Literature DB >> 21578553

Tetra-kis(2-amino-pyrazine-κN)dichlorido-cobalt(II).

Wei Kang, Li-Hua Huo, Shan Gao, Seik Weng Ng.   

Abstract

The Co(II) atom in the title complex, [CoCl(2)(C(4)H(5)N(3))(4)], exists in an all-trans Cl(2)N(4)Co octa-hedral geometry. The Co(II) atom lies on a special position of 2 site symmetry. Adjacent mol-ecules are linked by N-H⋯N and N-H⋯Cl hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2009        PMID: 21578553      PMCID: PMC2972178          DOI: 10.1107/S1600536809045309

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the triclinic modification, see: Csöregh et al. (2000 ▶).

Experimental

Crystal data

[CoCl2(C4H5N3)4] M = 510.27 Orthorhombic, a = 7.6347 (2) Å b = 15.7341 (4) Å c = 18.6074 (4) Å V = 2235.22 (9) Å3 Z = 4 Mo Kα radiation μ = 1.04 mm−1 T = 293 K 0.30 × 0.20 × 0.15 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.746, T max = 0.860 20053 measured reflections 2553 independent reflections 2234 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.074 S = 1.06 2553 reflections 157 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.25 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalClear (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809045309/xu2656sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809045309/xu2656Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CoCl2(C4H5N3)4]F(000) = 1044
Mr = 510.27Dx = 1.516 Mg m3
Orthorhombic, PccnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ab 2acCell parameters from 15790 reflections
a = 7.6347 (2) Åθ = 2.3–27.5°
b = 15.7341 (4) ŵ = 1.04 mm1
c = 18.6074 (4) ÅT = 293 K
V = 2235.22 (9) Å3Block, red
Z = 40.30 × 0.20 × 0.15 mm
Rigaku RAXIS-RAPID IP diffractometer2553 independent reflections
Radiation source: fine-focus sealed tube2234 reflections with I > 2σ(I)
graphiteRint = 0.024
ω scansθmax = 27.5°, θmin = 3.2°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −9→9
Tmin = 0.746, Tmax = 0.860k = −20→20
20053 measured reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.074H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0439P)2 + 0.4514P] where P = (Fo2 + 2Fc2)/3
2553 reflections(Δ/σ)max = 0.001
157 parametersΔρmax = 0.28 e Å3
4 restraintsΔρmin = −0.25 e Å3
xyzUiso*/Ueq
Co10.75000.25000.103443 (12)0.02794 (9)
Cl10.98632 (5)0.14744 (2)0.103952 (17)0.03970 (11)
N10.61989 (16)0.17473 (8)0.01880 (6)0.0348 (3)
N20.46194 (19)0.08976 (11)−0.09614 (7)0.0553 (4)
N30.1968 (2)0.09877 (14)−0.03954 (8)0.0686 (5)
N40.88907 (16)0.31841 (7)0.18890 (6)0.0339 (3)
N51.03169 (17)0.40550 (8)0.30631 (6)0.0387 (3)
N60.9535 (2)0.53209 (8)0.25231 (7)0.0527 (4)
C10.45050 (19)0.15892 (9)0.01846 (7)0.0357 (3)
H1A0.38230.17710.05690.043*
C20.3693 (2)0.11475 (10)−0.03920 (7)0.0413 (3)
C30.6338 (2)0.10573 (14)−0.09351 (9)0.0625 (6)
H3A0.70270.0878−0.13180.075*
C40.7141 (2)0.14683 (13)−0.03790 (9)0.0509 (4)
H4A0.83450.1557−0.03910.061*
C50.88843 (19)0.40188 (8)0.19189 (6)0.0319 (3)
H50.83950.43240.15410.038*
C60.96002 (18)0.44673 (8)0.25094 (7)0.0325 (3)
C71.0327 (2)0.32043 (10)0.30155 (8)0.0453 (4)
H71.08230.28960.33900.054*
C80.9645 (2)0.27664 (10)0.24459 (8)0.0452 (4)
H80.97000.21760.24400.054*
H10.136 (3)0.1094 (14)−0.0022 (8)0.078 (7)*
H20.155 (3)0.0704 (11)−0.0753 (8)0.063 (6)*
H30.978 (3)0.5580 (12)0.2913 (7)0.060 (6)*
H40.909 (2)0.5583 (11)0.2164 (8)0.061 (6)*
U11U22U33U12U13U23
Co10.03367 (16)0.02901 (14)0.02114 (14)−0.00229 (9)0.0000.000
Cl10.0462 (2)0.0432 (2)0.02968 (18)0.01013 (15)0.00662 (13)0.00476 (12)
N10.0337 (6)0.0435 (6)0.0271 (5)−0.0030 (5)0.0015 (5)−0.0079 (5)
N20.0407 (8)0.0851 (11)0.0401 (7)−0.0055 (7)0.0052 (6)−0.0322 (7)
N30.0366 (8)0.1287 (16)0.0407 (8)−0.0134 (9)0.0027 (6)−0.0368 (9)
N40.0428 (7)0.0326 (5)0.0262 (5)−0.0011 (5)−0.0058 (5)0.0003 (4)
N50.0447 (7)0.0433 (6)0.0281 (5)−0.0005 (5)−0.0095 (5)−0.0004 (5)
N60.0912 (12)0.0339 (6)0.0331 (6)−0.0092 (7)−0.0211 (7)0.0002 (5)
C10.0359 (7)0.0464 (7)0.0248 (6)0.0013 (6)0.0028 (5)−0.0084 (6)
C20.0352 (8)0.0588 (9)0.0300 (6)−0.0012 (7)0.0005 (6)−0.0124 (6)
C30.0416 (9)0.1031 (16)0.0429 (9)−0.0042 (10)0.0106 (7)−0.0368 (9)
C40.0340 (8)0.0789 (12)0.0398 (8)−0.0060 (7)0.0075 (6)−0.0206 (8)
C50.0399 (7)0.0323 (6)0.0236 (6)−0.0039 (5)−0.0055 (5)0.0036 (5)
C60.0376 (7)0.0349 (6)0.0251 (6)−0.0057 (5)−0.0034 (5)0.0008 (5)
C70.0582 (10)0.0450 (8)0.0326 (7)0.0103 (7)−0.0151 (7)0.0028 (6)
C80.0650 (11)0.0335 (7)0.0371 (7)0.0090 (7)−0.0136 (7)0.0015 (6)
Co1—N1i2.2068 (11)N5—C61.3348 (18)
Co1—N12.2068 (11)N5—C71.341 (2)
Co1—N42.1941 (11)N6—C61.3441 (18)
Co1—N4i2.1941 (11)N6—H30.852 (9)
Co1—Cl1i2.4206 (4)N6—H40.856 (9)
Co1—Cl12.4206 (4)C1—C21.4207 (19)
N1—C11.3170 (19)C1—H1A0.9300
N1—C41.3501 (19)C3—C41.366 (2)
N2—C21.3332 (19)C3—H3A0.9300
N2—C31.337 (2)C4—H4A0.9300
N3—C21.341 (2)C5—C61.4157 (18)
N3—H10.853 (9)C5—H50.9300
N3—H20.864 (9)C7—C81.367 (2)
N4—C51.3145 (17)C7—H70.9300
N4—C81.3556 (18)C8—H80.9300
N4—Co1—N4i87.12 (6)C6—N6—H4118.8 (14)
N4—Co1—N1i92.07 (4)H3—N6—H4121 (2)
N4i—Co1—N1i176.67 (4)N1—C1—C2121.63 (13)
N4—Co1—N1176.67 (4)N1—C1—H1A119.2
N4i—Co1—N192.07 (4)C2—C1—H1A119.2
N1i—Co1—N188.93 (6)N2—C2—N3117.51 (14)
N4—Co1—Cl1i91.77 (3)N2—C2—C1120.88 (15)
N4i—Co1—Cl1i87.91 (3)N3—C2—C1121.59 (13)
N1i—Co1—Cl1i88.89 (3)N2—C3—C4123.88 (15)
N1—Co1—Cl1i91.43 (3)N2—C3—H3A118.1
N4—Co1—Cl187.91 (3)C4—C3—H3A118.1
N4i—Co1—Cl191.77 (3)N1—C4—C3120.47 (15)
N1i—Co1—Cl191.43 (3)N1—C4—H4A119.8
N1—Co1—Cl188.89 (3)C3—C4—H4A119.8
Cl1i—Co1—Cl1179.552 (18)N4—C5—C6121.97 (12)
C1—N1—C4117.25 (12)N4—C5—H5119.0
C1—N1—Co1123.15 (9)C6—C5—H5119.0
C4—N1—Co1119.50 (10)N5—C6—N6119.10 (12)
C2—N2—C3115.85 (13)N5—C6—C5121.00 (12)
C2—N3—H1119.6 (16)N6—C6—C5119.89 (12)
C2—N3—H2117.9 (14)N5—C7—C8123.50 (13)
H1—N3—H2122 (2)N5—C7—H7118.2
C5—N4—C8116.97 (12)C8—C7—H7118.2
C5—N4—Co1121.27 (9)N4—C8—C7120.67 (14)
C8—N4—Co1121.45 (10)N4—C8—H8119.7
C6—N5—C7115.87 (12)C7—C8—H8119.7
C6—N6—H3119.0 (14)
N4i—Co1—N1—C145.73 (12)C3—N2—C2—N3−179.1 (2)
N1i—Co1—N1—C1−131.09 (13)C3—N2—C2—C12.7 (3)
Cl1i—Co1—N1—C1−42.23 (11)N1—C1—C2—N2−1.9 (2)
Cl1—Co1—N1—C1137.45 (11)N1—C1—C2—N3−179.93 (17)
N4i—Co1—N1—C4−138.03 (13)C2—N2—C3—C4−1.6 (3)
N1i—Co1—N1—C445.15 (12)C1—N1—C4—C31.4 (3)
Cl1i—Co1—N1—C4134.01 (13)Co1—N1—C4—C3−175.03 (16)
Cl1—Co1—N1—C4−46.30 (13)N2—C3—C4—N1−0.5 (4)
N4i—Co1—N4—C5−124.52 (13)C8—N4—C5—C6−1.1 (2)
N1i—Co1—N4—C552.25 (11)Co1—N4—C5—C6172.58 (10)
Cl1i—Co1—N4—C5−36.70 (11)C7—N5—C6—N6179.54 (15)
Cl1—Co1—N4—C5143.61 (11)C7—N5—C6—C50.7 (2)
N4i—Co1—N4—C848.91 (11)N4—C5—C6—N50.1 (2)
N1i—Co1—N4—C8−134.32 (13)N4—C5—C6—N6−178.74 (15)
Cl1i—Co1—N4—C8136.73 (12)C6—N5—C7—C8−0.5 (3)
Cl1—Co1—N4—C8−42.96 (12)C5—N4—C8—C71.4 (2)
C4—N1—C1—C2−0.3 (2)Co1—N4—C8—C7−172.29 (13)
Co1—N1—C1—C2176.01 (11)N5—C7—C8—N4−0.6 (3)
D—H···AD—HH···AD···AD—H···A
N3—H1···Cl1ii0.85 (1)2.36 (1)3.209 (2)175 (2)
N3—H2···N5iii0.86 (1)2.43 (2)3.134 (2)140 (2)
N6—H3···Cl1iv0.85 (1)2.42 (1)3.265 (1)171 (2)
N6—H4···N2v0.86 (1)2.33 (2)3.045 (2)142 (2)
Table 1

Selected bond lengths (Å)

Co1—N12.2068 (11)
Co1—N42.1941 (11)
Co1—Cl12.4206 (4)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H1⋯Cl1i 0.85 (1)2.36 (1)3.209 (2)175 (2)
N3—H2⋯N5ii 0.86 (1)2.43 (2)3.134 (2)140 (2)
N6—H3⋯Cl1iii 0.85 (1)2.42 (1)3.265 (1)171 (2)
N6—H4⋯N2iv 0.86 (1)2.33 (2)3.045 (2)142 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  Hexaaqua-cobalt(II) tetra-aqua-bis(2-amino-pyrazine-κN)cobalt(II) disulfate dihydrate.

Authors:  Wei Kang; Li-Hua Huo; Shan Gao; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-04

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09
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