: (i) ; (ii) ; (iii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  2 in total

1.  catena-Poly[[[(3,5-dimethyl-1H-pyrazole)-copper(II)]-μ-{N-[1-(2-oxidophen-yl)ethyl-idene]-l-valinato}] methanol monosolvate].

Authors:  Gan-Qing Zhao; Xu-Dong Li; Yong-Jun Han; Ling-Wei Xue; Qin-Long Peng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15

2.  Mononuclear and Tetranuclear Copper(II) Complexes Bearing Amino Acid Schiff Base Ligands: Structural Characterization and Catalytic Applications.

Authors:  Karla-Alejandra López-Gastélum; Enrique F Velázquez-Contreras; Juventino J García; Marcos Flores-Alamo; Gerardo Aguirre; Daniel Chávez-Velasco; Jayanthi Narayanan; Fernando Rocha-Alonzo
Journal:  Molecules       Date:  2021-12-01       Impact factor: 4.411

  2 in total

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